Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011578.1 Kokia drynarioides strain JFW-HI SEQ_126567, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 337635
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Warning! 124 characters in sequence are not A, C, G, or T
Found at i:307 original size:29 final size:29
Alignment explanation
Indices: 272--734 Score: 128
Period size: 29 Copynumber: 15.8 Consensus size: 29
262 ACGGGGGGGC
* *
272 AAAATGGTAGTTTTGGAAGTTCGGAATCA
1 AAAATGGGATTTTTGGAAGTTCGGAATCA
* *
301 AAAATGGGATTTTTGGAAGTTCAAGAGT--
1 AAAATGGGATTTTTGGAAGTTC-GGAATCA
* **
329 AAAATGGTAATTTTTAAAAGGTTCGG-ATCA
1 AAAATGG-GATTTTTGGAA-GTTCGGAATCA
* **
359 AAAATGGGATTTTTGGAAGTTTTGGGGT--
1 AAAATGGGATTTTTGGAAG-TTCGGAATCA
* * * * *
387 AAAATGGTAATTTTTAGAAGATTTAGG-GTAA
1 AAAATGG-GATTTTTGGAAG--TTCGGAATCA
* **
418 AAAATGGGATTTGTGGAAGTTCGGGGGT--
1 AAAATGGGATTTTTGGAAGTTC-GGAATCA
* * * *
446 -AAATGGTAATTTTTGGAAAGTTTAGG-GTTA
1 AAAATGG-GATTTTTGG-AAG-TTCGGAATCA
* **
476 AAAATGAGATTTTTGGAAGTTCGGGGGT--
1 AAAATGGGATTTTTGGAAGTTC-GGAATCA
** *
504 AAAATGATAATTTTTGGAAAGTTC-GAGGTCA
1 AAAATG-GGATTTTTGG-AAGTTCGGA-ATCA
**
535 AAAATGGGATTTTTGGAAGTTCGAGGGT--
1 AAAATGGGATTTTTGGAAGTTCG-GAATCA
* **
563 AAAATGGTAATTTTTAAAAGGTTCGG--TGCTA
1 AAAATGG-GATTTTTGGAA-GTTCGGAAT-C-A
* **
594 AAAATGGGA-TTTTGGGAGTTCGAGGGT--
1 AAAATGGGATTTTTGGAAGTTCG-GAATCA
* *
621 AAAATGGTAATTTTTGGAAGGTTC-GAGGTCA
1 AAAATGG-GATTTTTGGAA-GTTCGGA-ATCA
**
652 AAAATGGGATTTTTGGAAGTTCTGGGGT--
1 AAAATGGGATTTTTGGAAGTTC-GGAATCA
* *
680 AAAATGGAAATTTTTGGAAGATTC-GAGGTCA
1 AAAATGG-GATTTTTGGAAG-TTCGGA-ATCA
711 AAAATGGGATTTTTGGAAGTTCGG
1 AAAATGGGATTTTTGGAAGTTCGG
735 TGGTAAAATG
Statistics
Matches: 335, Mismatches: 48, Indels: 101
0.69 0.10 0.21
Matches are distributed among these distances:
27 14 0.04
28 58 0.17
29 125 0.37
30 96 0.29
31 42 0.13
ACGTcount: A:0.33, C:0.04, G:0.30, T:0.33
Consensus pattern (29 bp):
AAAATGGGATTTTTGGAAGTTCGGAATCA
Found at i:369 original size:58 final size:58
Alignment explanation
Indices: 266--761 Score: 574
Period size: 59 Copynumber: 8.5 Consensus size: 58
256 GGATGCACGG
* * * *
266 GGGGGCAAAATGGT-AGTTTTGGAA-GTTCGGAATCAAAAATGGGATTTTTGGAAGTTC
1 GGGGGTAAAATGGTAATTTTTGAAAGGTTCGG-GTCAAAAATGGGATTTTTGGAAGTTC
** * * * *
323 AAGAGTAAAATGGTAATTTTTAAAAGGTTCGGATCAAAAATGGGATTTTTGGAAGTTT
1 GGGGGTAAAATGGTAATTTTTGAAAGGTTCGGGTCAAAAATGGGATTTTTGGAAGTTC
* * * * *
381 TGGGGTAAAATGGTAATTTTT-AGAAGATTTAGGGTAAAAAATGGGATTTGTGGAAGTTC
1 GGGGGTAAAATGGTAATTTTTGA-AAG-GTTCGGGTCAAAAATGGGATTTTTGGAAGTTC
* * * *
440 GGGGGT-AAATGGTAATTTTTGGAAAGTTTAGGGTTAAAAATGAGATTTTTGGAAGTTC
1 GGGGGTAAAATGGTAATTTTT-GAAAGGTTCGGGTCAAAAATGGGATTTTTGGAAGTTC
*
498 GGGGGTAAAATGATAATTTTTGGAAA-GTTCGAGGTCAAAAATGGGATTTTTGGAAGTTC
1 GGGGGTAAAATGGTAATTTTT-GAAAGGTTCG-GGTCAAAAATGGGATTTTTGGAAGTTC
* * *
557 GAGGGTAAAATGGTAATTTTTAAAAGGTTC-GGTGCTAAAAATGGGA-TTTTGGGAGTTC
1 GGGGGTAAAATGGTAATTTTTGAAAGGTTCGGGT-C-AAAAATGGGATTTTTGGAAGTTC
* *
615 GAGGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTC
1 GGGGGTAAAATGGTAATTTTTGAAAGGTTCG-GGTCAAAAATGGGATTTTTGGAAGTTC
* * * *
674 TGGGGTAAAATGGAAATTTTTGGAAGATTCGAGGTCAAAAATGGGATTTTTGGAAGTTC
1 GGGGGTAAAATGGTAATTTTTGAAAGGTTCG-GGTCAAAAATGGGATTTTTGGAAGTTC
* *
733 GGTGGTAAAATGGTAATTTTTGGAAGGTT
1 GGGGGTAAAATGGTAATTTTTGAAAGGTT
762 TAGGGACCTT
Statistics
Matches: 384, Mismatches: 41, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
57 14 0.04
58 158 0.41
59 208 0.54
60 4 0.01
ACGTcount: A:0.32, C:0.04, G:0.31, T:0.33
Consensus pattern (58 bp):
GGGGGTAAAATGGTAATTTTTGAAAGGTTCGGGTCAAAAATGGGATTTTTGGAAGTTC
Found at i:448 original size:117 final size:117
Alignment explanation
Indices: 298--758 Score: 594
Period size: 117 Copynumber: 3.9 Consensus size: 117
288 AAGTTCGGAA
* * *
298 TCAAAAATGGGATTTTTGGAAGTTCAAGAGTAAAATGGTAATTTTTAAAAGGTTCGGATCAAAAA
1 TCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTAAAAGGTTCGGGTCAAAAA
* * *
363 TGGGATTTTTGGAAGTTTTGGGGTAAAATGGTAATTTTTAGAAGATTTAG-GG
66 TGGGATTTTTGGAAG-TTCGGGGTAAAATGGTAATTTTTGGAAGAGTTAGAGG
* * * * * * *
415 TAAAAAATGGGATTTGTGGAAGTTCGGGGGT-AAATGGTAATTTTTGGAAAGTTTAGGGTTAAAA
1 TCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTT-AAAAGGTTCGGGTCAAAA
* * *
479 ATGAGATTTTTGGAAGTTCGGGGGTAAAATGATAATTTTTGGAA-AGTTCGAGG
65 ATGGGATTTTTGGAAGTTC-GGGGTAAAATGGTAATTTTTGGAAGAGTTAGAGG
532 TCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTAAAAGGTTC-GGTGCTAAA
1 TCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTAAAAGGTTCGGGT-C-AAA
* *
596 AATGGGA-TTTTGGGAGTTCGAGGGTAAAATGGTAATTTTTGGAAG-GTTCGAGG
64 AATGGGATTTTTGGAAGTTCG-GGGTAAAATGGTAATTTTTGGAAGAGTTAGAGG
* ** *
649 TCAAAAATGGGATTTTTGGAAGTTCTG-GGGTAAAATGGAAATTTTTGGAAGATTCGAGGTCAAA
1 TCAAAAATGGGATTTTTGGAAGTTC-GAGGGTAAAATGGTAATTTTTAAAAGGTTCG-GGTCAAA
713 AATGGGATTTTTGGAAGTTCGGTGGTAAAATGGTAATTTTTGGAAG
64 AATGGGATTTTTGGAAGTTCGG-GGTAAAATGGTAATTTTTGGAAG
759 GTTTAGGGAC
Statistics
Matches: 300, Mismatches: 31, Indels: 25
0.84 0.09 0.07
Matches are distributed among these distances:
116 24 0.08
117 213 0.71
118 60 0.20
119 3 0.01
ACGTcount: A:0.33, C:0.04, G:0.30, T:0.34
Consensus pattern (117 bp):
TCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTAAAAGGTTCGGGTCAAAAA
TGGGATTTTTGGAAGTTCGGGGTAAAATGGTAATTTTTGGAAGAGTTAGAGG
Found at i:599 original size:176 final size:175
Alignment explanation
Indices: 298--753 Score: 613
Period size: 176 Copynumber: 2.6 Consensus size: 175
288 AAGTTCGGAA
* * * * *
298 TCAAAAATGGGATTTTTGGAAGTTCAAGAGTAAAATGGTAATTTTT-AAAAGGTTCG-GATCAAA
1 TCAAAAATGGGATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTGGAAA-GTTCGAGGTCAAA
* * *
361 AATGGGATTTTTGGAAGTTTTGGGGTAAAATGGTAATTTTTAGAAGATTTAGGGTAAAAAATGGG
65 AATGGGATTTTTGGAAG-TTCGGGGTAAAATGGTAATTTTTAAAAGAGTTAGGGTAAAAAATGGG
* *
426 ATTTGTGGAAGTTCGGGGGT-AAATGGTAATTTTTGGAAAGTTTAG-GG
129 ATTT-TGGAAGTTCGAGGGTAAAATGGTAATTTTTGG-AAGGTTAGAGG
* * *
473 TTAAAAATGAGATTTTTGGAAGTTCGGGGGTAAAATGATAATTTTTGGAAAGTTCGAGGTCAAAA
1 TCAAAAATGGGATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTGGAAAGTTCGAGGTCAAAA
*
538 ATGGGATTTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTAAAAG-GTTCGGTGCT-AAAAATGG
66 ATGGGATTTTTGGAAGTTCG-GGGTAAAATGGTAATTTTTAAAAGAGTTAGG-G-TAAAAAATGG
* *
601 GATTTTGGGAGTTCGAGGGTAAAATGGTAATTTTTGGAAGGTTCGAGG
128 GATTTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAAGGTTAGAGG
*
649 TCAAAAATGGGATTTTTGGAAGTTCTGGGGTAAAATGGA-AATTTTTGG-AAGATTCGAGGTCAA
1 TCAAAAATGGGATTTTTGGAAGTTCAGGGGTAAAAT-GATAATTTTTGGAAAG-TTCGAGGTCAA
712 AAATGGGATTTTTGGAAGTTCGGTGGTAAAATGGTAATTTTT
64 AAATGGGATTTTTGGAAGTTCGG-GGTAAAATGGTAATTTTT
754 GGAAGGTTTA
Statistics
Matches: 252, Mismatches: 19, Indels: 19
0.87 0.07 0.07
Matches are distributed among these distances:
175 75 0.30
176 174 0.69
177 3 0.01
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (175 bp):
TCAAAAATGGGATTTTTGGAAGTTCAGGGGTAAAATGATAATTTTTGGAAAGTTCGAGGTCAAAA
ATGGGATTTTTGGAAGTTCGGGGTAAAATGGTAATTTTTAAAAGAGTTAGGGTAAAAAATGGGAT
TTTGGAAGTTCGAGGGTAAAATGGTAATTTTTGGAAGGTTAGAGG
Found at i:2483 original size:15 final size:15
Alignment explanation
Indices: 2465--2507 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
2455 TTTTGGGTAG
2465 TTTGTAATTGGACCA
1 TTTGTAATTGGACCA
*
2480 TTTGTATTTGGACCA
1 TTTGTAATTGGACCA
*
2495 TCTGTAATTGGAC
1 TTTGTAATTGGAC
2508 TTTGTTTTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (15 bp):
TTTGTAATTGGACCA
Found at i:2546 original size:17 final size:16
Alignment explanation
Indices: 2524--2589 Score: 78
Period size: 17 Copynumber: 3.9 Consensus size: 16
2514 TTGGACTTTT
*
2524 TAAATTTAATTTTATAA
1 TAAATTTAATTTCA-AA
2541 TAAATTTAAATTTCAAA
1 TAAATTT-AATTTCAAA
2558 TAAATTTAAATTTCAAA
1 TAAATTT-AATTTCAAA
* *
2575 TAAACTTAAATTCAA
1 TAAATTTAATTTCAA
2590 TTTCCAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.16
17 32 0.71
18 6 0.13
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAATTTAATTTCAAA
Found at i:2584 original size:23 final size:22
Alignment explanation
Indices: 2558--2600 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
2548 AAATTTCAAA
2558 TAAATTTAAATTTCAAATAAACT
1 TAAA-TTAAATTTCAAATAAACT
* *
2581 TAAATTCAATTTCCAATAAA
1 TAAATTAAATTTCAAATAAA
2601 TCCAGACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TAAATTAAATTTCAAATAAACT
Found at i:5245 original size:54 final size:53
Alignment explanation
Indices: 5177--5334 Score: 145
Period size: 54 Copynumber: 2.9 Consensus size: 53
5167 GTAAATCGGA
* * * * *
5177 TTGTAGAAATCAATGGCTCTGCAATCGATTTAATACTCTTAATGTAAATTCGAT
