genome.fa.s11572.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011572.1 Kokia drynarioides strain JFW-HI SEQ_126561, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159573

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3641--3680	19	2.1	19	86	9	55	35	0	0	65	0.93
8052--8077	7	3.7	7	100	0	52	0	42	0	57	0.98
8052--8101	17	3.0	17	77	13	59	6	38	0	56	1.24
11862--11887	7	3.7	7	100	0	52	0	42	0	57	0.98
20849--20879	16	1.9	16	93	0	53	58	3	6	32	1.40
26146--26214	34	2.0	34	100	0	138	23	11	18	46	1.82
28568--28762	104	1.9	104	85	6	270	29	15	22	32	1.95
28572--28771	52	3.8	52	80	6	219	29	16	23	32	1.95
28558--28797	104	2.3	104	80	8	249	28	16	24	31	1.96
35798--35997	52	3.8	52	78	3	179	29	14	21	35	1.93
35800--35997	104	1.9	104	81	4	238	29	14	20	35	1.93
37721--37894	60	2.9	62	85	6	207	33	12	23	30	1.91
42943--43078	51	2.7	51	89	2	202	33	11	24	30	1.91
43068--43242	60	2.9	60	86	1	224	34	13	22	29	1.93
48429--48672	52	4.7	52	81	2	276	29	15	22	32	1.95
56218--56265	24	2.0	24	84	11	64	16	20	4	58	1.55
57212--57262	22	2.3	22	86	3	66	13	7	1	76	1.09
57226--57326	30	3.4	28	74	10	78	14	6	2	75	1.13
57251--57326	30	2.6	30	78	2	82	15	7	2	73	1.17
57862--58011	80	1.9	80	92	0	255	28	14	22	34	1.93
58461--58590	48	2.8	48	88	2	183	50	13	9	26	1.71
61003--61395	192	2.0	195	83	7	500	29	18	25	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85220--85244	12	2.1	12	100	0	50	44	8	32	16	1.76
85534--85639	56	1.9	56	98	0	203	27	9	15	48	1.75
85777--85854	38	2.1	38	100	0	156	25	5	29	39	1.77
89713--89769	24	2.6	21	83	8	60	36	21	10	31	1.87
90321--90490	79	2.2	79	86	3	236	37	22	13	26	1.91
90449--90672	54	4.2	54	89	1	353	35	20	13	29	1.92
90452--90672	107	2.1	107	92	0	361	36	20	13	29	1.91
92922--92954	17	1.9	17	88	11	50	27	0	6	66	1.15
93148--93303	50	3.1	50	75	11	156	34	14	12	37	1.85
108462--108500	17	2.2	18	86	13	55	74	10	0	15	1.07
110853--110895	20	2.2	19	83	4	50	32	2	18	46	1.62
122061--122085	13	1.9	13	100	0	50	80	4	0	16	0.87
123483--123534	17	2.9	17	78	18	52	21	7	3	67	1.32
127465--127538	37	2.0	37	97	0	139	29	20	24	25	1.99
135659--135814	50	3.1	50	77	8	163	35	15	12	36	1.85
141361--141385	13	1.9	13	100	0	50	84	0	0	16	0.63
143116--143189	26	2.8	26	78	8	78	31	25	17	25	1.97
143116--143207	26	3.6	27	75	11	68	29	25	18	27	1.98
144091--144115	3	8.3	3	100	0	50	68	0	32	0	0.90
150364--150556	50	3.8	49	79	7	194	36	13	14	35	1.85
150364--150556	101	1.9	101	83	8	250	36	13	14	35	1.85
152236--152289	17	3.4	17	73	21	62	11	22	0	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152329--152369	15	2.4	18	84	15	61	9	17	2	70	1.25
154261--154453	51	3.8	49	83	6	228	37	12	13	35	1.83
154261--154453	102	1.9	100	87	8	284	37	12	13	35	1.83
154605--154640	17	2.1	17	90	10	56	66	2	0	30	1.06
157505--158735	216	5.7	216	80	3	1344	27	18	12	41	1.86
157505--158633	432	2.6	430	86	2	1530	27	17	12	41	1.86

Tables:   1

The End!