Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011577.1 Kokia drynarioides strain JFW-HI SEQ_126566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6488
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.36

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:3888 original size:13 final size:12

Alignment explanation


    Indices: 3872--3910  Score: 53
    Period size: 13  Copynumber: 3.2  Consensus size: 12

       3862 TTATTCTTAA

                         
       3872 AAATATTTAGATT
          1 AAATATTTA-ATT

                         
       3885 AAATATTTAATAT
          1 AAATATTTAAT-T

                        
       3898 AAA-ATTTAATT
          1 AAATATTTAATT

              
       3909 AA
          1 AA

       3911 TAATTTTTAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  11    3  0.12
  12    9  0.36
  13   13  0.52

ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44


Consensus pattern (12 bp):   
AAATATTTAATT

Found at i:5691 original size:23 final size:23

Alignment explanation


    Indices: 5661--5727  Score: 77
    Period size: 20  Copynumber: 3.0  Consensus size: 23

       5651 GTTGTTTTGG

                                   
       5661 TGCTATTTTGGTTATTATTATTT
          1 TGCTATTTTGGTTATTATTATTT

                         *         
       5684 TGCTATTTTGG-TGTT-TT-TTT
          1 TGCTATTTTGGTTATTATTATTT

             *                      
       5704 TACTATTTTGGTGTAGTTATTATT
          1 TGCTATTTTGGT-TA-TTATTATT

       5728 ATTATTTTTG


Statistics
Matches: 36,  Mismatches: 3, Indels: 8
        0.77            0.06        0.17

Matches are distributed among these distances:
  20   13  0.36
  21    2  0.06
  22    4  0.11
  23   13  0.36
  24    2  0.06
  25    2  0.06

ACGTcount: A:0.15, C:0.04, G:0.16, T:0.64


Consensus pattern (23 bp):   
TGCTATTTTGGTTATTATTATTT

Done.