1 TTGTA-AAATCAATGGTTATGCAATCGATTTAATACTCTTAACGTAAATTCAAG
* * * * * *
5231 TTGTAAAAGTCAATGATTGTGCGATTGATTTAATATTCTTCACGTAAATTCAAG
1 TTGTAAAA-TCAATGGTTATGCAATCGATTTAATACTCTTAACGTAAATTCAAG
* * * * *
5285 TTGTAAGAATTAATTGTTATGCAATCGATCTAATACTTTTTACGTAAATT
1 TTGTAA-AATCAATGGTTATGCAATCGATTTAATACTCTTAACGTAAATT
5335 TGGGTGTTAG
Statistics
Matches: 82, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
53 3 0.04
54 77 0.94
55 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.40
Consensus pattern (53 bp):
TTGTAAAATCAATGGTTATGCAATCGATTTAATACTCTTAACGTAAATTCAAG
Found at i:5620 original size:126 final size:126
Alignment explanation
Indices: 5395--5646 Score: 378
Period size: 126 Copynumber: 2.0 Consensus size: 126
5385 TAAATTTGGA
* ** *
5395 TTGATATTGTGATTGACATATAACTCTTTGCGTAAATTTAGATTGATATTGTTCGCGGTTATATT
1 TTGATATTGTGATTGACATATAACTCTTTGCGTAAATTTAGATTGACATTGCCCGCGGTTACATT
* * *
5460 TTTAACATCCTACCATATAAATTCGGGTTGTAAGAACCAACAATTGTGTAATCAACCCAAT
66 TTTAACATCCTACCACATAAATCCGGATTGTAAGAACCAACAATTGTGTAATCAACCCAAT
* * * *
5521 TTGATATTGTGATTGGCATATAATTTTTTGCGTAAATTTAGATTGACATTGCCCGCGGTTGCATT
1 TTGATATTGTGATTGACATATAACTCTTTGCGTAAATTTAGATTGACATTGCCCGCGGTTACATT
* * *
5586 TTTGATATCCTACCACATAAATCCGGATTGTAAGAATCAACAATTGTGTAATCAACCCAAT
66 TTTAACATCCTACCACATAAATCCGGATTGTAAGAACCAACAATTGTGTAATCAACCCAAT
5647 ACTCACTTTA
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
126 112 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (126 bp):
TTGATATTGTGATTGACATATAACTCTTTGCGTAAATTTAGATTGACATTGCCCGCGGTTACATT
TTTAACATCCTACCACATAAATCCGGATTGTAAGAACCAACAATTGTGTAATCAACCCAAT
Found at i:6694 original size:27 final size:26
Alignment explanation
Indices: 6664--6718 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
6654 TATATTGTTC
*
6664 TATTTTA-ATATTTAATAATTTTATATA
1 TATTTTATATATTGAA-AATTTT-TATA
*
6691 TATTTTATTTATTGAAAATTTTTATA
1 TATTTTATATATTGAAAATTTTTATA
6717 TA
1 TA
6719 GTCATCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.24
27 13 0.52
28 6 0.24
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (26 bp):
TATTTTATATATTGAAAATTTTTATA
Found at i:7802 original size:28 final size:27
Alignment explanation
Indices: 7771--7844 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 27
7761 AGAAAAAATT
7771 TTAAATGTAAGAAAAAGACATTAAAACA
1 TTAAATGTAAGAAAAA-ACATTAAAACA
* * *
7799 TTAAATGCGT-GGAAAAACCATTAAGACA
1 TTAAAT--GTAAGAAAAAACATTAAAACA
*
7827 TTAAATGTAGGGAAAAAA
1 TTAAATGTA-AGAAAAAA
7845 ACTACTGTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
26 2 0.05
28 28 0.74
29 6 0.16
30 2 0.05
ACGTcount: A:0.54, C:0.08, G:0.16, T:0.22
Consensus pattern (27 bp):
TTAAATGTAAGAAAAAACATTAAAACA
Found at i:7913 original size:23 final size:22
Alignment explanation
Indices: 7875--7919 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7865 ACTAGTGTTT
*
7875 TTTTTTTTTTTCATTTTCTTAA
1 TTTTTTTTTATCATTTTCTTAA
*
7897 TTTTTTTTTATCAATTTTTTTAA
1 TTTTTTTTTATC-ATTTTCTTAA
7920 ATACACTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (22 bp):
TTTTTTTTTATCATTTTCTTAA
Found at i:12568 original size:20 final size:19
Alignment explanation
Indices: 12521--12573 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
12511 AATAATGAAA
*
12521 AATAAATTCA-AATTTAATT
1 AATAAATT-ATAATTTAAAT
12540 AATACAATTATAATTTAACAT
1 AATA-AATTATAATTTAA-AT
*
12561 AATAAATTTTAAT
1 AATAAATTATAAT
12574 ATATTTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 5 0.17
20 19 0.66
21 5 0.17
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (19 bp):
AATAAATTATAATTTAAAT
Found at i:14705 original size:20 final size:20
Alignment explanation
Indices: 14680--14731 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
14670 CACACGGTCT
14680 AGCCCGTGTGGCATGGGTGC
1 AGCCCGTGTGGCATGGGTGC
14700 AGCCCGTGTGGCATGGGTGC
1 AGCCCGTGTGGCATGGGTGC
*
14720 AGCTCGTGTGGC
1 AGCCCGTGTGGC
14732 CCTTGTACCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.10, C:0.25, G:0.44, T:0.21
Consensus pattern (20 bp):
AGCCCGTGTGGCATGGGTGC
Found at i:22919 original size:31 final size:31
Alignment explanation
Indices: 22884--22945 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
22874 ATGATTACTT
*
22884 AACTATTTAAAAGTTTTTATTTAAGTCACTG
1 AACTATTCAAAAGTTTTTATTTAAGTCACTG
22915 AACTATTCAAAAGTTTTTATTTAAGTCACTG
1 AACTATTCAAAAGTTTTTATTTAAGTCACTG
22946 GGTTGTTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (31 bp):
AACTATTCAAAAGTTTTTATTTAAGTCACTG
Found at i:24361 original size:18 final size:18
Alignment explanation
Indices: 24338--24372 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
24328 CAAATTTTTA
24338 TTTTAATATTT-TTATATG
1 TTTTAAT-TTTATTATATG
24356 TTTTAATTTTATTATAT
1 TTTTAATTTTATTATAT
24373 ATATTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTAATTTTATTATATG
Found at i:24576 original size:28 final size:28
Alignment explanation
Indices: 24536--24592 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
24526 TTTTACGTTC
*
24536 GTTTAATAAACGAACGAACACGAACAGA
1 GTTTAATAAACGAACGAACACAAACAGA
24564 GTTTAATAAACGAACGAACACAAACAGA
1 GTTTAATAAACGAACGAACACAAACAGA
24592 G
1 G
24593 GTGTGTTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.51, C:0.18, G:0.18, T:0.14
Consensus pattern (28 bp):
GTTTAATAAACGAACGAACACAAACAGA
Found at i:24748 original size:12 final size:12
Alignment explanation
Indices: 24733--24774 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
24723 GTTCAATTAT
24733 ATGTTCGTGAAC
1 ATGTTCGTGAAC
*
24745 ATGTTCGAT-TA-
1 ATGTTCG-TGAAC
24756 ATGTTCGTGAAC
1 ATGTTCGTGAAC
24768 ATGTTCG
1 ATGTTCG
24775 ATTAAGTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 1 0.04
11 8 0.32
12 15 0.60
13 1 0.04
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (12 bp):
ATGTTCGTGAAC
Found at i:24763 original size:23 final size:23
Alignment explanation
Indices: 24712--24797 Score: 111
Period size: 23 Copynumber: 3.7 Consensus size: 23
24702 ATTAACATTA
* *
24712 TTCGTGAACGTGTTCAATTATATG
1 TTCGTGAACATGTTCGATTA-ATG
24736 TTCGTGAACATGTTCGATTAATG
1 TTCGTGAACATGTTCGATTAATG
24759 TTCGTGAACATGTTCGATTAA-G
1 TTCGTGAACATGTTCGATTAATG
**
24781 TTAAATGAACATGTTCG
1 TT-CGTGAACATGTTCG
24798 TGAACATTAA
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
22 3 0.05
23 36 0.63
24 18 0.32
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (23 bp):
TTCGTGAACATGTTCGATTAATG
Found at i:24807 original size:23 final size:23
Alignment explanation
Indices: 24763--24808 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
24753 TTAATGTTCG
* *
24763 TGAACATGTTCGATTAAGTTAAA
1 TGAACATGTTCGATGAAATTAAA
24786 TGAACATGTTCG-TGAACATTAAA
1 TGAACATGTTCGATGAA-ATTAAA
24809 CAAACGAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (23 bp):
TGAACATGTTCGATGAAATTAAA
Found at i:30147 original size:21 final size:22
Alignment explanation
Indices: 30097--30156 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
30087 AACTGTGTAG
***
30097 ATTTCTACCGATACCTTTACTA
1 ATTTCTACCGATACAAGTACTA
30119 ATTT-TACCGATACAAGTA-TA
1 ATTTCTACCGATACAAGTACTA
30139 ATTTCTACCGATACAAGT
1 ATTTCTACCGATACAAGT
30157 CATGCAACTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.18
21 24 0.71
22 4 0.12
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (22 bp):
ATTTCTACCGATACAAGTACTA
Found at i:30955 original size:51 final size:51
Alignment explanation
Indices: 30829--31109 Score: 377
Period size: 51 Copynumber: 5.5 Consensus size: 51
30819 TTTCATTTAA
* ** * *
30829 TACTCACGATGACA-TATAGTCATCAGACCCCTTTGTTCCGTATAGGAATTCATA
1 TACTCACGATGACACT-TAGTCATCGGA--CCTTTAATCCGTAAAGG-ATTCATT
* * *
30883 TACTCACGATGACA-TTGAGTCATCGGACCTTTAATTCGTCATGGATTCATT
1 TACTCACGATGACACTT-AGTCATCGGACCTTTAATCCGTAAAGGATTCATT
* *
30934 TACTCGCAATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
*
30985 TACTCATGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
* * *
31036 TACTCATGATGACTCTTAGTCATCGGACCTTTAATCCGTAAGGGATTCATT
1 TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
31087 TACTCACGATGACACTTAGTCAT
1 TACTCACGATGACACTTAGTCAT
31110 TGAACTCTTT
Statistics
Matches: 205, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
51 167 0.81
52 13 0.06
53 1 0.00
54 24 0.12
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (51 bp):
TACTCACGATGACACTTAGTCATCGGACCTTTAATCCGTAAAGGATTCATT
Found at i:38927 original size:29 final size:29
Alignment explanation
Indices: 38885--38945 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
38875 AGTACTTGTT
38885 GTGGTAAGTTTTGGAAGTGACTAATTGAA
1 GTGGTAAGTTTTGGAAGTGACTAATTGAA
38914 GTGGTAAGTTTTGGAAGTGACTAATTGAA
