genome.fa.s11543.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011543.1 Kokia drynarioides strain JFW-HI SEQ_126529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47527

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6596--6677	35	2.3	35	89	0	128	29	23	10	36	1.89
6710--6765	19	2.9	19	83	0	76	25	30	19	25	1.98
6791--6874	19	4.5	19	85	7	109	28	26	22	22	1.99
14999--15035	17	2.2	17	90	0	56	59	8	10	21	1.56
14999--15052	18	3.1	18	83	2	56	59	9	11	20	1.59
19406--19555	69	2.1	68	83	9	187	44	20	22	13	1.86
19406--19579	23	7.5	23	77	10	140	43	21	22	12	1.86
21221--21408	47	3.9	47	90	5	288	11	26	22	38	1.89
21221--21419	97	2.0	98	91	2	321	12	28	22	37	1.89
21221--21419	25	8.2	25	87	8	277	12	28	22	37	1.89
23117--23153	17	2.2	17	90	0	56	59	8	10	21	1.56
23117--23170	18	3.1	18	83	2	56	59	9	11	20	1.59
27524--27673	69	2.1	68	83	9	187	44	20	22	13	1.86
27524--27697	23	7.5	23	77	10	140	43	21	22	12	1.86
29339--29526	47	3.9	47	90	5	288	11	26	22	38	1.89
29339--29537	97	2.0	98	91	2	321	12	28	22	37	1.89
29339--29537	25	8.2	25	87	8	277	12	28	22	37	1.89
33494--33543	26	2.0	26	84	7	68	48	0	26	26	1.52
35616--35640	7	3.6	7	100	0	50	0	16	60	24	1.36
37592--37629	19	2.0	19	90	10	60	73	10	5	10	1.23
37592--37630	20	2.0	19	90	5	60	74	10	5	10	1.21
37680--37725	23	2.0	23	86	0	65	28	2	0	69	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39450--39480	16	1.9	16	93	0	53	32	0	0	67	0.91
40968--41009	18	2.3	19	84	12	61	64	4	16	14	1.45
41514--41559	23	2.0	23	86	0	65	54	0	0	45	0.99
41553--41600	20	2.4	21	79	10	55	54	0	2	43	1.12
41994--42045	3	17.3	3	100	0	104	32	0	0	67	0.91
42786--42973	97	1.9	96	82	9	231	37	13	18	31	1.89
43269--43497	29	7.8	30	76	14	176	31	4	29	34	1.77
43300--43497	58	3.4	58	82	6	240	31	4	30	33	1.76
43239--43496	87	2.9	87	79	11	249	32	4	29	32	1.78
45274--45355	6	14.5	6	69	16	59	51	3	0	45	1.19
45276--45355	17	4.8	17	87	1	108	52	3	0	43	1.19
45966--46079	47	2.4	47	85	0	147	22	26	16	34	1.95
46654--46714	27	2.2	27	88	2	86	60	4	14	19	1.52

Tables:   1

The End!