Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011562.1 Kokia drynarioides strain JFW-HI SEQ_126551, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3992
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:3704 original size:3 final size:3

Alignment explanation


    Indices: 3692--3720  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

       3682 CATGGTTGAG

                                                   
       3692 CTT C-T CTT CTT CTT CTT CTT CTT CTT CTT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT

       3721 TATTTTAAAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2    2  0.08
   3   23  0.92

ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66


Consensus pattern (3 bp):   
CTT

Done.