Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011581.1 Kokia drynarioides strain JFW-HI SEQ_126570, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7313
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33


Found at i:389 original size:21 final size:18

Alignment explanation


    Indices: 352--393  Score: 57
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        342 TTAAAATATG

                              
        352 AAAAAAAAATATTTTTTT
          1 AAAAAAAAATATTTTTTT

                                 
        370 AAAAAAAAATGATGTATTTTT
          1 AAAAAAAAAT-AT-T-TTTTT

               
        391 AAA
          1 AAA

        394 GGATAAGATT


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  18   10  0.48
  19    2  0.10
  20    1  0.05
  21    8  0.38

ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38


Consensus pattern (18 bp):   
AAAAAAAAATATTTTTTT
Done.