Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011584.1 Kokia drynarioides strain JFW-HI SEQ_126574, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13211
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Found at i:88 original size:16 final size:16
Alignment explanation
Indices: 67--98 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
57 CAAAACATTG
67 CCTCCAAAAATATCTT
1 CCTCCAAAAATATCTT
83 CCTCCAAAAATATCTT
1 CCTCCAAAAATATCTT
99 TCACCAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (16 bp):
CCTCCAAAAATATCTT
Found at i:105 original size:16 final size:16
Alignment explanation
Indices: 70--106 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
60 AACATTGCCT
*
70 CCAAAAATATCTTCCT
1 CCAAAAATATCTTCCA
*
86 CCAAAAATATCTTTCA
1 CCAAAAATATCTTCCA
102 CCAAA
1 CCAAA
107 TTACTCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (16 bp):
CCAAAAATATCTTCCA
Found at i:1873 original size:23 final size:23
Alignment explanation
Indices: 1842--1949 Score: 189
Period size: 23 Copynumber: 4.7 Consensus size: 23
1832 ATTCTAGTGC
*
1842 GCTTGCTGTTTCGCACTTTGTGT
1 GCTTACTGTTTCGCACTTTGTGT
1865 GCTTACTGTTTCGCACTTTGTGT
1 GCTTACTGTTTCGCACTTTGTGT
*
1888 GCTTACTGTTTCGCACTTCGTGT
1 GCTTACTGTTTCGCACTTTGTGT
1911 GCTTACTGTTTCGCACTTTGTGT
1 GCTTACTGTTTCGCACTTTGTGT
*
1934 GCTTACTGTTTTGCAC
1 GCTTACTGTTTCGCAC
1950 CTCGTATTCC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 81 1.00
ACGTcount: A:0.08, C:0.23, G:0.22, T:0.46
Consensus pattern (23 bp):
GCTTACTGTTTCGCACTTTGTGT
Found at i:1964 original size:46 final size:46
Alignment explanation
Indices: 1842--1964 Score: 156
Period size: 46 Copynumber: 2.7 Consensus size: 46
1832 ATTCTAGTGC
* * * * *
1842 GCTTGCTGTTTCGCACTTTGTGTGCTTACTGTTTCGCACTTTGTGT
1 GCTTACTGTTTCGCACCTCGTATGCCTACTGTTTCGCACTTTGTGT
* * *
1888 GCTTACTGTTTCGCACTTCGTGTGCTTACTGTTTCGCACTTTGTGT
1 GCTTACTGTTTCGCACCTCGTATGCCTACTGTTTCGCACTTTGTGT
* *
1934 GCTTACTGTTTTGCACCTCGTATTCCTACTG
1 GCTTACTGTTTCGCACCTCGTATGCCTACTG
1965 ATTTGTGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.46
Consensus pattern (46 bp):
GCTTACTGTTTCGCACCTCGTATGCCTACTGTTTCGCACTTTGTGT
Found at i:1984 original size:23 final size:22
Alignment explanation
Indices: 1958--2015 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
1948 ACCTCGTATT
*
1958 CCTACTGATTTGTGCTATGTGCG
1 CCTACTGA-TTGCGCTATGTGCG
* *
1981 CCTACTGATTGCGCTGTGTGTG
1 CCTACTGATTGCGCTATGTGCG
2003 CCTACTGGATTGC
1 CCTACT-GATTGC
2016 ACTGTGTGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 17 0.55
23 14 0.45
ACGTcount: A:0.12, C:0.24, G:0.28, T:0.36
Consensus pattern (22 bp):
CCTACTGATTGCGCTATGTGCG
Found at i:2005 original size:22 final size:22
Alignment explanation
Indices: 1958--2032 Score: 87
Period size: 23 Copynumber: 3.3 Consensus size: 22
1948 ACCTCGTATT
* * *
1958 CCTACTGATTTGTGCTATGTGCG
1 CCTACTGA-TTGCGCTGTGTGTG
1981 CCTACTGATTGCGCTGTGTGTG
1 CCTACTGATTGCGCTGTGTGTG
*
2003 CCTACTGGATTGCACTGTGTGTG
1 CCTACT-GATTGCGCTGTGTGTG
*
2026 CTTACTG
1 CCTACTG
2033 TTAAGTACTT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
22 18 0.39
23 28 0.61
ACGTcount: A:0.12, C:0.23, G:0.28, T:0.37
Consensus pattern (22 bp):
CCTACTGATTGCGCTGTGTGTG
Found at i:2866 original size:43 final size:43
Alignment explanation
Indices: 2823--6838 Score: 1556
Period size: 43 Copynumber: 94.4 Consensus size: 43
2813 CATCGAATAT
* *
2823 ACCGAAGTAAT-TATACTGGCACATACAGTGCATCATAGGATAT
1 ACCGAAG-AATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
2866 ATC-AAAACATCAATACTAGCACTCACACAGTGCCTCATCA-GATAA
1 ACCGAAGA-ATCTATACTGGCA--CACACAGTGCATCAT-AGGATAA
* *
2911 ACCGAAGCATCTATACTGGCACCCACACAGTGCATCATGGGATAA
1 ACCGAAGAATCTATACTGGCA--CACACAGTGCATCATAGGATAA
* ** * * * *
2956 ACCGAAGCATCTATACTAACACAAACAAG-GCATCATTGAATAT
1 ACCGAAGAATCTATACTGGCACACAC-AGTGCATCATAGGATAA
* * * *
2999 ACCGAAGTAA-CTATAC-GAGCACATACAATGCATCATCGGATAT
1 ACCGAAG-AATCTATACTG-GCACACACAGTGCATCATAGGATAA
* * * * *
3042 ACCGAAGCATCTATACTGGCATAAACAGTGCATCGT-CGAGTAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGA-TAA
* * * *
3085 ACCGAAGCATTTATACTGG--CACATAGTGCATCATTGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * *
3126 ATCAAAGCATCAATACTAGCACACACAGTGCAT-AAACGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATA-GGATAA
* * * * *
3169 ACCGAAGAATCAATACTGGTACACACAGTGCATCATCGAAAAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* *
3212 ATCGAA-ACATCTATACTGACACACACAGTGCATCATAGGATAA
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
3255 ACTGAAGAATCTATACTGACA-AGCAAAGTGCATCATTGGGTAA
1 ACCGAAGAATCTATACTGGCACA-CACAGTGCATCATAGGATAA
* * * * * * * *
3298 ATCAAAGCATTTATACTGGCACACATAGTGCATCGTCGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * ***
3341 ATCGAA-ACATCTACACTGACACACATAGTGCATCATTTAATAA
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
** * * * *
3384 ACTAAAGCATCTATACTAGCACACATAGTACATCATCA-GATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCAT-AGGATAA
* * * *
3427 ACTGAAGCATCTATACTAGCACACACAGTGCATCATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * *
3470 ACAGAAGCATCAATACTGACACACATAGTGCATCATCA-GATAC
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCAT-AGGATAA
* * * * * * *
3513 ACC-AAAACATCTACACTCGCACACATAGTGTATCATCGGATAC
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
** * * *
3556 ATTG-A-AA---ATACTGG--CACACAGTGTATCATTGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
** * ** * * * *
3592 ATTGAAAAATCTACCCTGACACACACAGCGCAACATTGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * *
3635 ACCGAAGCATCTATACTGGCACACAC--TGCAACATTGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * *
3676 ACCGAAGAATCTATATTGACATACACAGTGTATTATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * ** * *
3719 ATCGAAGCATCTATATTGGCACACTTAGTGCATCATTA-GACAC
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCA-TAGGATAA
* * * * * * *
3762 ATCGAA-ACTTCTATACTAGAACATACAATGCATCATCGGATAA
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
* * *** * *
3805 ACTGAAGCATCTATACTAAAACACACGGTGCATCATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
** * * * *
3848 ACTAAAGTATTTATA-TCGGCACACACAGTGCATCATTGAATAA
1 ACCGAAGAATCTATACT-GGCACACACAGTGCATCATAGGATAA
* * * *
3891 ACCGAAGGATCTATACTAGCACACACAGTGCATCATCGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * * *
3934 ACTGAAGCATTTATACTGACACATAAAGTACATCATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
** * * * * *
3977 ATTG-A-AA-C-AT-CT-----ATA-A-TGTATCATCGAATAT
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * *
4008 ACCGAAGTAA-CTATACTGGCACATACAGTGCATCATCGGATAT
1 ACCGAAG-AATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * ** *
4051 ATC-AAAACATCAATACTAACACCCACACAGTGCCTCATCA-GATAA
1 ACCGAAGA-ATCTATACTGGCA--CACACAGTGCATCAT-AGGATAA
* *
4096 ACCGAAGCATCTATACTGGCACCCACACAGTGCATCATGGGATAA
1 ACCGAAGAATCTATACTGGCA--CACACAGTGCATCATAGGATAA
* * * * * *
4141 ACCGAAGCATCTATACTGACACAAACAAG-GCATCATCGAATAT
1 ACCGAAGAATCTATACTGGCACACAC-AGTGCATCATAGGATAA
* * * * *
4184 ACCGAAGTAA-CTATACTAGCACATACAATGCATCATCGGATAT
1 ACCGAAG-AATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
4227 ACCGAAGCATCTATACTGGCATAAACAGTGCATCGT-CGAGTAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGA-TAA
** * **
4270 ATAGAAGCATCTATACTGG--CACACAGTGCATCATTTGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * *
4311 ACCGAATAATCAATACTGGTACACATAGTACATCATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
4354 ACAGAAGCATCAATACT-G-ACACACAGTGTATCATCA-GATAC
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCAT-AGGATAA
* * * ** * *
4395 ACCGAA-ACATTTACACTGGCACACATAGTATATCATCGGATAC
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
** * * *
4438 ATTG-A-AA---ATACTGGCACACACAGTGTATCATTGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * ** * * * *
