genome.fa.s11540.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011540.1 Kokia drynarioides strain JFW-HI SEQ_126526, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98017

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3041--3127	37	2.4	37	96	0	156	44	18	22	13	1.85
11441--11793	30	11.9	29	78	8	311	37	1	24	36	1.66
11419--11793	59	6.3	60	77	8	322	38	1	24	36	1.66
11419--11793	89	4.2	91	77	10	353	38	1	24	36	1.66
12823--12871	4	11.8	4	87	8	62	67	0	0	32	0.91
12831--12874	22	2.0	22	90	0	70	63	0	0	36	0.95
12827--12880	26	2.1	26	92	0	90	61	0	0	38	0.96
12823--12880	30	1.9	30	96	0	107	62	0	0	37	0.96
13740--14865	209	5.4	209	87	0	1529	23	21	17	37	1.94
19410--19438	6	4.8	6	100	0	58	31	0	34	34	1.58
23155--23185	15	2.0	16	93	6	55	32	19	29	19	1.96
24205--24245	19	2.2	19	86	8	57	48	9	14	26	1.75
24285--24363	35	2.2	37	84	6	99	70	1	7	20	1.18
24410--24515	30	3.7	27	71	14	79	36	2	24	35	1.70
24534--24677	29	4.9	29	80	11	159	38	2	22	36	1.69
25339--25364	11	2.4	11	100	0	52	0	30	0	69	0.89
26443--26488	17	2.7	17	89	0	65	52	2	4	41	1.33
26442--26502	17	3.6	17	78	10	63	50	3	4	40	1.40
26904--27359	39	11.7	39	68	9	203	26	19	29	24	1.98
26854--27392	156	3.5	155	83	2	643	26	19	30	24	1.98
26854--27392	78	6.9	78	84	1	578	26	19	30	24	1.98
26865--27381	39	13.3	39	68	11	182	26	19	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39176--39219	18	2.3	20	85	11	58	65	4	4	25	1.30
39289--39437	59	2.5	57	81	9	176	38	3	24	33	1.72
39284--39437	30	5.2	29	80	9	161	37	3	26	33	1.73
39442--39524	30	2.8	30	85	5	107	39	0	21	38	1.54
39925--40012	36	2.4	36	96	0	158	29	28	22	19	1.98
44730--44821	23	4.0	23	81	0	94	14	18	20	46	1.83
47281--47627	30	11.6	30	79	4	272	38	3	23	34	1.72
47295--47607	89	3.5	87	78	7	333	38	3	23	35	1.71
47281--47597	119	2.7	119	81	4	370	38	3	23	34	1.72
48600--48638	17	2.4	16	91	8	62	30	2	0	66	1.05
48609--48651	21	2.0	21	86	0	59	34	4	2	58	1.32
49734--49786	15	3.6	14	78	14	54	49	15	16	18	1.80
49959--50010	25	2.1	25	82	13	63	28	5	11	53	1.60
56443--56716	29	9.5	29	79	8	158	32	7	27	32	1.85
56547--56877	30	11.2	29	77	9	262	35	4	25	34	1.77
57952--57985	7	4.7	7	88	3	50	29	2	0	67	1.05
58654--58692	12	3.2	12	77	0	51	56	7	0	35	1.28
58641--58692	24	2.2	24	89	0	77	53	5	3	36	1.43
59469--59502	18	1.9	17	88	5	50	76	5	0	17	0.98
63381--63438	31	1.9	31	86	13	86	60	0	0	39	0.97
63819--63855	18	2.0	19	89	5	58	35	0	5	59	1.20
66043--66182	56	2.4	57	79	9	133	51	0	6	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66287--66311	13	1.9	13	100	0	50	64	4	0	32	1.12
77621--77665	21	2.0	21	83	8	54	31	4	0	64	1.13
78678--78710	6	5.5	6	89	10	50	54	0	0	45	0.99
86568--86669	23	4.4	23	87	0	150	43	22	18	15	1.88
86568--86689	23	5.3	23	86	2	111	41	21	20	16	1.90
86565--86678	46	2.5	46	88	0	156	42	21	19	15	1.88
93629--93677	23	2.1	23	92	0	80	46	4	0	48	1.20
93612--93711	54	1.9	52	80	10	114	43	3	2	52	1.28

Tables:   1

The End!