Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011541.1 Kokia drynarioides strain JFW-HI SEQ_126527, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16202
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:2524 original size:16 final size:15

Alignment explanation


    Indices: 2489--2521  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       2479 AAACCAAGAG

                           
       2489 TTTT-ACAACATTCA
          1 TTTTCACAACATTCA

                     *     
       2503 TTTTCACAATATTCA
          1 TTTTCACAACATTCA

                
       2518 TTTT
          1 TTTT

       2522 TCATTAAAAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  14    4  0.24
  15   13  0.76

ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52


Consensus pattern (15 bp):   
TTTTCACAACATTCA

Found at i:12208 original size:14 final size:14

Alignment explanation


    Indices: 12189--12221  Score: 66
    Period size: 14  Copynumber: 2.4  Consensus size: 14

      12179 ACAGAAATAG

                          
      12189 TTGCATGTACGAAT
          1 TTGCATGTACGAAT

                          
      12203 TTGCATGTACGAAT
          1 TTGCATGTACGAAT

                 
      12217 TTGCA
          1 TTGCA

      12222 AAAATGGTAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   19  1.00

ACGTcount: A:0.27, C:0.15, G:0.21, T:0.36


Consensus pattern (14 bp):   
TTGCATGTACGAAT
Done.