genome.fa.s11582.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011582.1 Kokia drynarioides strain JFW-HI SEQ_126571, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189587

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--229	76	3.0	76	86	8	302	56	3	7	31	1.45
299--343	22	2.0	22	86	4	63	17	6	22	53	1.67
1039--1735	208	3.3	208	86	3	932	23	21	16	39	1.92
1663--1733	37	1.9	37	94	0	124	28	21	14	36	1.92
1340--2103	368	2.1	368	89	1	1156	23	21	16	38	1.93
1548--1880	160	2.1	160	92	1	551	23	21	16	38	1.93
1775--1940	84	2.0	84	84	4	219	22	22	17	37	1.94
1984--2148	85	1.9	85	83	0	213	24	23	15	36	1.93
1709--2649	209	4.5	209	87	3	1247	23	21	17	38	1.93
2392--2567	48	3.9	48	70	18	160	22	20	18	39	1.93
2401--2568	85	2.0	85	89	2	257	22	20	19	38	1.94
7772--7808	15	2.5	15	84	16	51	40	5	18	35	1.74
11319--11363	20	2.2	20	81	11	56	73	4	0	22	1.01
11536--11648	30	3.8	30	83	3	95	32	6	24	36	1.81
11567--11687	30	4.1	29	86	6	149	36	2	21	39	1.67
11567--11687	58	2.1	59	83	10	151	36	2	21	39	1.67
12615--12687	30	2.4	30	88	4	103	61	1	2	34	1.19
12743--12775	13	2.5	13	100	0	66	54	0	0	45	0.99
18022--18051	11	2.7	11	89	0	51	33	0	3	63	1.11
19607--19644	20	1.9	20	94	0	67	13	15	23	47	1.81
22606--22652	24	2.0	22	84	8	58	76	0	4	19	0.95
22603--22659	22	2.7	21	75	17	55	77	0	5	17	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28224--28372	75	2.0	75	100	0	298	38	16	14	29	1.89
30613--30779	19	8.8	19	84	1	156	28	34	15	22	1.94
46125--46162	8	4.6	8	84	12	51	86	0	10	2	0.66
46124--46160	16	2.4	16	90	4	58	83	0	13	2	0.74
50740--50823	29	2.9	28	75	1	78	55	22	2	19	1.54
62952--63068	38	3.1	38	76	3	112	38	10	17	33	1.84
70531--70585	24	2.2	24	84	9	67	54	1	1	41	1.21
77231--77331	37	2.7	37	87	0	148	15	18	26	38	1.91
80807--80850	17	2.6	17	80	19	56	6	18	0	75	1.02
96900--96939	20	2.0	21	90	5	64	30	0	17	52	1.45
109788--109933	39	3.8	39	81	3	179	26	17	18	38	1.92
117272--117337	29	2.2	28	80	15	71	37	0	4	57	1.19
120910--120966	24	2.4	24	84	0	87	52	7	12	28	1.64
123648--123699	21	2.5	21	87	0	77	44	26	17	11	1.83
123551--123677	37	3.4	37	80	0	128	37	31	18	12	1.88
123608--123721	58	1.9	59	87	1	167	42	27	18	12	1.86
125259--125318	24	2.5	24	80	0	75	46	8	15	30	1.74
135821--135887	19	3.5	19	81	2	71	47	0	25	26	1.52
145499--145604	39	2.7	39	83	0	131	33	12	26	28	1.92
146756--146796	20	2.0	21	85	4	57	46	2	2	48	1.28
147584--147625	13	3.0	14	79	10	50	64	4	0	30	1.14
147798--147852	24	2.3	25	78	12	62	40	1	3	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147827--147902	31	2.5	29	79	14	73	44	2	3	48	1.35
154591--154624	17	2.0	17	94	0	59	41	26	0	32	1.56
156127--156160	16	2.1	16	88	0	50	44	0	2	52	1.16
166201--166310	28	3.9	28	97	0	193	32	10	12	43	1.78
167079--167148	36	1.9	37	88	2	106	28	22	11	37	1.89
168374--168436	32	2.0	32	96	0	117	25	14	12	47	1.79
168510--168662	56	2.7	56	86	2	209	47	13	7	32	1.69
172475--172525	17	3.0	16	75	18	50	43	5	0	50	1.26
175380--175422	19	2.3	19	84	8	52	55	4	2	37	1.33
175829--175884	29	1.9	29	85	7	78	37	3	5	53	1.41
175833--175894	29	2.1	30	82	8	74	40	3	8	48	1.49
176966--176996	13	2.4	13	100	0	62	45	0	12	41	1.42
177559--177675	61	1.9	61	94	0	207	41	1	5	50	1.37
186639--186680	17	2.5	17	100	0	84	28	19	16	35	1.93

Tables:   1

The End!