4476 ATCGAAAAATCTACCCT-GAACACACAGCGCAACATTGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * *
4518 ACCGAAGCATCTATACTGGCACACAC--TGCAACATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * ** *
4559 ACCGAAGAATCTATATTGACACACACAGTATATCATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * *
4602 ATCGAAGCATCTATATTGGCACACATAGTGTATCATTGGATAC
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * *
4645 ACCGAA-ACTTCTATACTAGAACATACAATGCATCATCGGATAA
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
* * ** * *
4688 ACTGAAGCATCTATACTGAAACACACAGTGCAGCATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
** * * * *
4731 ACTAAAGTATCTATATTGGCACACACAGTGCATAATTA-AATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCA-TAGGATAA
* * * *
4774 ACCGAAGCATCTATACTAGCACACACAGTGCATCATCGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * * * *
4817 ACTGAAGCATTTATACTGACACATAAAGTACATCATCGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
** *
4860 ATTGAA-ACATCTATACTGG--CACACAGTGCATCATTGGATAA
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
* * ** * * *
4901 ACTGAAGCATCTATACTGAAACACATAGTGCATTAT-CGA-AA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
4942 ACACTAAAACATCTATACTGG--CACACAGTGCATCATCGAATAC
1 AC-CGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
4985 A-CTAAAACATCTATACTGGCACATACAGTGTATCATCA-AATAA
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCAT-AGGATAA
* * * * *
5028 ACCGAAGCATCTATACT-G-ACACATAGTACATCATTGGGTAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* ** * ** * ** *
5069 ATCGAAGCGTCTACACTGGCACTTACAATGCATCA-CCGAGTAG
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGA-TAA
** * * * * * *
5112 ACAAAAGCATTTATACTGG-AGCACATAGTACATCATCGAATAA
1 ACCGAAGAATCTATACTGGCA-CACACAGTGCATCATAGGATAA
* * * * *
5155 ACCGAAGCATTTATATTGG--CACACAGTGCATCATCGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * * * *
5196 ATCGAAGCATTTATACTTGCACACATAGCGCACCATCGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * ** **
5239 ATCGAAGCATCTATACAAGCACACACAGTGCATCATCCGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * *
5282 ACC-AGAGAATCTATACTGACACACACACAGTGCATCATAAGATAG
1 ACCGA-AGAATCTATACTG--GCACACACAGTGCATCATAGGATAA
* * * ** ** * *
5327 ACTGAAGCATCCATACTAACATGCTA-AGTGCATCATCAAG-TTA
1 ACCGAAGAATCTATACTGGCACAC-ACAGTGCATCAT-AGGATAA
* * * * * *
5370 ATCGAAGCATCTATATTGG--TACACAGTGCATCATCGGGTAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * **
5411 ACCCAAGCATCTGTACTGACACACACAGTGCATCATCTGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * ** * * *
5454 GCTGAAGTATTTATACAAGCACACCCAATACATCATTA-GATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCA-TAGGATAA
* ** * * * *
5497 ACTGAAGCTTCTACACTGACACACATAGTGCATTATCA-GATACA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCAT-AGGATA-A
* * * * * * *
5541 A---AAAAATCTACACTAGCACACATAGTTCATCATCGGATAC
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * *
5581 ACC-AA-AA---ATACTTG--CACATA-TACATGATCGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
** * * * * * * *
5616 ATTGAAGCATCTACATTGACACACACATTGCATTATTGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
5659 ACCGAAGCATCTATGCT-G-ACATACAGAGCATCATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * *
5700 ACCAAAGAATCTATACTGGCACACATAGTGCATCATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * * * * * *
5743 ATCGAAGCATCTATACTAGTATATATAGTGTATCATCGAATAC
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* *
5786 A-CGAAAACATCTATACT-G-ACACACAGTGCATCATTGGATAA
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
5827 ACTGAAGCATCTATACTGGTACACACAGTGAATCATCA-AATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCAT-AGGATAA
* * * *
5870 AGCGAAGTATCTATACTGGCACACA-A-TGCATCATCGGGTAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
5911 ATCGAAGCATCTATACTGGTACACACAATGCATTATCA-GATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCAT-AGGATAA
** * * * * * **
5954 ATTGAAGCATCTATATTGACACACAAAGTGCATGACCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
*** * * *
5997 AATAAAGCATCTATACTGGCACACATAGTGCATCATCGGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
** * ** * * * * * *
6040 ATTGAAGCATCTATACTAACACGCATAGTGTATCATCGAATAC
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * ** *
6083 ATC-AAAACATCTATACTGGCACACACTA-TTCATTTTCGGATAA
1 ACCGAAGA-ATCTATACTGGCACACAC-AGTGCATCATAGGATAA
* * * * * * * **
6126 ACAGAAGCATTTATACTGACATACAAAGTGCATAATAAAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * *
6169 ATCAAAGCATTTATACTGGCACACACAGTGCAACATCGTATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * *
6212 ACCAAAGTAA-CTATAATGGCACACGCAGTGCATTATCGGATAA
1 ACCGAAG-AATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * * *
6255 ATCGAAGCATTTATACTGGGACACATAGTGCATTATCGGGTAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * *
6298 ACTGAAGCATTTATACTGACACACATAGTGCATCATCGGGTAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * *
6341 ACAGAAGCATTTATACTGACACACATAGTGCATCATCGGGTAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * * * *
6384 ACAGAAGCATTTATACTGACATATACAGTGCATCTTTACG-TAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATC-ATAGGATAA
** * * * * *
6427 ACCGAAGCGTCTATACAGGCACACAAAATGCATCATCGGGTAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * ** * * * *
6470 ATCAAAGCATTTATATTGAAACAGACAATGCATCA-ATGAATAT
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATA-GGATAA
* * * * * * * *
6513 ACTGAAGAGA-CTATACCGGAACATATAGTCCATCATCGGATAT
1 ACCGAAGA-ATCTATACTGGCACACACAGTGCATCATAGGATAA
* * * * * *
6556 ACCAAAGCATTTATACTAGCATACACACAGTGCATCATCGAATAA
1 ACCGAAGAATCTATACTGGC--ACACACAGTGCATCATAGGATAA
* * * *
6601 AGCAAAGCATCTATACTGGCACCCACACAGTGCATCATCGGATAA
1 ACCGAAGAATCTATACTGGCA--CACACAGTGCATCATAGGATAA
* * * * *
6646 ATCGAAGCATCTATACTAGCACCCACATAGTGCATCATCGGATAA
1 ACCGAAGAATCTATACTGGCA--CACACAGTGCATCATAGGATAA
* * * * *
6691 ATCGAAGCATCTATACTGGCAGCCATACAGTGCATTATCGGATAA
1 ACCGAAGAATCTATACTGGCA--CACACAGTGCATCATAGGATAA
* * * * * *
6736 ACCGAAGCATCTATACTAGCACACATAATGTATCATAAGATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
** * * * *
6779 ATTGAAGTATCTATACTGGTACACACAGTGCATAATAGAATAA
1 ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
* *
6822 ACTGAAGCATCTATACT
1 ACCGAAGAATCTATACT
6839 AGTACACAGC
Statistics
Matches: 3043, Mismatches: 768, Indels: 324
0.74 0.19 0.08
Matches are distributed among these distances:
31 13 0.00
32 2 0.00
33 3 0.00
34 3 0.00
35 14 0.00
36 32 0.01
37 2 0.00
38 42 0.01
39 3 0.00
40 8 0.00
41 450 0.15
42 103 0.03
43 2002 0.66
44 32 0.01
45 328 0.11
46 6 0.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.23
Consensus pattern (43 bp):
ACCGAAGAATCTATACTGGCACACACAGTGCATCATAGGATAA
Found at i:3075 original size:86 final size:87
Alignment explanation
Indices: 2756--9022 Score: 2694
Period size: 86 Copynumber: 73.2 Consensus size: 87
2746 AGAAGTGTTA
* * * ** ** * * **
2756 CACACACAATGCATCATTGGGTAAACCGAAGCATCTATACTAACACGGATAATGTGTCATCGAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
2821 ATACCGAAGTAAT-TATACTG-G
66 AAACCGAAG-CATCTATACTGAG
* * * * * * * * *
2842 CACATACAGTGCATCATAGGATATATCAAAACATCAATACTAGCACTCACACAGTGCCTCATC-A
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCA--CACACAGTGCATCATCGA
2906 GATAAACCGAAGCATCTATACTG-G
64 -ATAAACCGAAGCATCTATACTGAG
* ** * *
2930 CACCCACACAGTGCATCATGGGATAAACCGAAGCATCTATACTAACACAAACAAG-GCATCATTG
1 CA--CACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACAC-AGTGCATCATCG
* * *
2994 AATATACCGAAGTAACTATAC-GAG
63 AATAAACCGAAGCATCTATACTGAG
* * * * * * *
3018 CACATACAATGCATCATCGGATATACCGAAGCATCTATACTGGCATAAACAGTGCATCGTCGAGT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
*
3083 AAACCGAAGCATTTATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * * * * *
