genome.fa.s11583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011583.1 Kokia drynarioides strain JFW-HI SEQ_126572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133090

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477--888	29	14.1	29	76	10	322	33	29	5	32	1.79
474--855	59	6.5	59	83	6	422	32	29	4	32	1.79
476--856	118	3.2	118	85	4	477	32	29	4	33	1.78
513--901	59	6.6	58	81	4	227	33	28	4	32	1.79
2910--2953	22	2.0	22	82	8	54	6	4	11	77	1.11
7963--8014	18	2.8	19	77	8	63	38	0	0	61	0.96
11311--11416	53	2.0	53	98	0	203	18	15	12	53	1.72
22711--22775	29	2.3	28	76	12	71	35	13	3	47	1.59
22711--22778	30	2.4	28	80	11	77	35	13	2	48	1.57
22884--22959	30	2.5	30	82	2	89	32	10	10	46	1.73
23010--23058	10	5.1	10	78	9	57	24	0	8	67	1.18
25859--25962	23	4.4	23	82	7	129	10	23	22	44	1.83
25860--26009	71	2.1	69	86	7	205	12	24	20	43	1.86
25893--26008	23	5.1	22	73	15	85	13	22	20	43	1.87
32140--32173	15	2.4	14	85	9	50	44	0	11	44	1.40
32928--33031	23	4.4	23	76	10	95	12	23	20	44	1.85
36582--36644	9	6.7	9	75	15	56	82	0	12	4	0.82
36581--36650	24	2.9	23	78	16	79	81	0	12	5	0.86
36583--36650	32	2.2	31	86	7	93	82	0	13	4	0.82
36954--37155	112	1.8	112	89	4	318	28	20	10	40	1.86
37594--37727	50	2.7	50	84	5	164	36	17	21	23	1.95
37784--38229	79	5.6	79	84	4	488	32	25	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37798--38229	237	1.8	237	83	4	584	32	25	16	25	1.96
39911--40094	30	6.2	29	73	10	106	38	18	4	39	1.71
40041--40116	30	2.5	30	82	4	82	38	21	5	35	1.76
49249--49304	25	2.3	25	84	9	71	41	0	12	46	1.42
51009--51039	15	2.1	15	93	0	53	32	51	0	16	1.44
51929--51956	2	14.0	2	100	0	56	50	0	0	50	1.00
52424--52525	53	1.9	53	95	0	186	39	8	16	35	1.80
55955--56069	58	2.0	58	91	0	185	48	20	0	30	1.50
69011--69044	17	2.0	17	94	0	59	35	8	23	32	1.86
88072--88111	18	2.2	18	90	0	62	32	27	25	15	1.95
96803--96857	22	2.6	21	83	16	85	49	9	20	21	1.76
101645--101808	81	2.0	81	90	0	256	40	9	18	31	1.82
101726--102618	158	5.7	158	88	2	1336	39	7	15	37	1.75
105006--105055	21	2.4	21	80	9	59	32	26	14	28	1.94
106746--106774	10	2.9	10	100	0	58	58	10	0	31	1.31
108472--108608	30	4.5	31	70	18	90	29	4	6	59	1.42
108504--108619	61	1.9	61	82	3	144	25	4	8	61	1.44
108534--108612	37	2.1	37	81	11	90	27	3	5	63	1.33
118694--118824	60	2.2	57	86	5	181	38	9	17	35	1.82
120483--120515	5	6.4	5	96	3	57	0	21	0	78	0.75
120483--120520	15	2.4	16	86	8	60	0	21	0	78	0.74
123685--124111	50	8.5	51	69	13	233	41	20	24	13	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123685--124061	101	3.7	101	85	4	453	41	20	24	13	1.89
123929--124132	50	4.1	49	69	12	119	43	19	23	13	1.86
123828--124141	150	2.1	150	88	2	461	41	19	24	14	1.88
131046--131073	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!