1 GTGGTAAGTTTTGGAAGTGACTAATTGAA
38943 GTG
1 GTG
38946 TCCACTTCGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.34
Consensus pattern (29 bp):
GTGGTAAGTTTTGGAAGTGACTAATTGAA
Found at i:38932 original size:16 final size:16
Alignment explanation
Indices: 38885--38932 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
38875 AGTACTTGTT
38885 GTGGTAAGTTTTGGAA
1 GTGGTAAGTTTTGGAA
*
38901 GTGACTAA---TT-GAA
1 GTG-GTAAGTTTTGGAA
38914 GTGGTAAGTTTTGGAA
1 GTGGTAAGTTTTGGAA
38930 GTG
1 GTG
38933 ACTAATTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
12 3 0.12
13 6 0.24
14 2 0.08
15 2 0.08
16 9 0.36
17 3 0.12
ACGTcount: A:0.27, C:0.02, G:0.35, T:0.35
Consensus pattern (16 bp):
GTGGTAAGTTTTGGAA
Found at i:40587 original size:67 final size:69
Alignment explanation
Indices: 40448--40610 Score: 195
Period size: 67 Copynumber: 2.4 Consensus size: 69
40438 ATTGATATAA
* * * * * * *
40448 TAACAAATCAAACTCTCAATATTTACATGGCTTTTTTTTTTTGTCGAGCAATATTTGCATGCCTA
1 TAACAAATTAAGCCCTCAATATTTACATGGCTCTTTGTTTTGGTCGAGCAATATTTACATGCCTA
40513 ATAT
66 ATAT
* *
40517 TAACAAATTAAGCCCTCAATATTTACA-GG-TCTTTGTTTTGGTCGAGCAATATTTATATGTCTA
1 TAACAAATTAAGCCCTCAATATTTACATGGCTCTTTGTTTTGGTCGAGCAATATTTACATGCCTA
*
40580 GTAT
66 ATAT
***
40584 TAACAAATTAAGAGATCAATATTTACA
1 TAACAAATTAAGCCCTCAATATTTACA
40611 ATTTTAGTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
67 55 0.68
68 2 0.02
69 24 0.30
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (69 bp):
TAACAAATTAAGCCCTCAATATTTACATGGCTCTTTGTTTTGGTCGAGCAATATTTACATGCCTA
ATAT
Found at i:41532 original size:36 final size:36
Alignment explanation
Indices: 41492--41568 Score: 154
Period size: 36 Copynumber: 2.1 Consensus size: 36
41482 GAACAACTTG
41492 TTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAA
1 TTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAA
41528 TTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAA
1 TTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAA
41564 TTCTT
1 TTCTT
41569 ATTTAATTCG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.21, C:0.27, G:0.05, T:0.47
Consensus pattern (36 bp):
TTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAA
Found at i:41698 original size:21 final size:21
Alignment explanation
Indices: 41674--41715 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
41664 TCTTCCTTCG
41674 CCAATTCTTATTTAATTCGTA
1 CCAATTCTTATTTAATTCGTA
41695 CCAATTCTTATTTAATTCGTA
1 CCAATTCTTATTTAATTCGTA
41716 GGGGTACACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.48
Consensus pattern (21 bp):
CCAATTCTTATTTAATTCGTA
Found at i:41757 original size:135 final size:135
Alignment explanation
Indices: 41512--41785 Score: 530
Period size: 135 Copynumber: 2.0 Consensus size: 135
41502 GCCAATTCTT
41512 ATTTAATTCGTACCAATTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAATTCTTATTTAATT
1 ATTTAATTCGTACCAATTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAATTCTTATTTAATT
*
41577 CGTAGGGGTACACCTTGCACTGACCTTCAAATGTTGGATAACAGCTCGTATTCAAAAGTTATATA
66 CGTAGGGGTACACCTTGCACTGACCTTCAAATGTTGGATAACAGCTCATATTCAAAAGTTATATA
41642 ATAGG
131 ATAGG
41647 ATTTAATTCGTACCAATTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAATTCTTATTTAATT
1 ATTTAATTCGTACCAATTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAATTCTTATTTAATT
*
41712 CGTAGGGGTACACCTTGCACTGACCTTCAAATGTTGGATAGCAGCTCATATTCAAAAGTTATATA
66 CGTAGGGGTACACCTTGCACTGACCTTCAAATGTTGGATAACAGCTCATATTCAAAAGTTATATA
41777 ATAGG
131 ATAGG
41782 ATTT
1 ATTT
41786 CGGTCCCAAA
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 137 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (135 bp):
ATTTAATTCGTACCAATTCTTCCTTCGCCAATTCTTATTTAATTCGTACCAATTCTTATTTAATT
CGTAGGGGTACACCTTGCACTGACCTTCAAATGTTGGATAACAGCTCATATTCAAAAGTTATATA
ATAGG
Found at i:44702 original size:43 final size:45
Alignment explanation
Indices: 44654--44740 Score: 117
Period size: 43 Copynumber: 2.0 Consensus size: 45
44644 CCATTGTAAA
* *
44654 TTTAATTATTTTTAATA-AT-TATTATATTTTCT-ATAATTTTATT
1 TTTAATTATTTTAAATATATATA-TATATATTCTAATAATTTTATT
*
44697 TTTAATTATTTTAAATATATATATATATATTCTAATATTTTTAT
1 TTTAATTATTTTAAATATATATATATATATTCTAATAATTTTAT
44741 GATTGTTTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 16 0.42
44 11 0.29
45 11 0.29
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (45 bp):
TTTAATTATTTTAAATATATATATATATATTCTAATAATTTTATT
Found at i:44707 original size:15 final size:15
Alignment explanation
Indices: 44659--44709 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
44649 GTAAATTTAA
44659 TTATTTTTAATAATT
1 TTATTTTTAATAATT
*
44674 ATTATATTTTCTATAATT
1 -TTAT-TTTT-AATAATT
*
44692 TTATTTTTAATTATT
1 TTATTTTTAATAATT
44707 TTA
1 TTA
44710 AATATATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 8 0.27
16 8 0.27
17 8 0.27
18 6 0.20
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTTTTAATAATT
Found at i:58234 original size:20 final size:17
Alignment explanation
Indices: 58209--58256 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 17
58199 TAATAAACAA
58209 AATATTTTTT-AAAATT
1 AATATTTTTTAAAAATT
58225 ATATAATATTTTTAAAAATT
1 A-AT-AT-TTTTTAAAAATT
58245 AATATTTTTTAA
1 AATATTTTTTAA
58257 GGTGAACGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 1 0.04
17 9 0.32
18 4 0.14
19 7 0.25
20 7 0.25
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AATATTTTTTAAAAATT
Found at i:58895 original size:70 final size:67
Alignment explanation
Indices: 58782--58915 Score: 196
Period size: 70 Copynumber: 2.0 Consensus size: 67
58772 ATAAACAATA
* * * * *
58782 TAATGGTTTTGCCTTTTAATTTAATAGGTAAATATTTATCAAAATGACATAATTTTACCTTTTAA
1 TAATGATTTTGACTTTTAATTTAAAAGGTAAACATTTATCAAAACGACATAATTTTACCTTTTAA
58847 CT
66 CT
58849 TAATGATTTTGACTTTTAACTTTAGAAAGGGTAAACATTTATCAAAACGACATAATTTTACCTTT
1 TAATGATTTTGACTTTTAA-TTTA-AAA-GGTAAACATTTATCAAAACGACATAATTTTACCTTT
58914 TA
63 TA
58916 TTATTCGGAC
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
67 17 0.29
68 4 0.07
69 2 0.03
70 36 0.61
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (67 bp):
TAATGATTTTGACTTTTAATTTAAAAGGTAAACATTTATCAAAACGACATAATTTTACCTTTTAA
CT
Found at i:59176 original size:18 final size:19
Alignment explanation
Indices: 59133--59183 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
59123 AATTTTTAAA
* *
59133 TATAAAAATTCAAAAAATAT
1 TATAAAAATT-ATATAATAT
59153 TA-AAAAATTATATAAT-T
1 TATAAAAATTATATAATAT
59170 TATAAAAATTATAT
1 TATAAAAATTATAT
59184 TTTTAACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 3 0.11
18 16 0.57
19 7 0.25
20 2 0.07
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (19 bp):
TATAAAAATTATATAATAT
Found at i:60283 original size:16 final size:17
Alignment explanation
Indices: 60258--60298 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
60248 TTTTACATTT
60258 AAAT-ATTATA-TATTC
1 AAATAATTATATTATTC
60273 AAATAATTATATTTATTC
1 AAATAATTATA-TTATTC
60291 AATATAAT
1 AA-ATAAT
60299 ATAACCGTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
18 7 0.32
19 5 0.23
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
AAATAATTATATTATTC
Found at i:62292 original size:3 final size:3
Alignment explanation
Indices: 62284--62323 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
62274 CGTCAAAAAA
*
62284 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
62324 TTCACAACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:62474 original size:2 final size:2
Alignment explanation
Indices: 62467--62497 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
62457 GAAAGTTCGT
62467 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62498 TTGTGGGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65872 original size:23 final size:25
Alignment explanation
Indices: 65827--65875 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
65817 TCTCATACCT
* *
65827 TATATTTTAAATTTAATTATTTTTA
1 TATATTTAAAATTTAAGTATTTTTA
65852 TATATTTAAAATTT-AGT-TTTTTA
1 TATATTTAAAATTTAAGTATTTTTA
65875 T
1 T
65876 TTCAAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
24 2 0.09
25 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
TATATTTAAAATTTAAGTATTTTTA
Found at i:68864 original size:2 final size:2
Alignment explanation
Indices: 68859--68892 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
68849 TAAAAAATTA
68859 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68893 TAATAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72300 original size:57 final size:57
Alignment explanation
Indices: 72172--72300 Score: 213
Period size: 57 Copynumber: 2.3 Consensus size: 57