3104 --CACATAGTGCATCATTGGATAAATCAAAGCATCAATACTAGCACACACAGTGCATAAACGAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
3167 AAACCGAAGAATCAATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * * * * *
3188 TACACACAGTGCATCATCGAAAAAATCGAAACATCTATACTGACACACACAGTGCATCATAGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
3253 AAACTGAAGAATCTATACTGA-
66 AAACCGAAGCATCTATACTGAG
* * * * * * * *
3274 CA-AGCAAAGTGCATCATTGGGTAAATCAAAGCATTTATACTGGCACACATAGTGCATCGTCGAA
1 CACA-CACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAA
* * *
3338 TAAATCGAAACATCTACACTGA-
65 TAAACCGAAGCATCTATACTGAG
* *** ** * * *
3360 CACACATAGTGCATCATTTAATAAACTAAAGCATCTATACTAGCACACATAGTACATCATC-AGA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGA-A
*
3424 TAAACTGAAGCATCTATACT-AG
65 TAAACCGAAGCATCTATACTGAG
* * * *
3446 CACACACAGTGCATCATCGGATAAACAGAAGCATCAATACTGACACACATAGTGCATCATC-AGA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGA-A
* * * * *
3510 TACACCAAAACATCTACACT-CG
65 TAAACCGAAGCATCTATACTGAG
* * * ** * *
3532 CACACATAGTGTATCATCGGATACATTGAA--A---ATACTGG--CACACAGTGTATCATTGAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
** ** **
3590 AAATTGAAAAATCTACCCTGA-
66 AAACCGAAGCATCTATACTGAG
* * * * * *
3611 CACACACAGCGCAACATTGGATAAACCGAAGCATCTATACTGGCACACAC--TGCAACATTGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
3674 AAACCGAAGAATCTATATTGA-
66 AAACCGAAGCATCTATACTGAG
* * * * * ** *
3695 CATACACAGTGTATTATCGGATAAATCGAAGCATCTATATTGGCACACTTAGTGCATCAT-TAGA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGA-A
* * * * *
3759 CACATCGAAACTTCTATACT-AG
65 TAAACCGAAGCATCTATACTGAG
* * * * *** * *
3781 AACATACAATGCATCATCGGATAAACTGAAGCATCTATACTAAAACACACGGTGCATCATCGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
** * *
3846 AAACTAAAGTATTTATA-TCG-G
66 AAACCGAAGCATCTATACT-GAG
* * * *
3867 CACACACAGTGCATCATTGAATAAACCGAAGGATCTATACTAGCACACACAGTGCATCATCGAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
3932 AAACTGAAGCATTTATACTGA-
66 AAACCGAAGCATCTATACTGAG
* * * ** * *
3953 CACATAAAGTACATCATCGGATAAATTGAA--A-C-AT-CT-----ATA-A-TGTATCATCGAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* * *
4006 ATACCGAAGTAACTATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * * * ** *
4027 CACATACAGTGCATCATCGGATATATCAAAACATCAATACTAACACCCACACAGTGCCTCATC-A
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCA--CACACAGTGCATCATCGA
4091 GATAAACCGAAGCATCTATACTG-G
64 -ATAAACCGAAGCATCTATACTGAG
* * *
4115 CACCCACACAGTGCATCATGGGATAAACCGAAGCATCTATACTGACACAAACAAG-GCATCATCG
1 CA--CACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACAC-AGTGCATCATCG
* * *
4179 AATATACCGAAGTAACTATACT-AG
63 AATAAACCGAAGCATCTATACTGAG
* * * * * * *
4203 CACATACAATGCATCATCGGATATACCGAAGCATCTATACTGGCATAAACAGTGCATCGTCGAGT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
**
4268 AAATAGAAGCATCTATACTG-G
66 AAACCGAAGCATCTATACTGAG
** ** * * * * *
4289 --CACACAGTGCATCATTTGATAAACCGAATAATCAATACTGGTACACATAGTACATCATCGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
4352 AAACAGAAGCATCAATACT--G
66 AAACCGAAGCATCTATACTGAG
* * * * * * * ** *
4372 -ACACACAGTGTATCATCAGATACACCGAAACATTTACACTGGCACACATAGTATATCATCGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* **
4436 ACATTGAA--A---ATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * ** ** * * * * *
4452 CACACACAGTGTATCATTGAATAAATCGAAAAATCTACCCT-GAACACACAGCGCAACATTGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
4516 AAACCGAAGCATCTATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * ** *
4537 CACACAC--TGCAACATCGGATAAACCGAAGAATCTATATTGACACACACAGTATATCATCGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
4600 AAATCGAAGCATCTATATTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * * * * * * * *
4621 CACACATAGTGTATCATTGGATACACCGAAACTTCTATACTAGAACATACAATGCATCATCGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
*
4686 AAACTGAAGCATCTATACTGA-
66 AAACCGAAGCATCTATACTGAG
* * ** * * * **
4707 AACACACAGTGCAGCATCGGATAAACTAAAGTATCTATATTGGCACACACAGTGCATAATTAAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
4772 AAACCGAAGCATCTATACT-AG
66 AAACCGAAGCATCTATACTGAG
* * * * * * *
4793 CACACACAGTGCATCATCGAATAAACTGAAGCATTTATACTGACACATAAAGTACATCATCGAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
** *
4858 AAATTGAAACATCTATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * ** * *
4879 --CACACAGTGCATCATTGGATAAACTGAAGCATCTATACTGAAACACATAGTGCATTATCGAA-
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
** *
4941 AACACTAAAACATCTATACTG-G
66 AA-ACCGAAGCATCTATACTGAG
* * ** * * * *
4963 --CACACAGTGCATCATCGAATACACTAAAACATCTATACTGGCACATACAGTGTATCATCAAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
5026 AAACCGAAGCATCTATACT--G
66 AAACCGAAGCATCTATACTGAG
* * * * * * * ** * * *
5046 -ACACATAGTACATCATTGGGTAAATCGAAGCGTCTACACTGGCACTTACAATGCATCACCGAGT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* ** *
5110 AGACAAAAGCATTTATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * *
5131 -AGCACATAGTACATCATCGAATAAACCGAAGCATTTATATTGG--CACACAGTGCATCATCGAA
1 CA-CACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAA
* * *
5193 TAAATCGAAGCATTTATACT-TG
65 TAAACCGAAGCATCTATACTGAG
* * * * * **
5215 CACACATAGCGCACCATCGAATAAATCGAAGCATCTATACAAGCACACACAGTGCATCATCCG-A
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCAT-CGAA
* *
5279 TAAACC-AGAGAATCTATACTGACA
65 TAAACCGA-AGCATCTATACTGA-G
** * * * ** **
5303 CACACACAGTGCATCATAAGATAGACTGAAGCATCCATACTAACATGCTA-AGTGCATCATC-AA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACAC-ACAGTGCATCATCGAA
* * *
5366 GTTAATCGAAGCATCTATATTG-G
65 -TAAACCGAAGCATCTATACTGAG
* * * * *
5389 --TACACAGTGCATCATCGGGTAAACCCAAGCATCTGTACTGACACACACAGTGCATCATCTG-A
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATC-GAA
* * * * *
5451 TAAGCTGAAGTATTTATAC-AAG
65 TAAACCGAAGCATCTATACTGAG
* * * ** * * * * * *
5473 CACACCCAATACATCATTAGATAAACTGAAGCTTCTACACTGACACACATAGTGCATTATC-AGA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGA-A
** *
5537 TACAA---AAAAATCTACACT-AG
65 TA-AACCGAAGCATCTATACTGAG
* * * * * * * *
5557 CACACATAGTTCATCATCGGATACACC-AA--A--AATACTTG--CACATA-TACATGATCGAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
** * *
5614 AAATTGAAGCATCTACATTGA-
66 AAACCGAAGCATCTATACTGAG
* * * * * * *
5635 CACACACATTGCATTATTGGATAAACCGAAGCATCTATGCT-G-ACATACAGAGCATCATCGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
5698 AAACCAAAGAATCTATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * * * * *
5719 CACACATAGTGCATCATCGGATAAATCGAAGCATCTATACTAGTATATATAGTGTATCATCGAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
5784 ACA-CGAAAACATCTATACT--G
66 AAACCG-AAGCATCTATACTGAG
* * * * *
5804 -ACACACAGTGCATCATTGGATAAACTGAAGCATCTATACTGGTACACACAGTGAATCATCAAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
5868 AAAGCGAAGTATCTATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * *
5889 CACACA-A-TGCATCATCGGGTAAATCGAAGCATCTATACTGGTACACACAATGCATTATC-AGA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGA-A
** *
5951 TAAATTGAAGCATCTATATTGA-
65 TAAACCGAAGCATCTATACTGAG
* * * *** * *
5973 CACACAAAGTGCATGACCGGATAAAATAAAGCATCTATACTGGCACACATAGTGCATCATCGGAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
** *
6038 AAATTGAAGCATCTATACT-AA
66 AAACCGAAGCATCTATACTGAG
* * * * * * * * * ** *
6059 CACGCATAGTGTATCATCGAATACATCAAAACATCTATACTGGCACACACTA-TTCATTTTCGGA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACAC-AGTGCATCATCGAA
* *
6123 TAAACAGAAGCATTTATACTGA-
65 TAAACCGAAGCATCTATACTGAG
* * * *** * * * * *
6145 CATACAAAGTGCATAATAAAATAAATCAAAGCATTTATACTGGCACACACAGTGCAACATCGTAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* * * *
6210 AAACCAAAGTAACTATAATG-G
66 AAACCGAAGCATCTATACTGAG
* * * * * * * **
6231 CACACGCAGTGCATTATCGGATAAATCGAAGCATTTATACTGGGACACATAGTGCATTATCGGGT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
