Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011567.1 Kokia drynarioides strain JFW-HI SEQ_126556, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4273
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29


Found at i:3514 original size:14 final size:15

Alignment explanation


    Indices: 3495--3525  Score: 55
    Period size: 14  Copynumber: 2.1  Consensus size: 15

       3485 CAAGAAATGG

                           
       3495 GAAGAAAAAT-TGTT
          1 GAAGAAAAATGTGTT

                           
       3509 GAAGAAAAATGTGTT
          1 GAAGAAAAATGTGTT

              
       3524 GA
          1 GA

       3526 TGAACCTGGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14   10  0.62
  15    6  0.38

ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26


Consensus pattern (15 bp):   
GAAGAAAAATGTGTT

Done.