72162 CCGCAGCGGC
* **
72172 GCCATAGCCATAGCCGCCTTCGTGATGAACTTCTCCCTTGTGCTCAGTGGCGCCATA
1 GCCATAGCCATGGCCGCCTTCGTGATGAACTTCTCCCTTGTGCTCAGCAGCGCCATA
*
72229 GCCATAGCCATGGCCGCCTTCGTGATGACCTTCTCCCTTGTGCTCAGCAGCGCCATA
1 GCCATAGCCATGGCCGCCTTCGTGATGAACTTCTCCCTTGTGCTCAGCAGCGCCATA
*
72286 GCCATAGCCTTGGCC
1 GCCATAGCCATGGCC
72301 TTGGCCATGG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 67 1.00
ACGTcount: A:0.16, C:0.36, G:0.23, T:0.25
Consensus pattern (57 bp):
GCCATAGCCATGGCCGCCTTCGTGATGAACTTCTCCCTTGTGCTCAGCAGCGCCATA
Found at i:73688 original size:13 final size:14
Alignment explanation
Indices: 73658--73695 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
73648 TTTTTTTTTT
73658 ATTATAAAAATAAC
1 ATTATAAAAATAAC
* *
73672 ATTAAAAAAATTA-
1 ATTATAAAAATAAC
73685 ATTATAAAAAT
1 ATTATAAAAAT
73696 CATCTCTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (14 bp):
ATTATAAAAATAAC
Found at i:77852 original size:19 final size:20
Alignment explanation
Indices: 77830--77881 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
77820 TTTATAACAC
77830 TTTTAAAATT-TAAAAATTA
1 TTTTAAAATTATAAAAATTA
77849 TTTTAAAATTAATAAAAATTA
1 TTTTAAAATT-ATAAAAATTA
77870 ---TAAAATTATAAA
1 TTTTAAAATTATAAA
77882 GTTTTTACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 5 0.16
18 7 0.23
19 10 0.32
21 9 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TTTTAAAATTATAAAAATTA
Found at i:78005 original size:17 final size:16
Alignment explanation
Indices: 77982--78014 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
77972 TAATTTTTAA
*
77982 TAAAAAAGTTATAATT
1 TAAAAAAATTATAATT
77998 TAAAAAAATTATAATT
1 TAAAAAAATTATAATT
78014 T
1 T
78015 TTTTATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
TAAAAAAATTATAATT
Found at i:78022 original size:11 final size:12
Alignment explanation
Indices: 78006--78038 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
77996 TTTAAAAAAA
78006 TTATAATTTT-T
1 TTATAATTTTGT
78017 TTATAAATTTTGT
1 TTAT-AATTTTGT
78030 TTATAATTT
1 TTATAATTT
78039 GTATGACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 4 0.20
12 11 0.55
13 5 0.25
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (12 bp):
TTATAATTTTGT
Found at i:78901 original size:37 final size:35
Alignment explanation
Indices: 78860--78953 Score: 81
Period size: 37 Copynumber: 2.7 Consensus size: 35
78850 TTCCAATGTT
*
78860 TCTTTACTCTTTCCTTTTTCTCTTTATTTCCTTATTC
1 TCTTTACTCTTTCCTTTTTCTCTTTATTT-CTT-TAC
* * *
78897 TCTTT-CATCTTTTACTTTTTC-CATTGTTTCTTTAC
1 TCTTTAC-TC-TTTCCTTTTTCTCTTTATTTCTTTAC
78932 TCTTTA---TTTCCTTTTTCTCTTT
1 TCTTTACTCTTTCCTTTTTCTCTTT
78954 CATCCTTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
31 10 0.21
32 3 0.06
35 7 0.15
36 4 0.09
37 13 0.28
38 10 0.21
ACGTcount: A:0.09, C:0.24, G:0.01, T:0.66
Consensus pattern (35 bp):
TCTTTACTCTTTCCTTTTTCTCTTTATTTCTTTAC
Found at i:78918 original size:45 final size:48
Alignment explanation
Indices: 78861--78969 Score: 127
Period size: 52 Copynumber: 2.3 Consensus size: 48
78851 TCCAATGTTT
*
78861 CTTTACTCTTTCC-TT-TTT-CTCTTTATTTCCTTATTCTCTTTCATC
1 CTTTACTTTTTCCTTTCTTTACTCTTTATTTCCTTATTCTCTTTCATC
* *
78906 TTTTACTTTTTCCATTGTTTCTTTACTCTTTATTTCCTTTTTCTCTTTCATC
1 CTTTACTTTTTCC----TTTCTTTACTCTTTATTTCCTTATTCTCTTTCATC
78958 CTTTA-TTTTTCC
1 CTTTACTTTTTCC
78970 AAACCCAAGT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
45 11 0.21
50 2 0.04
51 10 0.19
52 30 0.57
ACGTcount: A:0.09, C:0.26, G:0.01, T:0.64
Consensus pattern (48 bp):
CTTTACTTTTTCCTTTCTTTACTCTTTATTTCCTTATTCTCTTTCATC
Found at i:88532 original size:6 final size:6
Alignment explanation
Indices: 88521--88545 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
88511 TACTTCGATT
88521 CTCTCC CTCTCC CTCTCC CTCTCC C
1 CTCTCC CTCTCC CTCTCC CTCTCC C
88546 CCACCGCCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CTCTCC
Found at i:91272 original size:38 final size:38
Alignment explanation
Indices: 91206--91280 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 38
91196 ATGTGACTTG
* * * *
91206 TTCCTCTATAACTGCATTCTAAGGTATAGAATGAAGTA
1 TTCCTCCATAACTGCATGCGAAGATATAGAATGAAGTA
* *
91244 TTCCTCCATAACTGCATGGGAAGATATAGATTGAAGT
1 TTCCTCCATAACTGCATGCGAAGATATAGAATGAAGT
91281 GTTCACTGCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (38 bp):
TTCCTCCATAACTGCATGCGAAGATATAGAATGAAGTA
Found at i:91292 original size:31 final size:31
Alignment explanation
Indices: 91254--91314 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
91244 TTCCTCCATA
* *
91254 ACTGCATGGGAAGATATAGATTGAAGTGTTC
1 ACTGCATGCGAAGATATAGAATGAAGTGTTC
*
91285 ACTGCATGCTAAGATATAGAATGAAGTGTT
1 ACTGCATGCGAAGATATAGAATGAAGTGTT
91315 TGCCTGGTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (31 bp):
ACTGCATGCGAAGATATAGAATGAAGTGTTC
Found at i:98986 original size:20 final size:19
Alignment explanation
Indices: 98954--98994 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
98944 TATAAAAAAC
*
98954 AAAAATTATAAAAATTGTA
1 AAAAATTAAAAAAATTGTA
98973 AAAAATATAAAAAAATTGTA
1 AAAAAT-TAAAAAAATTGTA
98993 AA
1 AA
98995 CTTTTATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (19 bp):
AAAAATTAAAAAAATTGTA
Found at i:99175 original size:12 final size:12
Alignment explanation
Indices: 99160--99188 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
99150 AAAAATAAAA
99160 ATAAAAAAAATT
1 ATAAAAAAAATT
99172 AT-AAAAAAATT
1 ATAAAAAAAATT
99183 ATAAAA
1 ATAAAA
99189 TACTTCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAAAAAAAATT
Found at i:99177 original size:11 final size:11
Alignment explanation
Indices: 99163--99188 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
99153 AATAAAAATA
99163 AAAAAAATTAT
1 AAAAAAATTAT
99174 AAAAAAATTAT
1 AAAAAAATTAT
99185 AAAA
1 AAAA
99189 TACTTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAAAAATTAT
Found at i:99262 original size:20 final size:21
Alignment explanation
Indices: 99209--99279 Score: 71
Period size: 19 Copynumber: 3.6 Consensus size: 21
99199 AGTACGATAA
99209 TTTTTAT-A-TTTTTTACGA-
1 TTTTTATAATTTTTTTACGAT
* *
99227 ATTTTAT-ATTTCTTTAC-AT
1 TTTTTATAATTTTTTTACGAT
99246 TTTTTATAATTTTTTTACGAT
1 TTTTTATAATTTTTTTACGAT
* *
99267 TTTATAAAATTTT
1 TTTTTATAATTTT
99280 ATAATTTTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 8 0.19
19 13 0.30
20 9 0.21
21 13 0.30
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.65
Consensus pattern (21 bp):
TTTTTATAATTTTTTTACGAT
Found at i:99288 original size:19 final size:19
Alignment explanation
Indices: 99266--99379 Score: 72
Period size: 20 Copynumber: 5.8 Consensus size: 19
99256 TTTTTTACGA
99266 TTTTATAAAATTTTATAAT
1 TTTTATAAAATTTTATAAT
*
99285 TTTTATACAATTTTAT-AT
1 TTTTATAAAATTTTATAAT
* * * *
99303 TTTTTTCCTAATTTTTAATAAA
1 TTTTAT--AAAATTTT-ATAAT
* * *
99325 ATTTA-AATATTTTTTATCAT
1 TTTTATAA-A-ATTTTATAAT
*
99345 TTTTATTAAAATTTAATAAT
1 TTTTA-TAAAATTTTATAAT
99365 TTTTAT-AAATTTTAT
1 TTTTATAAAATTTTAT
99380 TTTTTATCAT
Statistics
Matches: 71, Mismatches: 16, Indels: 17
0.68 0.15 0.16
Matches are distributed among these distances:
18 15 0.21
19 17 0.24
20 25 0.35
21 8 0.11
22 6 0.08
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTATAAAATTTTATAAT
Found at i:99288 original size:38 final size:38
Alignment explanation
Indices: 99205--99291 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 38
99195 TTTTAGTACG
**
99205 ATAATTTTTAT-ATTTTTTACGAATTTTATATTTCTTT
1 ATAATTTTTATAATTTTTTACGAATTTTATAAATCTTT
* *
99242 ACATTTTTTATAATTTTTTTACG-ATTTTATAAAAT-TTT
1 ATAATTTTTATAA-TTTTTTACGAATTTTAT-AAATCTTT
99280 ATAATTTTTATA
1 ATAATTTTTATA
99292 CAATTTTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
37 9 0.22
38 21 0.51
39 11 0.27
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (38 bp):
ATAATTTTTATAATTTTTTACGAATTTTATAAATCTTT
Found at i:99308 original size:29 final size:29
Alignment explanation
Indices: 99245--99379 Score: 103
Period size: 29 Copynumber: 4.6 Consensus size: 29
99235 TTTCTTTACA
* * *
99245 TTTTTTATAATTTTTTTACGATTTTATAA
1 TTTTTTATAATTTTTATACAATTTTATAT
**
99274 AATTTTATAATTTTTATACAATTTTATAT
1 TTTTTTATAATTTTTATACAATTTTATAT
* * *
99303 TTTTTTCCTAATTTTTAATA-AAATTTAAAT
1 TTTTTT-ATAATTTTT-ATACAATTTTATAT
* * *
99333 ATTTTTTATCATTTTTATTAAAATTTAATA-
1 -TTTTTTATAATTTTTA-TACAATTTTATAT
* *
99363 ATTTTTATAAATTTTAT
1 TTTTTTATAATTTTTAT
99380 TTTTTATCAT
Statistics
Matches: 83, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
28 1 0.01
29 42 0.51
30 25 0.30
31 15 0.18
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (29 bp):