6296 AAACTGAAGCATTTATACTGA-
66 AAACCGAAGCATCTATACTGAG
* * * * * * **
6317 CACACATAGTGCATCATCGGGTAAACAGAAGCATTTATACTGACACACATAGTGCATCATCGGGT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
6382 AAACAGAAGCATTTATACTGA-
66 AAACCGAAGCATCTATACTGAG
* * * * * * * *
6403 CATATACAGTGCATCTTTAC-G-TAAACCGAAGCGTCTATACAGGCACACAAAATGCATCATCGG
1 CACACACAGTGCATC-AT-CGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGA
* * * * *
6466 GTAAATCAAAGCATTTATATTGA-
64 ATAAACCGAAGCATCTATACTGAG
* * * * * * * * * * * * *
6489 AACAGACAATGCATCAAT-GAATATACTGAAG-AGACTATACCGGAACATATAGTCCATCATCGG
1 CACACACAGTGCATC-ATCGGATAAACCGAAGCA-TCTATACTGGCACACACAGTGCATCATCGA
* * *
6552 ATATACCAAAGCATTTATACT-AG
64 ATAAACCGAAGCATCTATACTGAG
* * *
6575 CATACACACAGTGCATCATCGAATAAAGCAAAGCATCTATACTGGCACCCACACAGTGCATCATC
1 C--ACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCA--CACACAGTGCATCATC
* *
6640 GGATAAATCGAAGCATCTATACT-AG
62 GAATAAACCGAAGCATCTATACTGAG
* * * *
6665 CACCCACATAGTGCATCATCGGATAAATCGAAGCATCTATACTGGCAGCCATACAGTGCATTATC
1 CA--CACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCA--CACACAGTGCATCATC
*
6730 GGATAAACCGAAGCATCTATACT-AG
62 GAATAAACCGAAGCATCTATACTGAG
* * * ** ** * * * *
6755 CACACATAATGTATCATAAGATAAATTGAAGTATCTATACTGGTACACACAGTGCATAATAGAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
*
6820 AAACTGAAGCATCTATACT-AG
66 AAACCGAAGCATCTATACTGAG
* * *** * *** * * **
6841 TACACAGCA---CATCGTTAAATAAACCGAAGCAATAGTGCATTA-TTAAATAAACCAAAGCATC
1 CACACA-CAGTGCATCATCGGATAAACCGAAGC-AT-CT--A-TACTGGCACACA-CAGTGCATC
* * * * * *
6902 TATACTG-GTACACAG-AG--TATATCCTTGGG
59 -AT-C-GAATAAACCGAAGCATCTATAC-TGAG
* * * * * * * * **
6931 TA-A-ACCGAAGCATCAAC--ACTAGCACACAC-AGTGCATC-AT-C--GAATAAACTAAAGCAT
1 CACACACAG-TGCATCATCGGA-TA--A-AC-CGA-AGCATCTATACTGGCACACAC-AGTGCAT
* * * *** * *
6987 CTTTACTGGCATACACAGCGCCTCATCGAATAAATCGAAG
58 C---A-TCGAATA-A-ACCGAAGCATC-TAT-ACT-G-AG
* * *
7027 CATTTATATTGACACACACTGTGCATCATCGAATAAACCGAAGCATCTATAATGGCACACATAGT
1 C----------ACACACA--GTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGT
* * * * *
7092 ACATCATTGAGTAAACCAAAGTATCTATACT--G
54 GCATCATCGAATAAACCGAAGCATCTATACTGAG
* * * * * * * ** *
7124 --CATACAGTGCATTATC-AAGTAAACTGAAACATCTACACTGACACACATTGTGCATCATCGGA
1 CACACACAGTGCATCATCGGA-TAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAA
** *
7186 TAAACAAAAGCATCTATAGTG-G
65 TAAACCGAAGCATCTATACTGAG
* * * ** ** * * *
7208 CACAAAAAGTGCATCTTCAAATAAATTGAAGCATCTATACTGGCAAACACAGT--ATCGTCGAGT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
*
7271 AAACTGAAGCATCTATACTG-G
66 AAACCGAAGCATCTATACTGAG
** * * * * *
7292 CACACACAGTATATTATC-GAGTAAATCGAAACATCTATACTGGCACACA-TGATGCATTATCGA
1 CACACACAGTGCATCATCGGA-TAAACCGAAGCATCTATACTGGCACACACAG-TGCATCATCGA
* * *
7355 GTAAATCGAAGCATCTATATTG-G
64 ATAAACCGAAGCATCTATACTGAG
* * * ** * * * ** *
7378 CAAACACAGTGTATCATCGGGTAAACCGAATTATCTATA-TCGACGCACACAGTACGCCATCAAA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACT-GGCACACACAGTGCATCATCGAA
* *** *
7442 TCAATTAAAGAATCTATACTGA-
65 TAAACCGAAGCATCTATACTGAG
* * * * *** * * *
7464 CACACACAGTGCCTCATCGAATAAATCAAAATGTCTATA-TTG-ACACACAGTGCATTATCGATT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
7527 AAACTGAAACATCTATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * *
7548 TACACATAGTGCATTATC-GAGTAAACCAAAGCATCTATACTGG--CACACAGTGCATTATCTG-
1 CACACACAGTGCATCATCGGA-TAAACCGAAGCATCTATACTGGCACACACAGTGCATCATC-GA
* * *
7609 GTAAA-CGAAAACATTTATACTG-G
64 ATAAACCG-AAGCATCTATACTGAG
* * ** * ** * * *
7632 TATACATTGTGCACCATCGGATAAATAGAAGCATCTATAGTGGCACA-ATAAGTGCATCTTCGAA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACA-CAGTGCATCATCGAA
** *
7696 TAAAGTGAAGCATCTATACT-AA
65 TAAACCGAAGCATCTATACTGAG
* ** * * * * * * * * * *
7718 CACACAAAGTGTGTTATCAGATAAACTGAAACATCTATAGTAGCAAACACAGTGTATCGTCGAGT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
7783 AAATCGAAGCATTTATACTGA-
66 AAACCGAAGCATCTATACTGAG
* * * * * * * *
7804 CACACACAGTGCATTATCGGGTAAATCGAAGCATTTATACTGGCACACATAATGTATTATC-AAG
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAA-
* *
7868 TAAACCGAAGCATATATACAG-G
65 TAAACCGAAGCATCTATACTGAG
* * ** * * * * * * *
7890 CACACATAATATATTATCTGG-TAAATCAAAGCATCTATACTAGCACACACAGTACATC-GCAGG
1 CACACACAGTGCATCATC-GGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATC-GA
* * *
7953 GTGAACCGAAGCATTTATACT-AG
64 ATAAACCGAAGCATCTATACTGAG
* * * ** * * * *
7976 TACACACAATGCATCGTCGGGCAAACAC-AGTGCATCTATACTAGCAAACACAGTGCATCATCGG
1 CACACACAGTGCATCATCGGATAAAC-CGA-AGCATCTATACTGGCACACACAGTGCATCATCGA
* *
8040 ATAAATCGAAGCATCTATACT-AT
64 ATAAACCGAAGCATCTATACTGAG
* * * ** ** * * * * *
8063 CACACAAAGTGTACCATCTCATAAATTGAAGCATCTATAC-GAGAACACATAATGCATTATCTAA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTG-GCACACACAGTGCATCATCGAA
* *
8127 AAAACCAAAGCATCTATACT-AG
65 TAAACCGAAGCATCTATACTGAG
* * * * * * *
8149 CACGCACAGTGCATC-T--AATAAATCGAAGCATCTATACTAGCACACATAGTGCCTCATCTAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
* *
8211 AAATCAAAGCATCTATACT-AG
66 AAACCGAAGCATCTATACTGAG
* * ** * ** * * * *
8232 CAAACACAATGCATCATCTAAAAAACAAAAGCATCTATACTAGCACATATAGTGCGTCATC-AGA
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGA-A
* *
8296 TAAACC-AAGGCATTTATTCT-AG
65 TAAACCGAA-GCATCTATACTGAG
* * * *
8318 CACACACAATGCATCATCAGG-TAAACTGATA-CAT-TCATATTGGCTCACACAGTGCATCATCG
1 CACACACAGTGCATCATC-GGATAAACCGA-AGCATCT-ATACTGGCACACACAGTGCATCATCG
* ** * * *
8380 ATTAAATTGAGGTATCTATACTG-C
63 AATAAACCGAAGCATCTATACTGAG
* * * * * ** *
8404 CACACGCAGTACATCATC-GAGTAAACCG-AGACCTCTATACTAGG-ATACATAGTTTATTATCG
1 CACACACAGTGCATCATCGGA-TAAACCGAAG-CATCTATACT-GGCACACACAGTGCATCATCG
** * * * *
8466 GGTACACTGAGGTATCTATACT--G
63 AATAAACCGAAGCATCTATACTGAG
** * * *
8489 CACACACAGTGCATCATCAGG-TAAGTCGAAGCATCTATACTAGCACACATAGTGTC-TCATTGA
1 CACACACAGTGCATCATC-GGATAAACCGAAGCATCTATACTGGCACACACAGTG-CATCATCGA
* * * * * *
8552 GTAAACTGAGGCACCAATATTG-G
64 ATAAACCGAAGCATCTATACTGAG
* * * * * *
8575 CACACATAGTGCATCATC-AAGTAAACCGAGAG-ATTTATGCTGGCACACATAGTTCATCATC-A
1 CACACACAGTGCATCATCGGA-TAAACCGA-AGCATCTATACTGGCACACACAGTGCATCATCGA
* * * *
8637 AGTAAATCGAGGTATCTATATTG-G
64 A-TAAACCGAAGCATCTATACTGAG
* * * * * * **
8661 CACACACAGTGCATCATC-GAGTAAACCAAAGGATCTGTACTGCCACACACAATGCATCATTGGG
1 CACACACAGTGCATCATCGGA-TAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAA
*
8725 TAAACAG-AGACATCTATACTG-G
65 TAAACCGAAG-CATCTATACTGAG
* * * * * * * * *
8747 TATACACAGTGTATCTTCGGGTAAACAGAGGCATCTAAACTGGCACAAACAGTG-ATCATC-AAG
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAA-
* *
8810 TAAATCGAGGCATCTATACTG-G
65 TAAACCGAAGCATCTATACTGAG
*** ** *** * ** * *
8832 CACATGTAGTATATCATATAATAAATCGAAGCATCTATACTGGCACACACAGTATATAATCTAAT
1 CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
** *
8897 AAATTGAAGCATATATACTG-G
66 AAACCGAAGCATCTATACTGAG
* * * * * * * * *
8918 CACACAGAGTGTAACATC-AAGTAAATCG-AGACATCTATATTGGCACACAAAGTACATAATCGA
1 CACACACAGTGCATCATCGGA-TAAACCGAAG-CATCTATACTGGCACACACAGTGCATCATCGA
* * * * * *
8981 GTTAATCGAGGTATCTATACTG-C
64 ATAAACCGAAGCATCTATACTGAG
*
9004 CATACACAGTGCATCATCG
1 CACACACAGTGCATCATCG
9023 AGTAAATTGA
Statistics
Matches: 4675, Mismatches: 1225, Indels: 561
0.72 0.19 0.09
Matches are distributed among these distances:
74 52 0.01
75 3 0.00
76 13 0.00
77 8 0.00
78 33 0.01
79 64 0.01
80 23 0.00
81 42 0.01
82 7 0.00
83 172 0.04
84 1047 0.22
85 193 0.04
86 2351 0.50
87 107 0.02
88 265 0.06
89 22 0.00
90 196 0.04
91 9 0.00
92 2 0.00
93 6 0.00
94 6 0.00
95 1 0.00
96 1 0.00
97 1 0.00
101 2 0.00
102 2 0.00
103 5 0.00
104 1 0.00
105 4 0.00
106 8 0.00
107 6 0.00
108 3 0.00
109 12 0.00
110 7 0.00
111 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (87 bp):
CACACACAGTGCATCATCGGATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCGAAT
AAACCGAAGCATCTATACTGAG
Found at i:3314 original size:129 final size:129
Alignment explanation
Indices: 2834--8966 Score: 1248
Period size: 129 Copynumber: 48.1 Consensus size: 129
2824 CCGAAGTAAT
* * * * * * *
2834 TATACTGGCACATACAGTGCATCATAGGATATA-TCAAA-ACATCAATACTAGCACTCACACAGT
1 TATACTGACACACATAGTGCATCATAGAATAAACT-AAAGA-ATCTATACTAGCA--CACAAAGT
* * ** * * *
2897 GCCTCATCAGATAAACCGAAGCATCTATACTGGCACCCACACAGTGCATCATGGGATAAACCGAA
62 ACATCATCAGATAAACTAAAGCATCTATACTGGCA--CACACAGTGCATCATCGAATAAATCGAA
*
2962 GCATC
125 ACATC
* * * ** * *
2967 TATACTAACACAAACA-AG-GCATCATTGAATATACCGAAGTAA-CTATACGAGCACATACAA-T
1 TATACTGACAC--ACATAGTGCATCATAGAATAAACTAAAG-AATCTATACTAGCACACA-AAGT
* * * ** * * * * * *
3028 GCATCATCGGATATACCGAAGCATCTATACTGGCATAAACAGTGCATCGTCGAGTAAACCGAAGC
62 ACATCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAAC
*
3093 ATT
127 ATC
* * * * * * *
3096 TATACTG--GCACATAGTGCATCATTGGATAAA-TCAAAGCATCAATACTAGCACACACAGTGCA
1 TATACTGACACACATAGTGCATCATAGAATAAACT-AAAGAATCTATACTAGCACACAAAGTACA
* * ** * * * *
3158 TAAAC-GAATAAACCGAAGAATCAATACTGGTACACACAGTGCATCATCGAAAAAATCGAAACAT
65 TCATCAG-ATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACAT
3222 C
129 C
* * * *
3223 TATACTGACACACACAGTGCATCATAGGATAAACTGAAGAATCTATACT-G-ACAAGCAAAGTGC
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCAC-A-CAAAGTAC
** * * * *
3286 ATCATTGGGTAAA-TCAAAGCATTTATACTGGCACACATAGTGCATCGTCGAATAAATCGAAACA
64 ATCATCAGATAAACT-AAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACA
3350 TC
128 TC
* ** * *
3352 TACACTGACACACATAGTGCATCATTTAATAAACTAAAGCATCTATACTAGCACACATAGTACAT
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACAT
* * * *
3417 CATCAGATAAACTGAAGCATCTATACTAGCACACACAGTGCATCATCGGATAAA-CAGAAGCATC
66 CATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATC-GAAACATC
* * * * * * **
3481 AATACTGACACACATAGTGCATCATCAG-ATACACCAAA-ACATCTACACTCGCACACATAGTGT
1 TATACTGACACACATAGTGCATCAT-AGAATAAACTAAAGA-ATCTATACTAGCACACAAAGTAC
* * * * * * * *
3544 ATCATCGGATACATTGAA--A---ATACTGG--CACACAGTGTATCATTGAATAAATTGAAAAAT
64 ATCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACAT
3602 C
129 C
** * * * * * ** * * * * *
3603 TACCCTGACACACACAGCGCAACATTGGATAAACCGAAGCATCTATACTGGCACAC--ACTGCAA
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACAT
** ** * * * * * * * *
3666 CATTGGATAAACCGAAGAATCTATATTGACATACACAGTGTATTATCGGATAAATCGAAGCATC
66 CATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACATC
* * * * * * ** * * *
3730 TATATTGGCACACTTAGTGCATCATTAGACA-CATCGAAA-CTTCTATACTAGAACATACAA-TG
1 TATACTGACACACATAGTGCATCA-TAGA-ATAAACTAAAGAATCTATACTAGCACACA-AAGTA
* * *** * * * *
3792 CATCATCGGATAAACTGAAGCATCTATACTAAAACACACGGTGCATCATCGGATAAA-CTAAAGT
63 CATCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAA-C
*
3856 ATT
127 ATC
* * * ** * * *
3859 TATA-TCGGCACACACAGTGCATCATTGAATAAACCGAAGGATCTATACTAGCACACACAGTGCA
1 TATACT-GACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACA
* * * * * * * *
3923 TCATC-GAATAAACTGAAGCATTTATACTGACACATAAAGTACATCATCGGATAAATTGAAACAT
65 TCATCAG-ATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACAT
3987 C
129 C
* * ** * * * *
3988 --TA-T-----A-AT-GT--ATCATCGAATATACCGAAGTAA-CTATACTGGCACATACAGTGCA
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAG-AATCTATACTAGCACACAAAGTACA
* * * * ** * * *
4040 TCATCGGATATA-TCAAAACATCAATACTAACACCCACACAGTGCCTCATC-AGATAAACCGAAG
65 TCATCAGATAAACT-AAAGCATCTATACTGGCA--CACACAGTGCATCATCGA-ATAAATCGAAA
4103 CATC
126 CATC
* * * * ** * *
4107 TATACTGGCACCCACACAGTGCATCATGGGATAAACCGAAGCATCTATACT-GACACAAACAAG-
1 TATACT-G-ACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAG-CACACA-AAGT
* * ** * * * * * * * * *
4170 GCATCATC-GAATATACCGAAGTAACTATACTAGCACATACAATGCATCATCGGATATACCGAAG
62 ACATCATCAG-ATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAA
4234 CATC
126 CATC
* * * * * * * * * *
4238 TATACTGGCATAAACAGTGCATCGTCGAGTAAA-TAGAAGCATCTATACTGGCACAC--AGTGCA
1 TATACTGACACACATAGTGCATCATAGAATAAACTA-AAGAATCTATACTAGCACACAAAGTACA
** ** ** * * * * * *
4300 TCATTTGATAAACCGAATAATCAATACTGGTACACATAGTACATCATCGGATAAA-CAGAAGCAT
65 TCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATC-GAAACAT
4364 C
129 C
* * * * * * * * * *
4365 AATACTGACACAC--AGTGTATCATCAG-ATACACCGAAA-CATTTACACTGGCACACATAGTAT
1 TATACTGACACACATAGTGCATCAT-AGAATA-AACTAAAGAATCTATACTAGCACACAAAGTAC
* * * * * * *
4426 ATCATCGGATACATTGAA--A---ATACTGGCACACACAGTGTATCATTGAATAAATCGAAAAAT
64 ATCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACAT
4486 C
129 C
** * * * * * ** * * * * *
4487 TACCCTGA-ACACACAGCGCAACATTGGATAAACCGAAGCATCTATACTGGCACAC--ACTGCAA
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACAT
* ** * * * ** * *
4549 CATCGGATAAACCGAAGAATCTATATTGACACACACAGTATATCATCGGATAAATCGAAGCATC
66 CATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACATC
* * * * * * * ** * * *
4613 TATATTGGCACACATAGTGTATCATTGGATACACCGAAA-CTTCTATACTAGAACATACAA-TGC
1 TATACTGACACACATAGTGCATCATAGAATA-AACTAAAGAATCTATACTAGCACACA-AAGTAC
* * ** * * * *
4676 ATCATCGGATAAACTGAAGCATCTATACTGAAACACACAGTGCAGCATCGGATAAA-CTAAAGTA
64 ATCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAA-CA
4740 TC
128 TC
* * * * ** * * *
4742 TATATTGGCACACACAGTGCATAATTA-AATAAACCGAAGCATCTATACTAGCACACACAGTGCA
1 TATACTGACACACATAGTGCATCA-TAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACA
* * * * * * *
4806 TCATC-GAATAAACTGAAGCATTTATACTGACACATAAAGTACATCATCGAATAAATTGAAACAT
65 TCATCAG-ATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACAT
4870 C
129 C
* * * * * * * *
4871 TATACTGGCACAC--AGTGCATCATTGGATAAACTGAAGCATCTATACT-GAAACACATAGTGCA
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAG-CACACAAAGTACA
* * * * *
4933 TTATC-GAAAACACTAAAACATCTATACTGG--CACACAGTGCATCATCGAATACA-CTAAAACA
65 TCATCAGATAA-ACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATC-GAAACA
4994 TC
128 TC
* * * * ** * *
4996 TATACTGGCACATACAGTGTATCATCA-AATAAACCGAAGCATCTATACT-G-ACACATAGTACA
1 TATACTGACACACATAGTGCATCAT-AGAATAAACTAAAGAATCTATACTAGCACACAAAGTACA
** * * * * ** * * * * *
5058 TCATTGGGTAAA-TCGAAGCGTCTACACTGGCACTTACAATGCATCACCGAGTAGA-CAAAAGCA
65 TCATCAGATAAACT-AAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAA-CA
*
5121 TT
128 TC
* * * ** * * * * *
5123 TATACTGGA-GCACATAGTACATCATCGAATAAACCGAAGCATTTATATTGGCACAC--AGTGCA
1 TATACT-GACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACA
* * * * * * *
5185 TCATC-GAATAAA-TCGAAGCATTTATACTTGCACACATAGCGCACCATCGAATAAATCGAAGCA
65 TCATCAG-ATAAACT-AAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACA
5248 TC
128 TC
* * * * *
5250 TATAC-AAGCACACACAGTGCATCATCCG-ATAAACCAGAGAATCTATACT-GACACACACACAG
1 TATACTGA-CACACATAGTGCATCAT-AGAATAAACTAAAGAATCTATACTAG-CACACA-A-AG
* * * * * ** ** *
5312 TGCATCATAAGATAGACTGAAGCATCCATACTAACATGCTA-AGTGCATCATC-AAGTTAATCGA
61 TACATCATCAGATAAACTAAAGCATCTATACTGGCACAC-ACAGTGCATCATCGAA-TAAATCGA
*
5375 AGCATC
124 AACATC
* ** * ** ** * * * *
5381 TATATTGGTACAC--AGTGCATCATCGGGTAAACCCAAGCATCTGTACT-GACACACACAGTGCA
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAG-CACACAAAGTACA
* * * * * ** * * * * * *
5443 TCATCTGATAAGCTGAAGTATTTATACAAGCACACCCAATACATCAT-TAGATAAA-CTGAAGCT
65 TCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGA-ATAAATC-GAAACA
5506 TC
128 TC
* * * * *
5508 TACACTGACACACATAGTGCATTATCAG-ATACAA--AAA-AATCTACACTAGCACACATAGTTC
1 TATACTGACACACATAGTGCATCAT-AGAATA-AACTAAAGAATCTATACTAGCACACAAAGTAC
* * * * * * * * *
5569 ATCATCGGATACACCAAA--A---ATACTTG--CACATA-TACATGATCGAATAAATTGAAGCAT
64 ATCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACAT
5626 C
129 C
* * * * * * * ** * * * *
5627 TACATTGACACACACATTGCATTATTGGATAAACCGAAGCATCTATGCT-G-ACATACAG-AGCA
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTA-CA
* * * * * *
