Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011542.1 Kokia drynarioides strain JFW-HI SEQ_126528, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4230
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:744 original size:30 final size:30

Alignment explanation


    Indices: 668--748  Score: 99
    Period size: 30  Copynumber: 2.7  Consensus size: 30

        658 AAGATCCCTG

                  *       * **            
        668 AACTTTCCAAAAATCATGTTTTAACCCTTA
          1 AACTTTTCAAAAATTACATTTTAACCCTTA

                                          
        698 AACTTTTCAAAAATTACATTTTAACCCTTA
          1 AACTTTTCAAAAATTACATTTTAACCCTTA

              *     *  *         
        728 AATTTTTCCAAGATTACATTT
          1 AACTTTTCAAAAATTACATTT

        749 GACCCCAAAT


Statistics
Matches: 44,  Mismatches: 7, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  30   44  1.00

ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41


Consensus pattern (30 bp):   
AACTTTTCAAAAATTACATTTTAACCCTTA

Found at i:915 original size:24 final size:24

Alignment explanation


    Indices: 888--938  Score: 59
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        878 TTTTCTTCGT

                  *                  
        888 ATTTCGTATTTTATTT-TATGCTTA
          1 ATTTCGCA-TTTATTTATATGCTTA

                *            *      
        912 ATTTTGCATTTATTTATTTGCTTA
          1 ATTTCGCATTTATTTATATGCTTA

               
        936 ATT
          1 ATT

        939 ATTCTGTCTT


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  23    7  0.30
  24   16  0.70

ACGTcount: A:0.22, C:0.08, G:0.08, T:0.63


Consensus pattern (24 bp):   
ATTTCGCATTTATTTATATGCTTA
Done.