TTTTTTATAATTTTTATACAATTTTATAT
Found at i:99349 original size:50 final size:47
Alignment explanation
Indices: 99226--99393 Score: 123
Period size: 48 Copynumber: 3.5 Consensus size: 47
99216 ATTTTTTACG
* *
99226 AATTTTATATTTCTTTA-CATTTTTTATAATTTTTTTACGATTTTATAA
1 AATTTAATATTT-TTTATCA-TTTTTATAATTTTTTTACAATTTTATAA
* * * *
99274 AATTTTATAATTTTTATACAATTTTAT-ATTTTTTTCCTAATTTTTAATAA
1 AATTTAATATTTTTTAT-CATTTTTATAATTTTTTTAC-AA-TTTT-ATAA
** * *
99324 AATTTAAATATTTTTTATCATTTTTATTAA-AATTTAATAATTTT-TATA
1 AATTT-AATATTTTTTATCATTTTTA-TAATTTTTTTACAATTTTATA-A
99372 AATTT--TATTTTTTATCATTTTT
1 AATTTAATATTTTTTATCATTTTT
99394 TACCAAATGT
Statistics
Matches: 99, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
45 17 0.17
47 15 0.15
48 24 0.24
49 10 0.10
50 18 0.18
51 14 0.14
52 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.62
Consensus pattern (47 bp):
AATTTAATATTTTTTATCATTTTTATAATTTTTTTACAATTTTATAA
Found at i:99377 original size:30 final size:30
Alignment explanation
Indices: 99276--99378 Score: 95
Period size: 30 Copynumber: 3.5 Consensus size: 30
99266 TTTTATAAAA
* * *
99276 TTTTATAATTTTT-ATACAATTT-TATATTT
1 TTTTATAATTTTTAATAAAATTTAAATA-AT
* *
99305 TTTTCCTAATTTTTAATAAAATTTAAATATT
1 TTTT-ATAATTTTTAATAAAATTTAAATAAT
* *
99336 TTTTATCATTTTTATTAAAATTT-AATAAT
1 TTTTATAATTTTTAATAAAATTTAAATAAT
*
99365 TTTTATAAATTTTA
1 TTTTATAATTTTTA
99379 TTTTTTATCA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
29 21 0.34
30 24 0.39
31 14 0.23
32 3 0.05
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (30 bp):
TTTTATAATTTTTAATAAAATTTAAATAAT
Found at i:100123 original size:36 final size:34
Alignment explanation
Indices: 100073--100140 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
100063 ACTTATCCAT
** *
100073 AATTATACCTTTTTTTACGAACTTCGAGTTTATTCC
1 AATTATACAATTTTTT--GAACTTCGAATTTATTCC
*
100109 AATTATACAATTTTTTGAATTTCGAATTTATT
1 AATTATACAATTTTTTGAACTTCGAATTTATT
100141 TAGATTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 14 0.50
36 14 0.50
ACGTcount: A:0.29, C:0.13, G:0.07, T:0.50
Consensus pattern (34 bp):
AATTATACAATTTTTTGAACTTCGAATTTATTCC
Found at i:108889 original size:85 final size:85
Alignment explanation
Indices: 108746--108915 Score: 340
Period size: 85 Copynumber: 2.0 Consensus size: 85
108736 ATATATTTAT
108746 ATATATAAAAGGAGGTCAGCAAATGATTTGTAGTAATCATCGAAGGGATCAAAAAAAGGAAAACG
1 ATATATAAAAGGAGGTCAGCAAATGATTTGTAGTAATCATCGAAGGGATCAAAAAAAGGAAAACG
108811 AAACCTTTTATTTCCCTTTC
66 AAACCTTTTATTTCCCTTTC
108831 ATATATAAAAGGAGGTCAGCAAATGATTTGTAGTAATCATCGAAGGGATCAAAAAAAGGAAAACG
1 ATATATAAAAGGAGGTCAGCAAATGATTTGTAGTAATCATCGAAGGGATCAAAAAAAGGAAAACG
108896 AAACCTTTTATTTCCCTTTC
66 AAACCTTTTATTTCCCTTTC
108916 CCTGCTTTAT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (85 bp):
ATATATAAAAGGAGGTCAGCAAATGATTTGTAGTAATCATCGAAGGGATCAAAAAAAGGAAAACG
AAACCTTTTATTTCCCTTTC
Found at i:114683 original size:15 final size:15
Alignment explanation
Indices: 114665--114694 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
114655 ATTCCTCAGA
*
114665 AAGCTCGATCTTAAG
1 AAGCTCAATCTTAAG
114680 AAGCTCAATCTTAAG
1 AAGCTCAATCTTAAG
114695 TGCCTTAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (15 bp):
AAGCTCAATCTTAAG
Found at i:114933 original size:47 final size:47
Alignment explanation
Indices: 114864--114954 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
114854 GGCCTAAGTA
*
114864 ATCTGTTCAGATTTTGTGTCCCTAAAAGCTTCTAGAATGTCGTGATT
1 ATCTGTTCAGATTTTGTGTCCCTAAAAGCTTCTAGAATATCGTGATT
*
114911 ATCTGTTCAGATTTTGTGTCCCTAAAGGCTTCTAGAATATCGTG
1 ATCTGTTCAGATTTTGTGTCCCTAAAAGCTTCTAGAATATCGTG
114955 CTTCATAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.40
Consensus pattern (47 bp):
ATCTGTTCAGATTTTGTGTCCCTAAAAGCTTCTAGAATATCGTGATT
Found at i:123410 original size:3 final size:3
Alignment explanation
Indices: 123404--123436 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
123394 CATGGCCATC
*
123404 TCT TCT TCT TCT TCT TCT TCT TCT TCT ACT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
123437 ACTTGGATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.64
Consensus pattern (3 bp):
TCT
Found at i:147561 original size:14 final size:14
Alignment explanation
Indices: 147538--147581 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
147528 TAAAATCAAG
147538 TAAATATTCAAACA
1 TAAATATTCAAACA
*
147552 TAATTATTCAAA-A
1 TAAATATTCAAACA
*
147565 -AAATATTTAAACA
1 TAAATATTCAAACA
147578 TAAA
1 TAAA
147582 ATATATGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 9 0.36
13 2 0.08
14 14 0.56
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (14 bp):
TAAATATTCAAACA
Found at i:147867 original size:18 final size:18
Alignment explanation
Indices: 147819--147870 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
147809 CATCCCTAAA
*
147819 TTTATTATCTAA-TAAAAT
1 TTTATT-TCTAATTAATAT
* **
147837 TTAATTTAAAATTAATAT
1 TTTATTTCTAATTAATAT
147855 TTTATTTCTAATTAAT
1 TTTATTTCTAATTAAT
147871 TTAAAATTAT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTATTTCTAATTAATAT
Found at i:155906 original size:22 final size:21
Alignment explanation
Indices: 155860--155907 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
155850 TTATTTATTA
*
155860 TTTTATTAAGAATTCATATAT
1 TTTTATTAAGAATTCATAAAT
*
155881 TTTTATTTAA-AATTCTTAAAT
1 TTTTA-TTAAGAATTCATAAAT
155902 CTTTTA
1 -TTTTA
155908 CACGACACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTTATTAAGAATTCATAAAT
Found at i:157491 original size:21 final size:21
Alignment explanation
Indices: 157462--157501 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
157452 TGAGTATTCC
* *
157462 AAATCTTTAAAAATGTTTTAA
1 AAATATTTAAAAATATTTTAA
*
157483 AAATATTTAATAATATTTT
1 AAATATTTAAAAATATTTT
157502 CACCAAAATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (21 bp):
AAATATTTAAAAATATTTTAA
Found at i:166839 original size:18 final size:18
Alignment explanation
Indices: 166807--166845 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
166797 CGGCGGTGGG
*
166807 TTTGGTTTCTCTTC-TTC
1 TTTGGTTGCTCTTCTTTC
166824 TTTGGTTGCTTCTTCTTTC
1 TTTGGTTGC-TCTTCTTTC
166843 TTT
1 TTT
166846 TCCTCGGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 5 0.26
19 6 0.32
ACGTcount: A:0.00, C:0.21, G:0.13, T:0.67
Consensus pattern (18 bp):
TTTGGTTGCTCTTCTTTC
Found at i:168062 original size:12 final size:12
Alignment explanation
Indices: 168036--168068 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
168026 CAATTTTAAA
*
168036 ATTATTAAT-CT
1 ATTATTATTACT
168047 ATTATTATTACT
1 ATTATTATTACT
168059 ATTATTATTA
1 ATTATTATTA
168069 TTTATACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTATTATTACT
Found at i:173122 original size:194 final size:192
Alignment explanation
Indices: 172754--173135 Score: 692
Period size: 194 Copynumber: 2.0 Consensus size: 192
172744 TTGGGATGGA
172754 TTTATGCCTTTAGATTATCATGTCCTTATATATACTGCTTGGTCATGGAATTTGTGTGAATTAAG
1 TTTATGCCTTTAGATTATCATGTCCTTATATATACTGCTTGGTCATGGAATTTGTGTGAATTAAG
*
172819 CTTAAGGAAAAGGGGGTAATATTGTAATTCATAAAGATTTTCTGTTGGCTGGGATTGCTTACGCC
66 CTTAAGGAAAAGGGGGTAATATTGTAATTCATAAAGATTTTCTGTTGGCTGGGATTGCTTACACC
172884 AGGAACTGAGGGTAAGAGTTGTATTTTAGGGCTTGATATTGGGTAAAAAGATGTGTTTGTAT
131 AGGAACTGAGGGTAAGAGTTGTATTTTAGGGCTTGATATTGGGTAAAAAGATGTGTTTGTAT
* *
172946 TTTATGCCTTTAGATTATCATGTCCTTATATATGCTTCTTGGTCATGGAATTTGTGTGAATTAAG
1 TTTATGCCTTTAGATTATCATGTCCTTATATATACTGCTTGGTCATGGAATTTGTGTGAATTAAG
*
173011 CTTAAGGAAAAGGAGGGTAATATTGTAATTCATAAAAGATTTTCTGTTGGCTGGGATTGCTTGCA
66 CTTAAGGAAAAGG-GGGTAATATTGTAATTCAT-AAAGATTTTCTGTTGGCTGGGATTGCTTACA
* *
173076 CCAGGAACTGAGGGTAAGAGTTGTATTTTAGGGGTTGATATTGGGTAGAAAGATGTGTTT
129 CCAGGAACTGAGGGTAAGAGTTGTATTTTAGGGCTTGATATTGGGTAAAAAGATGTGTTT
173136 ATGAGTCCCA
Statistics
Matches: 182, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
192 76 0.42
193 19 0.10
194 87 0.48
ACGTcount: A:0.27, C:0.09, G:0.26, T:0.38
Consensus pattern (192 bp):
TTTATGCCTTTAGATTATCATGTCCTTATATATACTGCTTGGTCATGGAATTTGTGTGAATTAAG
CTTAAGGAAAAGGGGGTAATATTGTAATTCATAAAGATTTTCTGTTGGCTGGGATTGCTTACACC
AGGAACTGAGGGTAAGAGTTGTATTTTAGGGCTTGATATTGGGTAAAAAGATGTGTTTGTAT
Found at i:175767 original size:28 final size:28
Alignment explanation
Indices: 175727--175782 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
175717 GTCATGAAGA
175727 GGTGAGCACCCATGTACCTATTAGGCTT
1 GGTGAGCACCCATGTACCTATTAGGCTT
175755 GGTGAGCACCCATGTACCTATTAGGCTT
1 GGTGAGCACCCATGTACCTATTAGGCTT
175783 TCCTATCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (28 bp):