5689 TCATCGGATAAACCAAAGAATCTATACTGGCACACATAGTGCATCATCGGATAAATCGAAGCATC
65 TCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACATC
* * * * * * * * *
5754 TATACT-AGTATATATAGTGTATCATCGAATACACGAAA-ACATCTATACT-G-ACACACAGTGC
1 TATACTGA-CACACATAGTGCATCATAGAATAAACTAAAGA-ATCTATACTAGCACACAAAGTAC
** * * * * * **
5815 ATCATTGGATAAACTGAAGCATCTATACTGGTACACACAGTGAATCATCAAATAAAGCGAAGTAT
64 ATCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACAT
5880 C
129 C
* * ** * * * * *
5881 TATACTGGCACACA-A-TGCATCATCGGGTAAA-TCGAAGCATCTATACTGGTACACACAA-TGC
1 TATACTGACACACATAGTGCATCATAGAATAAACT-AAAGAATCTATACTAGCACACA-AAGTAC
* * * * * * * * *
5942 ATTATCAGATAAATTGAAGCATCTATATTGACACACAAAGTGCATGACCGGATAAAAT--AAAGC
64 ATCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAAT-AAATCGAAA-C
6005 ATC
127 ATC
* * * * * * * * * **
6008 TATACTGGCACACATAGTGCATCATCGGATAAATTGAAGCATCTATACTAACACGCATAGTGTAT
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACAT
* * * ** * *
6073 CATC-GA-ATACATCAAAACATCTATACTGGCACACACTA-TTCATTTTCGGATAAA-CAGAAGC
66 CATCAGATAAAC-T-AAAGCATCTATACTGGCACACAC-AGTGCATCATCGAATAAATC-GAAAC
*
6134 ATT
127 ATC
* * * * * * * * *
6137 TATACTGACATACAAAGTGCATAATAAAATAAA-TCAAAGCATTTATACTGGCACACACAGTGCA
1 TATACTGACACACATAGTGCATCATAGAATAAACT-AAAGAATCTATACTAGCACACAAAGTACA
* * * * * * * * *
6201 ACATC-GTATAAACCAAAGTAACTATAATGGCACACGCAGTGCATTATCGGATAAATCGAAGCAT
65 TCATCAG-ATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACAT
*
6265 T
129 C
** * * ** * * * * *
6266 TATACTGGGACACATAGTGCATTATCGGGTAAACTGAAGCATTTATACT-GACACACATAGTGCA
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAG-CACACAAAGTACA
* * * * * ** *
6330 TCATCGGGTAAAC-AGAAGCATTTATACTGACACACATAGTGCATCATCGGGTAAA-CAGAAGCA
65 TCATCAGATAAACTA-AAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATC-GAAACA
*
6393 TT
128 TC
* * * * ** ** * *
6395 TATACTGACATATACAGTGCATCTTTACG--TAAACCGAAGCGTCTATAC-AGGCACACAAAATG
1 TATACTGACACACATAGTGCATC-ATA-GAATAAACTAAAGAATCTATACTA-GCACACAAAGTA
* * * * ** * * *
6457 CATCATCGGGTAAA-TCAAAGCATTTATATTGAAACAGACAATGCATCAAT-GAATATA-CTGAA
63 CATCATCAGATAAACT-AAAGCATCTATACTGGCACACACAGTGCATC-ATCGAATAAATC-GAA
*
6519 GAGA-C
125 -ACATC
* * * * * * * * * * *
6524 TATACCGGA-ACATATAGTCCATCATCGGATATACCAAAGCATTTATACTAGCATACACACAGTG
1 TATA-CTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGC--ACACAAAGTA
*
6588 CATCATC-GAATAAAGC-AAAGCATCTATACTGGCACCCACACAGTGCATCATCGGATAAATCGA
63 CATCATCAG-ATAAA-CTAAAGCATCTATACTGGCA--CACACAGTGCATCATCGAATAAATCGA
*
6651 AGCATC
124 AACATC
* * * * * *
6657 TATACTAGCACCCACATAGTGCATCATCGGATAAA-TCGAAGCATCTATACTGGCAGC-CATACA
1 TATACT-G-ACACACATAGTGCATCATAGAATAAACT-AAAGAATCTATACTAGCA-CACA-A-A
* * * ** * * * * * *
6720 GTGCATTATCGGATAAACCGAAGCATCTATACTAGCACACATAATGTATCAT-AAGATAAATTGA
60 GTACATCATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGA-ATAAATCGA
**
6784 AGTATC
124 AACATC
** * * * * *
6790 TATACTGGTACACACAGTGCATAATAGAATAAACTGAAGCATCTATACTAGTACAC--AG--CA-
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACAT
* * * * ** *
6850 CATC-GTTAAA-TAAA-C--CGA-A---G--CA-ATAGTGCATTATTAAATAAA-CCAAAGCATC
66 CATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAA-CATC
** * ** * * ** ** * * * * *
6902 TATACTGGTACACAGAGTATATCCTTGGGTAAACCGAAGCATCAACACTAGCACACACAGTGCAT
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACAT
* * * * * *
6967 CATC-GAATAAACTAAAGCATCTTTACTGGCATACACAGCGCCTCATCGAATAAATCGAAGCATT
66 CATCAG-ATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACATC
* * ** * * * *
7031 TATATTGACACACACT-GTGCATCATCGAATAAACCGAAGCATCTATAATGGCACACATAGTACA
1 TATACTGACACACA-TAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACA
* * * * *
7095 TCAT-TGAGTAAACCAAAGTATCTATACT-G--CATACAGTGCATTATC-AAGTAAA-CTGAAAC
65 TCATCAGA-TAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAA-TAAATC-GAAAC
7154 ATC
127 ATC
* * * * * * * * * *
7157 TACACTGACACACATTGTGCATCATCGGATAAACAAAAGCATCTATAGTGGCACAAAAAGTGCAT
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACAT
* * * * * * * *
7222 CTTCAAATAAATTGAAGCATCTATACTGGCAAACACAGT--ATCGTCGAGTAAA-CTGAAGCATC
66 CATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATC-GAAACATC
* * ** * * * * * * * *
7284 TATACTGGCACACACAGTATATTATCGAGTAAATCGAAA-CATCTATACTGGCACAC-ATGATGC
1 TATACTGACACACATAGTGCATCATAGAATAAA-CTAAAGAATCTATACTAGCACACAAAG-TAC
* * * * * ** * **
7347 ATTATC-GAGTAAA-TCGAAGCATCTATATTGGCAAACACAGTGTATCATCGGGTAAACCGAATT
64 ATCATCAGA-TAAACT-AAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAAC
7410 ATC
127 ATC
* * * ** * * * *
7413 TATA-TCGACGCACACAGTACGCCATCA-AATCAATTAAAGAATCTATACT-GACACACACAGTG
1 TATACT-GACACACATAGTGCATCAT-AGAATAAACTAAAGAATCTATACTAG-CACACAAAGTA
* * * * *
7475 CCTCATC-GAATAAATCAAAATG--TCTATA-TTG-ACACACAGTGCATTATCGATTAAA-CTGA
63 CATCATCAG-ATAAA-CTAAA-GCATCTATACTGGCACACACAGTGCATCATCGAATAAATC-GA
7534 AACATC
124 AACATC
** * * * * * * *
7540 TATACTGGTACACATAGTGCATTATCGAGTAAACCAAAGCATCTATACTGGCACAC--AGTGCAT
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACAT
* * * * * * * * ** * * * *
7603 TATCTGGTAAACGAAAACATTTATACTGGTATACATTGTGCACCATCGGATAAATAGAAGCATC
66 CATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACATC
* * * * * * * * ***
7667 TATAGTGGCACA-ATAAGTGCATCTTCGAATAAAGTGAAGCATCTATACTAACACACAAAGTGTG
1 TATACTGACACACAT-AGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACA
* * * * * * * *
7731 TTATCAGATAAACTGAAA-CATCTATAGTAGCAAACACAGTGTATCGTCGAGTAAATCGAAGCAT
65 TCATCAGATAAACT-AAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACAT
*
7795 T
129 C
* * * ** * * * *
7796 TATACTGACACACACAGTGCATTATCGGGTAAA-TCGAAGCATTTATACTGGCACACATAATGT-
1 TATACTGACACACATAGTGCATCATAGAATAAACT-AAAGAATCTATACTAGCACACA-AA-GTA
* ** * * * * ** * *
7859 -ATTATCA-AGTAAACCGAAGCATATATACAGGCACACATAATATATTATCTG-GTAAATC-AAA
63 CATCATCAGA-TAAACTAAAGCATCTATACTGGCACACACAGTGCATCATC-GAATAAATCGAAA
7920 GCATC
126 -CATC
* * ** ** * ** * * * *
7925 TATACT-AGCACACACAGTACATCGCAGGGTGAACCGAAGCATTTATACTAGTACACACAA-TGC
1 TATACTGA-CACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACA-AAGTAC
* * ** * * * * *
7988 ATCGTCGGGCAAAC-ACAGTGCATCTATACTAGCAAACACAGTGCATCATCGGATAAATCGAAGC
64 ATCATCAGATAAACTA-A-AGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAAC
8052 ATC
127 ATC
* * * *** * * * * * *
8055 TATACT-ATCACACAAAGTGTACCATCTCATAAATTGAAGCATCTATACGAGAACACATAA-TGC
1 TATACTGA-CACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACA-AAGTAC
* * * * * *
8118 ATTATCTA-AAAAACCAAAGCATCTATACTAGCACGCACAGTGCATC-T--AATAAATCGAAGCA
64 ATCATC-AGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACA
8179 TC
128 TC
* ** * * *
8181 TATACT-AGCACACATAGTGCCTCATCTAATAAA-TCAAAGCATCTATACTAGCAAACACAA-TG
1 TATACTGA-CACACATAGTGCATCATAGAATAAACT-AAAGAATCTATACTAGCACACA-AAGTA
* * * * * * *
8243 CATCATCTA-AAAAACAAAAGCATCTATACTAGCACATATAGTGCGTCATC-AGATAAA-CCAAG
63 CATCATC-AGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGA-ATAAATCGAA-
* *
8305 GCATT
125 ACATC
* * * * * * * * *
8310 TATTCTAGCACACACA-A-TGCATCATCAG-GTAAACTGATACATTC-ATATTGGCTCACACAGT
1 TATACT-G-ACACACATAGTGCATCAT-AGAATAAACT-AAAGAATCTATACTAGCACACAAAGT
* * * * * * * * * * *
8371 GCATCATC-GATTAAATTGAGGTATCTATACTGCCACACGCAGTACATCATCGAGTAAACCGAGA
62 ACATCATCAGA-TAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAA
*
8435 CCTC
126 CATC
* * ** * * ** * * * * * *
8439 TATACT-AGGATACATAGTTTATTATCGGGTACACTGAGGTATCTATACT-GCACACACAGTGCA
1 TATACTGA-CACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACA
* * * * * * * **
8502 TCATCAGGT-AAGTCGAAGCATCTATACTAGCACACATAGTGTC-TCATTGAGTAAA-CTGAGGC
65 TCATCAGATAAACT-AAAGCATCTATACTGGCACACACAGTG-CATCATCGAATAAATC-GAAAC
*
8564 ACC
127 ATC
* * * * ** * * * * *
8567 AATATTGGCACACATAGTGCATCATCA-AGTAAAC-CGAGAGATTTATGCTGGCACACATAGTTC
1 TATACTGACACACATAGTGCATCAT-AGAATAAACTAAAGA-ATCTATACTAGCACACAAAGTAC
