genome.fa.s11557.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011557.1 Kokia drynarioides strain JFW-HI SEQ_126546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84817

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2497--2558	31	2.0	31	100	0	124	29	22	19	29	1.98
2777--2856	37	2.2	36	84	6	106	42	18	13	25	1.87
3752--3796	6	7.5	6	89	0	63	22	31	0	46	1.52
7698--7743	22	2.1	22	84	8	58	4	26	0	69	1.07
15328--15369	16	2.5	17	76	7	50	47	26	11	14	1.78
15827--15860	18	1.9	18	88	5	52	29	0	5	64	1.17
17023--17052	14	2.1	14	93	0	51	70	3	6	20	1.25
17849--17884	16	2.2	17	90	5	56	19	0	0	80	0.71
20006--20197	53	3.6	53	85	1	269	35	21	15	27	1.93
20006--20197	105	1.8	105	89	0	303	35	21	15	27	1.93
26659--26856	53	3.7	53	84	1	236	34	20	15	29	1.93
26659--26856	106	1.9	106	87	2	290	34	20	15	29	1.93
28758--28822	23	2.8	23	79	6	69	47	40	4	7	1.53
34561--34597	12	3.0	12	92	4	56	83	0	16	0	0.64
34973--35053	40	2.0	40	97	0	153	35	14	27	22	1.93
35545--35600	7	8.3	7	86	5	53	78	0	21	0	0.75
35551--35598	4	12.8	4	77	20	50	77	0	22	0	0.78
35545--35598	16	3.2	16	81	7	63	77	0	22	0	0.76
36603--37323	99	7.3	98	74	8	380	36	17	28	17	1.92
36603--37323	49	14.6	49	69	11	205	36	17	28	17	1.92
36603--37323	148	4.9	146	77	6	521	36	17	28	17	1.92
36616--37188	247	2.3	246	81	2	648	36	17	28	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37684--37835	39	3.9	39	77	6	130	29	30	16	23	1.96
37689--38525	40	21.4	39	78	6	648	32	26	15	25	1.95
37772--38501	78	9.4	78	79	10	443	33	25	15	25	1.95
39078--39136	24	2.4	23	78	13	64	52	33	5	8	1.54
45117--45166	21	2.5	20	81	12	57	44	0	2	54	1.11
45449--45513	26	2.5	26	77	22	66	60	1	3	35	1.22
46492--46555	10	6.4	10	73	20	53	31	0	3	65	1.08
46595--46639	23	2.0	23	86	8	65	33	4	0	62	1.15
48019--48109	29	3.0	30	79	4	87	46	10	9	32	1.72
48029--48109	29	2.7	30	84	7	101	44	12	9	33	1.75
48531--48574	3	14.7	3	100	0	88	68	0	0	31	0.90
50178--50254	36	2.1	36	90	0	118	35	27	9	28	1.87
50324--50584	23	11.3	23	81	4	294	44	13	5	36	1.66
50324--50584	69	3.8	69	89	1	335	44	13	5	36	1.66
54772--54937	23	7.2	23	88	2	210	46	13	1	38	1.54
54772--54937	69	2.4	69	89	2	244	46	13	1	38	1.54
64985--65010	12	2.2	12	100	0	52	0	7	0	92	0.39
66387--66432	22	2.0	23	91	4	76	41	2	0	56	1.11
66400--66464	18	3.8	17	74	10	60	41	1	1	55	1.18
66431--66514	44	1.9	44	92	0	141	42	7	1	48	1.38
66798--66855	17	3.4	16	71	19	55	51	1	3	43	1.28
66904--66946	19	2.2	20	87	4	61	58	2	6	32	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67041--67102	11	5.5	11	75	9	54	33	1	0	64	1.03
67505--67556	16	3.2	16	76	10	52	42	1	23	32	1.65
68929--69001	23	3.2	23	88	3	103	27	13	26	32	1.94
71768--72181	30	14.0	29	80	6	359	33	2	28	34	1.72
71726--72185	59	7.8	59	81	5	439	32	3	29	34	1.74
71768--72186	89	4.7	87	78	8	407	33	2	29	34	1.72
72949--72983	11	3.1	11	91	4	52	0	14	0	85	0.59
74022--74116	17	5.5	17	75	1	82	54	7	2	35	1.40
74028--74093	34	1.9	34	90	0	105	54	9	1	34	1.41
74438--75139	205	3.5	187	80	9	681	22	23	19	35	1.96
74766--75200	205	2.1	205	92	0	726	21	23	21	33	1.97
75688--75747	27	2.2	27	90	3	93	56	8	16	18	1.64

Tables:   1

The End!