GGTGAGCACCCATGTACCTATTAGGCTT
Found at i:181570 original size:10 final size:10
Alignment explanation
Indices: 181556--181589 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
181546 TTCATGAGAT
*
181556 GGGTTGGGTT
1 GGGTTGGGTC
181566 GGGTTGGGTC
1 GGGTTGGGTC
*
181576 GGGTCGGGTC
1 GGGTTGGGTC
181586 GGGT
1 GGGT
181590 CAGATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.09, G:0.62, T:0.29
Consensus pattern (10 bp):
GGGTTGGGTC
Found at i:181800 original size:28 final size:27
Alignment explanation
Indices: 181756--181814 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
181746 ATATTTATAT
*
181756 TATATTATTTTAATATTTAATAATTTTA
1 TATATTATTTTAATATTGAA-AATTTTA
* *
181784 TATATT-TTTTATTTATTGAAATTTTTA
1 TATATTATTTTA-ATATTGAAAATTTTA
181811 TATA
1 TATA
181815 GTCATATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 15 0.56
28 12 0.44
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.63
Consensus pattern (27 bp):
TATATTATTTTAATATTGAAAATTTTA
Found at i:182246 original size:15 final size:15
Alignment explanation
Indices: 182223--182253 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
182213 AAAAAAAAAC
*
182223 AAGTTTAACTTTTAT
1 AAGTGTAACTTTTAT
182238 AAGTGTAACTTTTAT
1 AAGTGTAACTTTTAT
182253 A
1 A
182254 CTTAACTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (15 bp):
AAGTGTAACTTTTAT
Found at i:187157 original size:30 final size:30
Alignment explanation
Indices: 187123--187202 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
187113 GGTCAAAATT
* *
187123 TTTTTTTACCCACTTTTAAGGGTCCAAAAG
1 TTTTTTTACCAACTTTTAAGGGTCCAAAAA
***
187153 TTTTTTTTTTAACTTTTCAA-GGTCCAAAAA
1 TTTTTTTACCAACTTTT-AAGGGTCCAAAAA
*
187183 TTATTTTACCAACTTTTAAG
1 TTTTTTTACCAACTTTTAAG
187203 TGATTTAATT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
29 2 0.05
30 35 0.90
31 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46
Consensus pattern (30 bp):
TTTTTTTACCAACTTTTAAGGGTCCAAAAA
Found at i:187488 original size:21 final size:20
Alignment explanation
Indices: 187453--187496 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
187443 AAATTGTTAA
187453 AAAATATTTTAATATTAATTG
1 AAAATATTTTAATA-TAATTG
*
187474 AAAATA-TTTACATATAGTTG
1 AAAATATTTTA-ATATAATTG
187494 AAA
1 AAA
187497 TTTCTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (20 bp):
AAAATATTTTAATATAATTG
Found at i:199091 original size:58 final size:59
Alignment explanation
Indices: 198988--199305 Score: 183
Period size: 59 Copynumber: 5.5 Consensus size: 59
198978 CTTAAAAGGT
* * * * *
198988 CCTTAAACTTTTTCAAAATCACA-TTTAACTCCTAAACTTTTC-AAAATTATATTATGA
1 CCTTAAACTTTTTAAAAATTACATTTTAACACCTAAACTTTCCAAAAATCATATTATGA
* * *
199045 CCTTTAAACTTTTTAAAAATTACATTTTAACACTTGAA-TTTCCAAAAATCATATTTTGA
1 CC-TTAAACTTTTTAAAAATTACATTTTAACACCTAAACTTTCCAAAAATCATATTATGA
* ** *** * * * * * *
199104 CCATAAACTTTCAAAAAATTACATTATGGTC-CCCAAACTTTACAAATATTACATTTTGA
1 CCTTAAACTTTTTAAAAATTACATT-TTAACACCTAAACTTTCCAAAAATCATATTATGA
* * * *
199163 CCCTTAAA-TGTTTCT-AAAATTGCATTTTAAC-CCTAAACTTTCCCAAAATCATATTTTAA
1 -CCTTAAACT-TTT-TAAAAATTACATTTTAACACCTAAACTTTCCAAAAATCATATTATGA
** *** * *
199222 CCCCAAACTTCCCAAAAATTGCATTTTGAAC-CCTAAACTTTCCAAAATTACAT-TT-T-A
1 CCTTAAACTTTTTAAAAATTACATTTT-AACACCTAAACTTTCCAAAAAT-CATATTATGA
* *
199279 TCTTAAACTTTTCT-GAAATTACATTTT
1 CCTTAAACTTTT-TAAAAATTACATTTT
199306 GACCACAAAT
Statistics
Matches: 198, Mismatches: 50, Indels: 26
0.72 0.18 0.09
Matches are distributed among these distances:
57 21 0.11
58 66 0.33
59 90 0.45
60 21 0.11
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.39
Consensus pattern (59 bp):
CCTTAAACTTTTTAAAAATTACATTTTAACACCTAAACTTTCCAAAAATCATATTATGA
Found at i:199105 original size:59 final size:58
Alignment explanation
Indices: 198988--199305 Score: 186
Period size: 58 Copynumber: 5.5 Consensus size: 58
198978 CTTAAAAGGT
* * * * *
198988 CCTTAAACTTTTTCAAAATCACA-TTTAACTCCTAAACTTTTCAAAATTATATTATGA
1 CCTTAAACTTTTTAAAAATTACATTTTAACACCTAAACTTTCCAAAATCATATTATGA
* * *
199045 CCTTTAAACTTTTTAAAAATTACATTTTAACACTTGAA-TTTCCAAAAATCATATTTTGA
1 CC-TTAAACTTTTTAAAAATTACATTTTAACACCTAAACTTTCC-AAAATCATATTATGA
* ** *** * * * * *
199104 CCATAAACTTTCAAAAAATTACATTATGGTC-CCCAAACTTTACAAATATTACATTTTGA
1 CCTTAAACTTTTTAAAAATTACATT-TTAACACCTAAACTTTCCAAA-ATCATATTATGA
* * *
199163 CCCTTAAA-TGTTTCT-AAAATTGCATTTTAAC-CCTAAACTTTCCCAAAATCATATTTTAA
1 -CCTTAAACT-TTT-TAAAAATTACATTTTAACACCTAAACTTT-CCAAAATCATATTATGA
** *** * * * *
199222 CCCCAAACTTCCCAAAAATTGCATTTTGAAC-CCTAAACTTTCCAAAATTACATT-TTA
1 CCTTAAACTTTTTAAAAATTACATTTT-AACACCTAAACTTTCCAAAATCATATTATGA
* *
199279 TCTTAAACTTTTCT-GAAATTACATTTT
1 CCTTAAACTTTT-TAAAAATTACATTTT
199306 GACCACAAAT
Statistics
Matches: 199, Mismatches: 48, Indels: 28
0.72 0.17 0.10
Matches are distributed among these distances:
57 22 0.11
58 79 0.40
59 76 0.38
60 22 0.11
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.39
Consensus pattern (58 bp):
CCTTAAACTTTTTAAAAATTACATTTTAACACCTAAACTTTCCAAAATCATATTATGA
Found at i:199115 original size:29 final size:29
Alignment explanation
Indices: 199002--199309 Score: 142
Period size: 29 Copynumber: 10.6 Consensus size: 29
198992 AAACTTTTTC
* *
199002 AAAATCACA-TTTAACTCCTAAACTTTTC-
1 AAAATCACATTTTGAC-CCTAAACTTTCCA
* * * * **
199030 AAAATTATATTATGACCTTTAAACTTTTTA
1 AAAATCACATTTTGACC-CTAAACTTTCCA
* * * *
199060 AAAATTACATTTTAACACTTGAA-TTTCCA
1 AAAATCACATTTTGAC-CCTAAACTTTCCA
* * *
199089 AAAATCATATTTTGACCATAAACTTTCAA
1 AAAATCACATTTTGACCCTAAACTTTCCA
* * * * *
199118 AAAATTACATTATGGTCCCCAAACTTTACA
1 AAAATCACATT-TTGACCCTAAACTTTCCA
* * * *
199148 AATATTACATTTTGACCCTTAAA-TGTTTCT
1 AAAATCACATTTTGACCC-TAAACT-TTCCA
** * *
199178 AAAATTGCATTTTAACCCTAAACTTTCCC
1 AAAATCACATTTTGACCCTAAACTTTCCA
* * * *
199207 AAAATCATATTTTAACCCCAAACTTCCCA
1 AAAATCACATTTTGACCCTAAACTTTCCA
**
199236 AAAATTGCATTTTGAACCCTAAACTTTCC-
1 AAAATCACATTTTG-ACCCTAAACTTTCCA
* * * * *
199265 AAAATTACATTTT-ATCTTAAACTTTTCT
1 AAAATCACATTTTGACCCTAAACTTTCCA
* *
199293 GAAATTACATTTTGACC
1 AAAATCACATTTTGACC
199310 ACAAATTTTT
Statistics
Matches: 213, Mismatches: 55, Indels: 23
0.73 0.19 0.08
Matches are distributed among these distances:
27 11 0.05
28 24 0.11
29 104 0.49
30 73 0.34
31 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (29 bp):
AAAATCACATTTTGACCCTAAACTTTCCA
Found at i:199205 original size:118 final size:117
Alignment explanation
Indices: 199021--199305 Score: 294
Period size: 118 Copynumber: 2.4 Consensus size: 117
199011 TTTAACTCCT
* * * * * *
199021 AAACTTTTCAAAATTATATTATGACCTTTAAACTTTTTAAAAATTACATTTTAACACTTGAATTT
1 AAACTTTACAAAATTACATTTTGACCCTTAAACTTTTTAAAAATTACATTTTAACACCTAAATTT
* * * **
199086 CCAAAAATCATATTTTGACCATAAACTTTCAAAAAATTACATTATGGTCCCC
66 CCAAAAATCATATTTTAACCACAAACTTCCAAAAAATTACATTATGAACCCC
*
199138 AAACTTTACAAATATTACATTTTGACCCTTAAA-TGTTTCT-AAAATTGCATTTTAAC-CCTAAA
1 AAACTTTACAAA-ATTACATTTTGACCCTTAAACT-TTT-TAAAAATTACATTTTAACACCTAAA
* * * * * *
199200 CTTTCCCAAAATCATATTTTAACCCCAAACTTCCCAAAAATTGCATTTTGAACCCT
63 -TTTCCAAAAATCATATTTTAACCACAAACTTCCAAAAAATTACATTATGAACCCC
* * *
199256 AAACTTTCCAAAATTACATTTT-A-TCTTAAACTTTTCT-GAAATTACATTTT
1 AAACTTTACAAAATTACATTTTGACCCTTAAACTTTT-TAAAAATTACATTTT
199306 GACCACAAAT
Statistics
Matches: 141, Mismatches: 22, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
115 22 0.16
116 2 0.01
117 26 0.18
118 90 0.64
119 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.39
Consensus pattern (117 bp):
AAACTTTACAAAATTACATTTTGACCCTTAAACTTTTTAAAAATTACATTTTAACACCTAAATTT
CCAAAAATCATATTTTAACCACAAACTTCCAAAAAATTACATTATGAACCCC
Found at i:205744 original size:4 final size:4
Alignment explanation
Indices: 205735--205774 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
205725 TTTTTCTTTT
205735 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
205775 CACACATGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:206534 original size:5 final size:5
Alignment explanation
Indices: 206524--206548 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
206514 AAAGACTTAG
206524 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
206549 GAGTATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:206628 original size:14 final size:14
Alignment explanation
Indices: 206605--206634 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
206595 TTATATTTAA
*
206605 TTTATGTTTATCTT
1 TTTATATTTATCTT
206619 TTTATATTTATCTT
1 TTTATATTTATCTT
206633 TT
1 TT
206635 AGAGTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTATATTTATCTT
Found at i:208393 original size:15 final size:15