* * * * * *
8630 ATCATCA-AGTAAA-TCGAGGTATCTATATTGGCACACACAGTGCATCATCGAGTAAA-CCAAAG
64 ATCATCAGA-TAAACT-AAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAA-
*
8692 GATC
126 CATC
* * * * * ** * * * * * **
8696 TGTACTGCCACACACAATGCATCATTGGGTAAAC-AGAGACATCTATACTGGTATACACAGTGTA
1 TATACTGACACACATAGTGCATCATAGAATAAACTAAAGA-ATCTATACTAGCACACAAAGTACA
* * * * * * **
8760 TCTTCGGGTAAAC-AGAGGCATCTAAACTGGCACAAACAGTG-ATCATC-AAGTAAATCGAGGCA
65 TCATCAGATAAACTA-AAGCATCTATACTGGCACACACAGTGCATCATCGAA-TAAATCGAAACA
8822 TC
128 TC
* ** ** * * * * * *
8824 TATACTGGCACATGTAGTATATCATATAATAAA-TCGAAGCATCTATACTGGCACACACAGTATA
1 TATACTGACACACATAGTGCATCATAGAATAAACT-AAAGAATCTATACTAGCACACAAAGTACA
* * * * * * * *
8888 TAATCTA-ATAAATTGAAGCATATATACTGGCACACAGAGTGTAACATC-AAGTAAATCGAGACA
65 TCATC-AGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAA-TAAATCGAAACA
8951 TC
128 TC
* *
8953 TATATTGGCACACA
1 TATACTGACACACA
8967 AAGTACATAA
Statistics
Matches: 4492, Mismatches: 1160, Indels: 700
0.71 0.18 0.11
Matches are distributed among these distances:
111 2 0.00
112 61 0.01
113 4 0.00
114 2 0.00
115 1 0.00
116 3 0.00
117 64 0.01
118 10 0.00
119 100 0.02
120 26 0.01
121 33 0.01
122 119 0.03
123 33 0.01
124 20 0.00
125 149 0.03
126 287 0.06
127 1009 0.22
128 270 0.06
129 1691 0.38
130 154 0.03
131 217 0.05
132 14 0.00
133 145 0.03
134 9 0.00
135 68 0.02
136 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (129 bp):
TATACTGACACACATAGTGCATCATAGAATAAACTAAAGAATCTATACTAGCACACAAAGTACAT
CATCAGATAAACTAAAGCATCTATACTGGCACACACAGTGCATCATCGAATAAATCGAAACATC
Found at i:4059 original size:74 final size:74
Alignment explanation
Indices: 3922--4061 Score: 181
Period size: 74 Copynumber: 1.9 Consensus size: 74
3912 CACACAGTGC
* ** **
3922 ATCATCGAATAAACTGAAGCATTTATACTGACACATAAAGTACATCATCGGATAAATTGAAACAT
1 ATCATCGAATAAACCGAAGCAACTATACTGACACATAAAGTACATCATCGGATAAATCAAAACAT
3987 CTATAATGT
66 CTATAATGT
* * * * * *
3996 ATCATCGAATATACCGAAGTAACTATACTGGCACATACAGTGCATCATCGGATATATCAAAACAT
1 ATCATCGAATAAACCGAAGCAACTATACTGACACATAAAGTACATCATCGGATAAATCAAAACAT
4061 C
66 C
4062 AATACTAACA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
74 55 1.00
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.26
Consensus pattern (74 bp):
ATCATCGAATAAACCGAAGCAACTATACTGACACATAAAGTACATCATCGGATAAATCAAAACAT
CTATAATGT
Found at i:4483 original size:38 final size:38
Alignment explanation
Indices: 4409--4483 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 38
4399 AAACATTTAC
* * * *
4409 ACTGGCACACATAGTATATCATCGGATACATTGAAAAT
1 ACTGGCACACACAGTATATCATCGAATAAATCGAAAAT
* *
4447 ACTGGCACACACAGTGTATCATTGAATAAATCGAAAA
1 ACTGGCACACACAGTATATCATCGAATAAATCGAAAA
4484 ATCTACCCTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (38 bp):
ACTGGCACACACAGTATATCATCGAATAAATCGAAAAT
Found at i:4530 original size:42 final size:41
Alignment explanation
Indices: 4466--4584 Score: 123
Period size: 41 Copynumber: 2.9 Consensus size: 41
4456 CACAGTGTAT
* * * *
4466 CATTGAATAAATCGAAAAATCTACCCTGAACACACAGC-GCAA
1 CATTGGATAAACCGAAGAATCTACACTG-ACACACA-CTGCAA
* * *
4508 CATTGGATAAACCGAAGCATCTATACTGGCACACACTGCAA
1 CATTGGATAAACCGAAGAATCTACACTGACACACACTGCAA
* * *
4549 CATCGGATAAACCGAAGAATCTATATTGACACACAC
1 CATTGGATAAACCGAAGAATCTACACTGACACACAC
4585 AGTATATCAT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
40 1 0.02
41 42 0.65
42 22 0.34
ACGTcount: A:0.41, C:0.26, G:0.14, T:0.18
Consensus pattern (41 bp):
CATTGGATAAACCGAAGAATCTACACTGACACACACTGCAA
Found at i:5129 original size:168 final size:170
Alignment explanation
Indices: 4656--5223 Score: 474
Period size: 168 Copynumber: 3.3 Consensus size: 170
4646 CCGAAACTTC
* * * * * *
4656 TATACTAGAACATACAATGCATCATCGGATAAA-CTGAAGCATCTATACTGAAACACACAGTGCA
1 TATACTGGCACATACAGTGCATCATCGAATAAATC-GAAGCATCTATACTG--ACACATAGTACA
* * * * * * ** * *** * ** *
4720 GCATCGGATAAACTAAAGTATCTATATTGGCACACACAGTGCAT-AATTAAATAAACCGAAGCAT
63 TCATTGGATAAACTGAAGCATCTACACTGAAACACATAGTGCATCACCGAAA-ACACTAAAACAT
*
4784 CTATACTAGCA-CACACAGTGCATCATCGAATAAACTGAAGCATT
127 CTATACT-GGAGCACACAGTGCATCATCGAATAAACTGAAGCATT
* * * * * * * *
4828 TATACTGACACATAAAGTACATCATCGAATAAATTGAAACATCTATACTGGCACACAGTGCATCA
1 TATACTGGCACATACAGTGCATCATCGAATAAATCGAAGCATCTATACTGACACATAGTACATCA
* * *
4893 TTGGATAAACTGAAGCATCTATACTGAAACACATAGTGCATTATCGAAAACACTAAAACATCTAT
66 TTGGATAAACTGAAGCATCTACACTGAAACACATAGTGCATCACCGAAAACACTAAAACATCTAT
* * * *
4958 ACT-G-GCACACAGTGCATCATCGAATACACTAAAACATC
131 ACTGGAGCACACAGTGCATCATCGAATAAACTGAAGCATT
* * *
4996 TATACTGGCACATACAGTGTATCATCAAATAAACCGAAGCATCTATACTGACACATAGTACATCA
1 TATACTGGCACATACAGTGCATCATCGAATAAATCGAAGCATCTATACTGACACATAGTACATCA
* * ** ** *
5061 TTGGGTAAA-TCGAAGCGTCTACACTGGCACTTACA-A-TGCATCACCGAGTAGAC-AAAAGCAT
66 TTGGATAAACT-GAAGCATCTACACTGAAAC--ACATAGTGCATCACCGAAAACACTAAAA-CAT
* * * *
5122 TTATACTGGAGCACATAGTACATCATCGAATAAACCGAAGCATT
127 CTATACTGGAGCACACAGTGCATCATCGAATAAACTGAAGCATT
* *
5166 TATATTGGCAC--ACAGTGCATCATCGAATAAATCGAAGCATTTATACTTGCACACATAG
1 TATACTGGCACATACAGTGCATCATCGAATAAATCGAAGCATCTATAC-TG-ACACATAG
5224 CGCACCATCG
Statistics
Matches: 321, Mismatches: 64, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
167 5 0.02
168 158 0.49
169 4 0.01
170 110 0.34
171 4 0.01
172 40 0.12
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.24
Consensus pattern (170 bp):
TATACTGGCACATACAGTGCATCATCGAATAAATCGAAGCATCTATACTGACACATAGTACATCA
TTGGATAAACTGAAGCATCTACACTGAAACACATAGTGCATCACCGAAAACACTAAAACATCTAT
ACTGGAGCACACAGTGCATCATCGAATAAACTGAAGCATT
Found at i:6978 original size:43 final size:43
Alignment explanation
Indices: 6886--9052 Score: 962
Period size: 43 Copynumber: 50.7 Consensus size: 43
6876 TGCATTATTA
* * * ** * *
6886 AATAAACCAAAGCATCTATACTGGTACACAGAGTATATCCTTG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
** * * *
6929 GGTAAACCGAAGCATCAACACTAGCACACACAGTGCATCATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
** * * * *
6972 AATAAACTAAAGCATCTTTACTGGCATACACAGCGCCTCATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * *
7015 AATAAATCGAAGCATTTATATTGACACACACTGTGCATCATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * *
7058 AATAAACCGAAGCATCTATAATGGCACACATAGTACATCATTG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * *
7101 AGTAAACCAAAGTATCTATACT-G--CATACAGTGCATTATC-
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * **
7140 AAGTAAACTGAAACATCTACACTGACACACATTGTGCATCATCG
1 AA-TAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* ** * * * * *
7184 GATAAACAAAAGCATCTATAGTGGCACAAAAAGTGCATCTTCA
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
** * *
7227 AATAAATTGAAGCATCTATACTGGCAAACACAGT--ATCGTCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * ** *
7268 AGTAAACTGAAGCATCTATACTGGCACACACAGTATATTATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * *
7311 AGTAAATCGAAACATCTATACTGGCACACA-TGATGCATTATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAG-TGCATCATCG
* * * * *
7354 AGTAAATCGAAGCATCTATATTGGCAAACACAGTGTATCATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
** ** * * * ** *
7397 GGTAAACCGAATTATCTATA-TCGACGCACACAGTACGCCATCA
1 AATAAACCGAAGCATCTATACT-GGCACACACAGTGCATCATCG
* *** * * *
7440 AATCAATTAAAGAATCTATACTGACACACACAGTGCCTCATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * *** * *
7483 AATAAATCAAAATGTCTATA-TTG-ACACACAGTGCATTATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * * *
7524 ATTAAACTGAAACATCTATACTGGTACACATAGTGCATTATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * *
7567 AGTAAACCAAAGCATCTATACTGG--CACACAGTGCATTATCTG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATC-G
* * * * * ** *
7609 -GTAAA-CGAAAACATTTATACTGGTATACATTGTGCACCATCG
1 AATAAACCG-AAGCATCTATACTGGCACACACAGTGCATCATCG
* ** * * *
7651 GATAAATAGAAGCATCTATAGTGGCACA-ATAAGTGCATCTTCG
