Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011566.1 Kokia drynarioides strain JFW-HI SEQ_126555, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6573
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:277 original size:54 final size:53

Alignment explanation


    Indices: 195--301  Score: 196
    Period size: 54  Copynumber: 2.0  Consensus size: 53

        185 ATCGGTCTCT

                                                                 
        195 CGCCCGGATTTAGCCTTGGAAGGAATTTACCGCCCGATTAGGGCTGCATTCCC
          1 CGCCCGGATTTAGCCTTGGAAGGAATTTACCGCCCGATTAGGGCTGCATTCCC

                   *                                              
        248 NCGCCCGTATTTAGCCTTGGAAGGAATTTACCGCCCGATTAGGGCTGCATTCCC
          1 -CGCCCGGATTTAGCCTTGGAAGGAATTTACCGCCCGATTAGGGCTGCATTCCC

        302 AAACAACCCG


Statistics
Matches: 52,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  54   52  1.00

ACGTcount: A:0.19, C:0.30, G:0.25, T:0.25


Consensus pattern (53 bp):   
CGCCCGGATTTAGCCTTGGAAGGAATTTACCGCCCGATTAGGGCTGCATTCCC
Done.