Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001154.1 Kokia drynarioides strain JFW-HI SEQ_112466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6156
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30


Found at i:81 original size:3 final size:3

Alignment explanation


    Indices: 73--100  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

         63 TGGAAAAAAT

                                                 
         73 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A

        101 AACTTGTGGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
ATA

Found at i:5405 original size:87 final size:87

Alignment explanation


    Indices: 5257--5434  Score: 295
    Period size: 87  Copynumber: 2.0  Consensus size: 87

       5247 GTATCTACTT

                       *                       * *                          *
       5257 TCAAGAAATTAGGAATAGGTTCGATGAAGCCCACTGCGGTGACATTGCAACTGACGAATAGATCT
          1 TCAAGAAATTAAGAATAGGTTCGATGAAGCCCACTACAGTGACATTGCAACTGACGAATAGATCC

                                  
       5322 TTAGCACAACTTGAAGTACAAA
         66 TTAGCACAACTTGAAGTACAAA

                                                                             
       5344 TCAAGAAATTAAGAATAGGTTCGATGAAGCCCACTACAGTGACATTGCAACTGAC-AGATAGATC
          1 TCAAGAAATTAAGAATAGGTTCGATGAAGCCCACTACAGTGACATTGCAACTGACGA-ATAGATC

                 *                 
       5408 CTTAGTACAACTTGAAGTACAAA
         65 CTTAGCACAACTTGAAGTACAAA

                
       5431 TCAA
          1 TCAA

       5435 AGATGTTCTT


Statistics
Matches: 85,  Mismatches: 5, Indels: 2
        0.92            0.05        0.02

Matches are distributed among these distances:
  86    1  0.01
  87   84  0.99

ACGTcount: A:0.39, C:0.19, G:0.20, T:0.23


Consensus pattern (87 bp):   
TCAAGAAATTAAGAATAGGTTCGATGAAGCCCACTACAGTGACATTGCAACTGACGAATAGATCC
TTAGCACAACTTGAAGTACAAA
Done.