Alignment explanation
Indices: 208338--208387 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 15
208328 GTGCATAATG
208338 AAATAAAAT-AAAAC
1 AAATAAAATCAAAAC
* **
208352 ATATAAGTTC-AAA-
1 AAATAAAATCAAAAC
208365 AAATAAAATCAAAAC
1 AAATAAAATCAAAAC
208380 AAATAAAA
1 AAATAAAA
208388 ATAAAAGTAC
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
13 7 0.26
14 12 0.44
15 8 0.30
ACGTcount: A:0.72, C:0.08, G:0.02, T:0.18
Consensus pattern (15 bp):
AAATAAAATCAAAAC
Found at i:210975 original size:18 final size:18
Alignment explanation
Indices: 210948--210990 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
210938 TATTTATGAT
*
210948 TAAT-ATAAAAATAATTA
1 TAATAATAAAAATAAATA
*
210965 TAATAATAAAATTAAATA
1 TAATAATAAAAATAAATA
*
210983 TTATAATA
1 TAATAATA
210991 TAAGACACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAAAAATAAATA
Found at i:216911 original size:22 final size:22
Alignment explanation
Indices: 216883--216925 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
216873 CATAGATGAT
216883 AAAATAA-ATATAAAGATACCAA
1 AAAATAATATATAAA-ATACCAA
*
216905 AAAATAATATATTAAATACCA
1 AAAATAATATATAAAATACCA
216926 TTTTATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.65, C:0.09, G:0.02, T:0.23
Consensus pattern (22 bp):
AAAATAATATATAAAATACCAA
Found at i:218450 original size:31 final size:31
Alignment explanation
Indices: 218366--218451 Score: 91
Period size: 31 Copynumber: 2.7 Consensus size: 31
218356 CCATGTATGG
* * *
218366 TATGGTATGAGTCACAAACTTGTATGAATCATG
1 TATGGTATTAGTCACAAAC-T-TATCAATCATC
* * *
218399 TATGGTATTAGTCTCGAACTTATCTATCATC
1 TATGGTATTAGTCACAAACTTATCAATCATC
*
218430 TATGGTATTTGTCACAAACTTA
1 TATGGTATTAGTCACAAACTTA
218452 GTAATAAAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 27 0.61
32 1 0.02
33 16 0.36
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.38
Consensus pattern (31 bp):
TATGGTATTAGTCACAAACTTATCAATCATC
Found at i:225072 original size:13 final size:14
Alignment explanation
Indices: 225054--225086 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
225044 CTATAAGAGT
225054 ATAAATA-TTAAAA
1 ATAAATATTTAAAA
225067 ATAAATATTTAAAA
1 ATAAATATTTAAAA
225081 A-AAATA
1 ATAAATA
225087 CATAAAGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAAATATTTAAAA
Found at i:227881 original size:32 final size:32
Alignment explanation
Indices: 227840--227906 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
227830 AATTAGTGAG
227840 GATACATTGGATGTTT-TTTAAGGCCATAATTT
1 GATACATTGGAT-TTTGTTTAAGGCCATAATTT
227872 GATACATTGGATTTTGTTTAAGGCCATAATTT
1 GATACATTGGATTTTGTTTAAGGCCATAATTT
227904 GAT
1 GAT
227907 GGGGGCCGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 3 0.09
32 31 0.91
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.43
Consensus pattern (32 bp):
GATACATTGGATTTTGTTTAAGGCCATAATTT
Found at i:231303 original size:10 final size:10
Alignment explanation
Indices: 231272--231306 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
231262 AAGTACAGAT
231272 ATAATTATAA
1 ATAATTATAA
*
231282 ATAATGTCTAA
1 ATAAT-TATAA
231293 ATAATTATAA
1 ATAATTATAA
231303 ATAA
1 ATAA
231307 AATTAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (10 bp):
ATAATTATAA
Found at i:237065 original size:23 final size:23
Alignment explanation
Indices: 237021--237065 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
237011 TTATTTTTGA
*
237021 TAATTGAAAATAAATATTAAATT
1 TAATTGAAAATAAATATAAAATT
*
237044 TAATT-AAATTAAATTATAAAAT
1 TAATTGAAAATAAA-TATAAAAT
237066 GCTAGGTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
TAATTGAAAATAAATATAAAATT
Found at i:240471 original size:15 final size:16
Alignment explanation
Indices: 240434--240474 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
240424 TGTCTTTTCA
*
240434 TATTGTTAAATTTTTT
1 TATTTTTAAATTTTTT
240450 TATTTTTAAATTTTTT
1 TATTTTTAAATTTTTT
*
240466 TTTTTTTAA
1 TATTTTTAA
240475 TATTATTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (16 bp):
TATTTTTAAATTTTTT
Found at i:241712 original size:22 final size:23
Alignment explanation
Indices: 241676--241729 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
241666 TAAAAAATAT
*
241676 AAAAATA-AATAAAT-ATTTTCAA
1 AAAAATATAATAAATAAATTT-AA
241698 AAAAATATAAT-AATAAATTTAA
1 AAAAATATAATAAATAAATTTAA
*
241720 AAAAGTATAA
1 AAAAATATAA
241730 ATTGTTGACA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 21 0.75
23 7 0.25
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
AAAAATATAATAAATAAATTTAA
Found at i:243120 original size:11 final size:10
Alignment explanation
Indices: 243103--243132 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
243093 AACGTCAAAC
243103 TAAAATAAAA
1 TAAAATAAAA
243113 TAAAAATAAAA
1 T-AAAATAAAA
243124 TAAAATAAA
1 TAAAATAAA
243133 TAAGAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:243135 original size:4 final size:5
Alignment explanation
Indices: 243103--243132 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
243093 AACGTCAAAC
243103 TAAAA TAAAA TAAAAA TAAAA TAAAA TAAA
1 TAAAA TAAAA T-AAAA TAAAA TAAAA TAAA
243133 TAAGAGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:244656 original size:16 final size:17
Alignment explanation
Indices: 244623--244656 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
244613 CCTTATACTA
*
244623 TTTAAGATGAAACTAAT
1 TTTAAGATGAAACAAAT
244640 TTTAAGATGAAA-AAAT
1 TTTAAGATGAAACAAAT
244656 T
1 T
244657 GATAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.50, C:0.03, G:0.12, T:0.35
Consensus pattern (17 bp):
TTTAAGATGAAACAAAT
Found at i:247666 original size:18 final size:17
Alignment explanation
Indices: 247615--247676 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 17
247605 ATAATTAAAT
*
247615 ATTAAATCTAAGTAATAAA
1 ATTAAAT-TATGTAAT-AA
*
247634 ATT-AATTATGGAATATA
1 ATTAAATTATGTAATA-A
*
247651 ATTAAATTATTTAATAA
1 ATTAAATTATGTAATAA
247668 ATATAAATT
1 AT-TAAATT
247677 TTAAATTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 1 0.03
17 13 0.36
18 19 0.53
19 3 0.08
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (17 bp):
ATTAAATTATGTAATAA
Found at i:263494 original size:399 final size:396
Alignment explanation
Indices: 262189--263632 Score: 1644
Period size: 405 Copynumber: 3.6 Consensus size: 396
262179 CCTGACGAAT
* * * * * *
262189 GTGGCACCTCAGCTAGATTAGATTCGGGGCCTTGTTGAAAAGCACTCTGTATCTCCTCCAGAGAT
1 GTGGCAGCTCAGCTAGATTAGGTTCTGGGCCTTGTTG-AAAGCATTATGTATATCCTCCAGAGAT
* * * * * * *
262254 TTTGCCTCAACAACTGGTAAATCCGAATTGGTATCTGCATCACCCTGCTGATTCTCAATCATGCT
65 CTTGCCTCAACAACAGGTAAATCCGAAGTGGTATCTGCATGATCCGGCTGATTCTCAATCATACT
* *
262319 TGGAAGAATTACTTCCTCAACATCAACTCCTTCATGAAGTTGCTTAAAAGCCAAATCAATGTCTT
130 TGGAAGAATTACTTCCTCAACATCCACTCCTTCATGAAGTTGCTTAAAAGCCAAATCAATATCTT
* * * ** * *
262384 CCAGTGACCTTGCTTCAAGAACAGGCAGCTCTGCATTGGTCTCCATCTTCATTTCCTCTATTTCT
195 CAACTGATCTTGCTTCAAGAACAGGCAGCTCCACATTGGTCTCCATCTTCAATTCTTCTATTTCT
* * * * * * * *
262449 TCATGGTCATTCTTTGGTTCACCGGCAGCATTCTGACTATTTTCTTGAATGCCAGAGACGGCATG
260 TCAT--TCATT-TTTGGTTCACCAGCAGCATTCTCACAATCTTCTTCAATACCAGAGACAGCATT
** * * * *
262514 ACCAACTTCAATCTCTTTATTAGAAACCACATCATGCTGCTCCATTTTTGATGATCCATTTCTCA
322 ACCAACTTCAATCTC-TTAGAAGAAACCACATCATGCTGCTCTACTTCTGATGATCCATTCCTCA
*
262579 AGTCTGCAGAAA
386 AGTCTG-TGAAA
* * * * *
262591 GCGGCAGCTCGGCTGGATTAGGTTCTGGACCTTTTTGGAAAGCATTATGTATATCCTCCAGAGAT
1 GTGGCAGCTCAGCTAGATTAGGTTCTGGGCCTTGTT-GAAAGCATTATGTATATCCTCCAGAGAT
** ** * * * *
262656 CTTGCCTCAACAACAGGTACCTTTGAAGTGGAATCTTCATGATCCAGCTGATTCTCAATCATGCT
65 CTTGCCTCAACAACAGGTAAATCCGAAGTGGTATCTGCATGATCCGGCTGATTCTCAATCATACT
* * * *
262721 TGTAAGAACTACTTCCTCAACGTCTACAT-CTTCATGAAGTTGCTTAAAAGCCAAATCAATATCT
130 TGGAAGAATTACTTCCTCAACATCCAC-TCCTTCATGAAGTTGCTTAAAAGCCAAATCAATATCT
* * * *
262785 TCAACTGATCTTGCATCCAGAACAGGCAGCTCCGCATTGGTCTCCATCATCAATTCTTCTATTTC
194 TCAACTGATCTTGCTTCAAGAACAGGCAGCTCCACATTGGTCTCCATCTTCAATTCTTCTATTTC
* *
262850 TTCATATTCTTTTTTTGGTTCACCAGCAGCAACATTCTCA-ATATGTTCTTCAA-AGCCAGAGAC
259 TTC--ATTC-ATTTTTGGTTCACCAGCAG---CATTCTCACA-ATCTTCTTCAATA-CCAGAGAC
* * * *** *
262913 TGCTTTGCCAACTTCAATCTCATTAGAAGAAACCACATTGCGCTGCTCTACTTCTGATGACCCAT
316 AGCATTACCAACTTCAATCTC-TTAGAAGAAACCACATCATGCTGCTCTACTTCTGATGATCCAT
* * *
262978 GCCTCAAGTCTACTGAAT
380 TCCTCAAGTCT-GTGAAA
* * ** * * *
262996 GTGGCAGCTCAG-TTGTATTAGGTTCTAGTTCTTTTATGAAAGCATCATGTATATCATCCAGAGA
1 GTGGCAGCTCAGCTAG-ATTAGGTTCTGGGCCTTGT-TGAAAGCATTATGTATATCCTCCAGAGA
* * * *
263060 TCTTGCCTCGACAACAGG-AAATTCTGAAGTGGTATCTGTATGATCTGGCTGATTCTCAATCATA
