Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011544.1 Kokia drynarioides strain JFW-HI SEQ_126530, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2869
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.28

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:400 original size:15 final size:15

Alignment explanation


    Indices: 380--408  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        370 ACAAATATAG

                           
        380 AATAAAATGCAAAGC
          1 AATAAAATGCAAAGC

                          
        395 AATAAAATGCAAAG
          1 AATAAAATGCAAAG

        409 GATCACAACT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.62, C:0.10, G:0.14, T:0.14


Consensus pattern (15 bp):   
AATAAAATGCAAAGC

Found at i:1284 original size:14 final size:15

Alignment explanation


    Indices: 1260--1288  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       1250 AACATATATA

                           
       1260 CAATAAAATGCAAAG
          1 CAATAAAATGCAAAG

                           
       1275 CAAT-AAATGCAAAG
          1 CAATAAAATGCAAAG

       1289 GATCACAACT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14   10  0.71
  15    4  0.29

ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14


Consensus pattern (15 bp):   
CAATAAAATGCAAAG

Found at i:2518 original size:14 final size:15

Alignment explanation


    Indices: 2494--2522  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       2484 AACATATATA

                           
       2494 CAATAAAATGCAAAG
          1 CAATAAAATGCAAAG

                           
       2509 CAAT-AAATGCAAAG
          1 CAATAAAATGCAAAG

       2523 GATCACAACT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14   10  0.71
  15    4  0.29

ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14


Consensus pattern (15 bp):   
CAATAAAATGCAAAG
Done.