64 TCTTGCCTCAACAACAGGTAAA-TCCGAAGTGGTATCTGCATGATCCGGCTGATTCTCAATCATA
263124 CTTGGAAGAATTACTTCCTCAACATCCACTCCTTCATGAAGTTGCTTAAAAGCCAAATCAATATC
128 CTTGGAAGAATTACTTCCTCAACATCCACTCCTTCATGAAGTTGCTTAAAAGCCAAATCAATATC
* * * * * *
263189 TTCAACCGATCTTGCTTCAAGAACCGGTAGCTCCACATTGGTCTCCGTCTTTAGTTCTTCTATTT
193 TTCAACTGATCTTGCTTCAAGAACAGGCAGCTCCACATTGGTCTCCATCTTCAATTCTTCTATTT
* *
263254 CTTC-TTCATTTTTGGGTTCACCAGCAGCATTATCACAACCTTCTTCAATACCAGAGACAGCATT
258 CTTCATTCATTTTT-GGTTCACCAGCAGCATTCTCACAATCTTCTTCAATACCAGAGACAGCATT
* ** * *
263318 ACTAACTTTGATCTCTTCAGAAGAAACAACAACATGCTGCTCTACTTCTGATGATCCATTCCTCA
322 ACCAACTTCAATCTCTT-AGAAGAAACCACATCATGCTGCTCTACTTCTGATGATCCATTCCTCA
*
263383 AGTCTGTGGAAC
386 AGTCTGT-GAAA
* *
263395 GTGGCAGCTGAGCTAGATTAGGTTCTGGGTCTTGTTGCAAAGCATTATGTATATCCTCCAGAGAT
1 GTGGCAGCTCAGCTAGATTAGGTTCTGGGCCTTGTTG-AAAGCATTATGTATATCCTCCAGAGAT
* *
263460 CTCGCCTCGACAACAGGTAAATCCG-AGTTGGTATCTGCATGATCCGGCTGATTC-CTAATCATA
65 CTTGCCTCAACAACAGGTAAATCCGAAG-TGGTATCTGCATGATCCGGCTGATTCTC-AATCATA
* * *
263523 CTTGGAAGAATTACTTCCTCAACATCCGCTCCTTCATGAAGTTGCTTAAATGCCAAATCAATGTC
128 CTTGGAAGAATTACTTCCTCAACATCCACTCCTTCATGAAGTTGCTTAAAAGCCAAATCAATATC
* * *
263588 TTCTACTGATCTTGCTTCAAGAACAGGCAGTTCCACACTGGTCTC
193 TTCAACTGATCTTGCTTCAAGAACAGGCAGCTCCACATTGGTCTC
263633 AGTCTCCCTA
Statistics
Matches: 883, Mismatches: 134, Indels: 53
0.83 0.13 0.05
Matches are distributed among these distances:
398 8 0.01
399 290 0.33
400 7 0.01
401 5 0.01
402 254 0.29
403 4 0.00
404 6 0.01
405 308 0.35
406 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (396 bp):
GTGGCAGCTCAGCTAGATTAGGTTCTGGGCCTTGTTGAAAGCATTATGTATATCCTCCAGAGATC
TTGCCTCAACAACAGGTAAATCCGAAGTGGTATCTGCATGATCCGGCTGATTCTCAATCATACTT
GGAAGAATTACTTCCTCAACATCCACTCCTTCATGAAGTTGCTTAAAAGCCAAATCAATATCTTC
AACTGATCTTGCTTCAAGAACAGGCAGCTCCACATTGGTCTCCATCTTCAATTCTTCTATTTCTT
CATTCATTTTTGGTTCACCAGCAGCATTCTCACAATCTTCTTCAATACCAGAGACAGCATTACCA
ACTTCAATCTCTTAGAAGAAACCACATCATGCTGCTCTACTTCTGATGATCCATTCCTCAAGTCT
GTGAAA
Found at i:268676 original size:96 final size:97
Alignment explanation
Indices: 268576--268768 Score: 370
Period size: 96 Copynumber: 2.0 Consensus size: 97
268566 AGATTTTGTA
268576 AAAACGATTATTTTTTATAAAGTATATAATATAAAATATATAAATATTTTTATTTAATA-TTTTT
1 AAAACGATTATTTTTTATAAAGTATATAATATAAAATATATAAATATTTTTATTTAATATTTTTT
268640 AAAAAGAATTAATGTAATTAAAACATAACAAT
66 AAAAAGAATTAATGTAATTAAAACATAACAAT
268672 AAAACGATTATTTTTTATAAAGTATATAATATAAAATATATAAATATTTTTATTTAATATTTTTT
1 AAAACGATTATTTTTTATAAAGTATATAATATAAAATATATAAATATTTTTATTTAATATTTTTT
*
268737 AAAAAGAATTAATGTAATTAAAACATTACAAT
66 AAAAAGAATTAATGTAATTAAAACATAACAAT
268769 TTTTTATGTA
Statistics
Matches: 95, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
96 59 0.62
97 36 0.38
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.42
Consensus pattern (97 bp):
AAAACGATTATTTTTTATAAAGTATATAATATAAAATATATAAATATTTTTATTTAATATTTTTT
AAAAAGAATTAATGTAATTAAAACATAACAAT
Found at i:269083 original size:30 final size:30
Alignment explanation
Indices: 269049--269136 Score: 140
Period size: 30 Copynumber: 2.9 Consensus size: 30
269039 AATCATGATC
*
269049 AATAATTCTTTTCTTAAAATATGTGTTGTG
1 AATAATTCTTTTCTTAAAATATGTGTTATG
**
269079 AATAATTCTTTTCTTAACCTATGTGTTATG
1 AATAATTCTTTTCTTAAAATATGTGTTATG
269109 AATAATTCTTTTCTTAAAAATATGTGTT
1 AATAATTCTTTTCTT-AAAATATGTGTT
269137 TAAATTTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
30 42 0.81
31 10 0.19
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (30 bp):
AATAATTCTTTTCTTAAAATATGTGTTATG
Found at i:269309 original size:3 final size:3
Alignment explanation
Indices: 269301--269334 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
269291 GCAAGCTTAC
269301 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
269335 GTAACATCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:274500 original size:2 final size:2
Alignment explanation
Indices: 274493--274538 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
274483 AAATAAATAA
274493 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
274535 AT AT
1 AT AT
274539 TATTTAAATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:275715 original size:4 final size:4
Alignment explanation
Indices: 275708--275748 Score: 57
Period size: 4 Copynumber: 10.0 Consensus size: 4
275698 TATAAAATAA
275708 TATT TATTT TATT T-TAT TATT TATT TATT TATT TATT TATT
1 TATT TA-TT TATT TAT-T TATT TATT TATT TATT TATT TATT
275749 ATTGTATGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 1 0.03
4 28 0.82
5 5 0.15
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:275731 original size:71 final size:74
Alignment explanation
Indices: 275651--275845 Score: 253
Period size: 75 Copynumber: 2.7 Consensus size: 74
275641 ATTTTTCTTA
*
275651 TTATT-TTTATTTATTTATTTTTTATT-TT-T-TGAATATGAATAAATAAATATAAAATAATATT
1 TTATTATTTATTTATTTATTTTTTATTATTGTATGAATATAAATAAATAAATATAAAATAATATT
*
275712 TATTTTATT
66 AATTTTATT
*
275721 TTATTATTTATTTATTTATTTATTTATTATTGTATGAATATAAATAAATAAATGTAAAATAATAT
1 TTATTATTTATTTATTTATTT-TTTATTATTGTATGAATATAAATAAATAAATATAAAATAATAT
*
275786 TAATTTTGTT
65 TAATTTTATT
* * *
275796 TTATTATTTATTTA-TTATTTTATGAATATAG-AT-AA-ATAAATAAATAAATA
1 TTATTATTTATTTATTTATTTT-TTATTATTGTATGAATATAAATAAATAAATA
275846 ACAAACCCAA
Statistics
Matches: 111, Mismatches: 8, Indels: 11
0.85 0.06 0.08
Matches are distributed among these distances:
70 5 0.05
71 29 0.26
72 8 0.07
73 5 0.05
74 13 0.12
75 51 0.46
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (74 bp):
TTATTATTTATTTATTTATTTTTTATTATTGTATGAATATAAATAAATAAATATAAAATAATATT
AATTTTATT
Found at i:280883 original size:107 final size:107
Alignment explanation
Indices: 280697--280910 Score: 419
Period size: 107 Copynumber: 2.0 Consensus size: 107
280687 CTTAATATAC
*
280697 CCTATTTTTGTTTTTGTTGCTATTGAACCTTTGAAGGCACAAGGATACTAGACAGCTACATGGAT
1 CCTATTTTTGTCTTTGTTGCTATTGAACCTTTGAAGGCACAAGGATACTAGACAGCTACATGGAT
280762 GGTTTCACTAGTATGCTTAAAGCTTCTACATGACAAGTGATT
66 GGTTTCACTAGTATGCTTAAAGCTTCTACATGACAAGTGATT
280804 CCTATTTTTGTCTTTGTTGCTATTGAACCTTTGAAGGCACAAGGATACTAGACAGCTACATGGAT
1 CCTATTTTTGTCTTTGTTGCTATTGAACCTTTGAAGGCACAAGGATACTAGACAGCTACATGGAT
280869 GGTTTCACTAGTATGCTTAAAGCTTCTACATGACAAGTGATT
66 GGTTTCACTAGTATGCTTAAAGCTTCTACATGACAAGTGATT
280911 ATTAGTTCAT
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 106 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (107 bp):
CCTATTTTTGTCTTTGTTGCTATTGAACCTTTGAAGGCACAAGGATACTAGACAGCTACATGGAT
GGTTTCACTAGTATGCTTAAAGCTTCTACATGACAAGTGATT
Found at i:288185 original size:20 final size:20
Alignment explanation
Indices: 288155--288200 Score: 83
Period size: 20 Copynumber: 2.2 Consensus size: 20
288145 TATGTTGAAG
288155 AATATAGCAGAATAATAAATT
1 AATA-AGCAGAATAATAAATT
288176 AATAAGCAGAATAATAAATT
1 AATAAGCAGAATAATAAATT
288196 AATAA
1 AATAA
288201 ATATTTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.61, C:0.04, G:0.09, T:0.26
Consensus pattern (20 bp):
AATAAGCAGAATAATAAATT
Found at i:297037 original size:17 final size:18
Alignment explanation
Indices: 297011--297044 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
297001 CCCTGTTACA
*
297011 GTTATTAAGATA-AAATG
1 GTTATGAAGATAGAAATG
297028 GTTATGAAGATAGAAAT
1 GTTATGAAGATAGAAAT
297045 CCTTTGCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (18 bp):
GTTATGAAGATAGAAATG
Found at i:312991 original size:5 final size:5
Alignment explanation
Indices: 312981--313010 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
312971 GTATTCATGA
312981 GTTAG GTTAG GTTAG GTTAG GTTAG GTTAG
1 GTTAG GTTAG GTTAG GTTAG GTTAG GTTAG
313011 ATTTAGGAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (5 bp):
GTTAG
Found at i:314535 original size:28 final size:31
Alignment explanation
Indices: 314482--314551 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 31
314472 TACCACTTAT
*
314482 AATATTTTAATAGTTTAAAATGTAA-TTAA-
1 AATATTTTAATAATTTAAAATGTAATTTAAG
314511 AATATTTTAA-AATTTAAAGAT-TAATTTAAG
1 AATATTTTAATAATTTAAA-ATGTAATTTAAG
314541 AATA-TTTAATA
1 AATATTTTAATA
314552 CAATCAATCC
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
28 10 0.28
29 21 0.58
30 5 0.14
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (31 bp):
AATATTTTAATAATTTAAAATGTAATTTAAG
Found at i:337081 original size:2 final size:2
Alignment explanation
Indices: 337074--337102 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
337064 AAAACTAACA
337074 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
337103 GGGGTAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.