1 AATAAACCGAAGCATCTATACTGGCACACA-CAGTGCATCATCG
** ** * ** *
7694 AATAAAGTGAAGCATCTATACTAACACACAAAGTGTGTTATC-
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * * * *
7736 AGATAAACTGAAACATCTATAGTAGCAAACACAGTGTATCGTCG
1 A-ATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * *
7780 AGTAAATCGAAGCATTTATACTGACACACACAGTGCATTATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
** * * * * * *
7823 GGTAAATCGAAGCATTTATACTGGCACACATAATGTATTATC-
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * ** *
7865 AAGTAAACCGAAGCATATATACAGGCACACATAATATATTATCTG
1 AA-TAAACCGAAGCATCTATACTGGCACACACAGTGCATCATC-G
* * * * * *
7910 -GTAAATCAAAGCATCTATACTAGCACACACAGTACATC-GCAG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATC-G
** * * * * * *
7952 GGTGAACCGAAGCATTTATACTAGTACACACAATGCATCGTCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
*** * * *
7995 GGCAAACAC-AGTGCATCTATACTAGCAAACACAGTGCATCATCG
1 AATAAAC-CGA-AGCATCTATACTGGCACACACAGTGCATCATCG
* * ** * * * *
8039 GATAAATCGAAGCATCTATACTATCACACAAAGTGTACCATCT
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* ** * * * * *
8082 CATAAATTGAAGCATCTATAC-GAGAACACATAATGCATTATCT
1 AATAAACCGAAGCATCTATACTG-GCACACACAGTGCATCATCG
* * * *
8125 AAAAAACCAAAGCATCTATACTAGCACGCACAGTGCATC-T--
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * *
8165 AATAAATCGAAGCATCTATACTAGCACACATAGTGCCTCATCT
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * * *
8208 AATAAATCAAAGCATCTATACTAGCAAACACAATGCATCATCT
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* ** * * * *
8251 AAAAAACAAAAGCATCTATACTAGCACATATAGTGCGTCATC-
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * *
8293 AGATAAACC-AAGGCATTTATTCTAGCACACACAATGCATCATC-
1 A-ATAAACCGAA-GCATCTATACTGGCACACACAGTGCATCATCG
* * * *
8336 AGGTAAACTGATA-CAT-TCATATTGGCTCACACAGTGCATCATCG
1 A-ATAAACCGA-AGCATCT-ATACTGGCACACACAGTGCATCATCG
* ** * * * * *
8380 ATTAAATTGAGGTATCTATACTGCCACACGCAGTACATCATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * ** *
8423 AGTAAACCG-AGACCTCTATACTAGG-ATACATAGTTTATTATCG
1 AATAAACCGAAG-CATCTATACT-GGCACACACAGTGCATCATCG
** * * * *
8466 GGTACACTGAGGTATCTATACT-GCACACACAGTGCATCATC-
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* ** * * *
8507 AGGTAAGTCGAAGCATCTATACTAGCACACATAGTGTC-TCATTG
1 A-ATAAACCGAAGCATCTATACTGGCACACACAGTG-CATCATCG
* * * * * * *
8551 AGTAAACTGAGGCACCAATATTGGCACACATAGTGCATCATC-
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * *
8593 AAGTAAACCGAGAG-ATTTATGCTGGCACACATAGTTCATCATC-
1 AA-TAAACCGA-AGCATCTATACTGGCACACACAGTGCATCATCG
* * * *
8636 AAGTAAATCGAGGTATCTATATTGGCACACACAGTGCATCATCG
1 AA-TAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * * * *
8680 AGTAAACCAAAGGATCTGTACTGCCACACACAATGCATCATTG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
** * * * * *
8723 GGTAAACAG-AGACATCTATACTGGTATACACAGTGTATCTTCG
1 AATAAACCGAAG-CATCTATACTGGCACACACAGTGCATCATCG
** * * * *
8766 GGTAAACAGAGGCATCTAAACTGGCACAAACAGTG-ATCATC-
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * *** ** **
8807 AAGTAAATCGAGGCATCTATACTGGCACATGTAGTATATCATAT
1 AA-TAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* ** * *
8851 AATAAATCGAAGCATCTATACTGGCACACACAGTATATAATCT
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
** * * * *
8894 AATAAATTGAAGCATATATACTGGCACACAGAGTGTAACATC-
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* * * * *
8936 AAGTAAATCG-AGACATCTATATTGGCACACAAAGTACATAATCG
1 AA-TAAACCGAAG-CATCTATACTGGCACACACAGTGCATCATCG
* * * * * * *
8980 AGTTAATCGAGGTATCTATACTGCCATACACAGTGCATCATCG
1 AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
* ** * * *
9023 AGTAAATTGAGGTATCTATATTGGCACACA
1 AATAAACCGAAGCATCTATACTGGCACACA
9053 TTGCTTCATA
Statistics
Matches: 1616, Mismatches: 442, Indels: 132
0.74 0.20 0.06
Matches are distributed among these distances:
39 1 0.00
40 60 0.04
41 101 0.06
42 85 0.05
43 1314 0.81
44 54 0.03
45 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.25
Consensus pattern (43 bp):
AATAAACCGAAGCATCTATACTGGCACACACAGTGCATCATCG
Found at i:7473 original size:213 final size:209
Alignment explanation
Indices: 7224--7614 Score: 475
Period size: 213 Copynumber: 1.8 Consensus size: 209
7214 AAGTGCATCT
* * * * * **
7224 TCAAATAAATTGAAGCATCTATACTGGCAAACACAGT-ATCGTCGAGTAAA-CTGAAGCATCTAT
1 TCAAATAAATTAAAGAATCTATACTGACAAACACAGTCATCATCGAATAAATCAAAAG--TCTAT
*
7287 ACTGGCACACACAGTATATTATCGAGTAAA-TCGAAACATCTATACTGGCACACAT-GATGCATT
64 A-TGG-ACACACAGTACATTATCGAGTAAACT-GAAACATCTATACTGGCACACATAG-TGCATT
* * * *
7350 ATCGAGTAAATCGAAGCATCTATATTGGCAAACACAGTGTATCATCGGGTAAACCGAATTATCTA
125 ATCGAGTAAACCAAAGCATCTATACTGGC--ACACAGTGCATCATCGGGTAAACCGAATTATCTA
7415 TATCGACGCACACAGTACGCCA
188 TATCGACGCACACAGTACGCCA
* * *
7437 TCAAATCAATTAAAGAATCTATACTGACACACACAGTGCCTCATCGAATAAATCAAAATGTCTAT
1 TCAAATAAATTAAAGAATCTATACTGACAAACACAGT-CATCATCGAATAAATCAAAA-GTCTAT
* * * *
7502 ATTGACACACAGTGCATTATCGATTAAACTGAAACATCTATACTGGTACACATAGTGCATTATCG
64 ATGGACACACAGTACATTATCGAGTAAACTGAAACATCTATACTGGCACACATAGTGCATTATCG
* *
7567 AGTAAACCAAAGCATCTATACTGGCACACAGTGCATTATCTGGTAAAC
129 AGTAAACCAAAGCATCTATACTGGCACACAGTGCATCATCGGGTAAAC
7615 GAAAACATTT
Statistics
Matches: 151, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
211 20 0.13
213 107 0.71
214 4 0.03
215 16 0.11
216 3 0.02
217 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (209 bp):
TCAAATAAATTAAAGAATCTATACTGACAAACACAGTCATCATCGAATAAATCAAAAGTCTATAT
GGACACACAGTACATTATCGAGTAAACTGAAACATCTATACTGGCACACATAGTGCATTATCGAG
TAAACCAAAGCATCTATACTGGCACACAGTGCATCATCGGGTAAACCGAATTATCTATATCGACG
CACACAGTACGCCA
Found at i:8207 original size:126 final size:128
Alignment explanation
Indices: 8007--8323 Score: 383
Period size: 126 Copynumber: 2.5 Consensus size: 128
7997 CAAACACAGT
* * *
8007 GCATCTATACTAGCAAACACAGTGCATCATCGGATAAATCGAAGCATCTATACTATCACACAAAG
1 GCATCTATACTAGCACACACAGTGCATCATC-AATAAATCGAAGCATCTATACTAGCACACAAAG
* ** * * *
8072 TGTACCATCTCATAAATTGAAGCATCTATACGAG-AACACATAATGCATTATCTAAAAAACCAAA
65 TGTACCATCTAATAAATCAAAGCATCTATACGAGCAA-ACACAATGCATCATCTAAAAAACAAAA
* *
8136 GCATCTATACTAGCACGCACAGTGCATC-T-AATAAATCGAAGCATCTATACTAGCACACATAGT
1 GCATCTATACTAGCACACACAGTGCATCATCAATAAATCGAAGCATCTATACTAGCACACAAAGT
* *
8199 G-CCTCATCTAATAAATCAAAGCATCTATACTAGCAAACACAATGCATCATCTAAAAAACAAAA
66 GTAC-CATCTAATAAATCAAAGCATCTATACGAGCAAACACAATGCATCATCTAAAAAACAAAA
* * * * * *
8262 GCATCTATACTAGCACATATAGTGCGTCATCAGATAAA-CCAAGGCATTTATTCTAGCACACA
1 GCATCTATACTAGCACACACAGTGCATCATCA-ATAAATCGAA-GCATCTATACTAGCACACA
8324 CAATGCATCA
Statistics
Matches: 162, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
125 1 0.01
126 105 0.65
127 3 0.02
128 5 0.03
129 48 0.30
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (128 bp):
GCATCTATACTAGCACACACAGTGCATCATCAATAAATCGAAGCATCTATACTAGCACACAAAGT
GTACCATCTAATAAATCAAAGCATCTATACGAGCAAACACAATGCATCATCTAAAAAACAAAA
Found at i:8303 original size:169 final size:169
Alignment explanation
Indices: 8007--8332 Score: 377
Period size: 169 Copynumber: 1.9 Consensus size: 169
7997 CAAACACAGT
* * * *
8007 GCATCTATACTAGCAAACACAGTGCATCATCGGATAAATCGAAGCATCTATACTATCACACAAAG
1 GCATCTATACTAGCAAACACAGTGCATCATCGAATAAATCAAAGCATCTATACTAGCAAACAAAG
* * * *** *
8072 TGTACCATCTCATAAATTGAAGCATCTATACGAGAACACATAATGCATTATCTAAAAAACCAAAG
66 TGCACCATCTAAAAAACAAAAGCATCTATACGAGAACACATAATGCATCATCTAAAAAACCAAAG
* *
8137 CATCTATACTAGCACGCACAGTGCATCTAATAAATCGAA
131 CATCTATACTAGCACACACAATGCATCTAATAAATCGAA
* * * *
8176 GCATCTATACTAGCACACATAGTGCCTCATCTAATAAATCAAAGCATCTATACTAGCAAACACAA
1 GCATCTATACTAGCAAACACAGTGCATCATCGAATAAATCAAAGCATCTATACTAGCAAACA-AA
* * * * * * *
8241 -TGCATCATCTAAAAAACAAAAGCATCTATACTAGCACATATAGTGCGTCATC-AGATAAACCAA
65 GTGCACCATCTAAAAAACAAAAGCATCTATACGAGAACACATAATGCATCATCTA-AAAAACCAA
* * *
8304 GGCATTTATTCTAGCACACACAATGCATC
129 AGCATCTATACTAGCACACACAATGCATC
8333 ATCAGGTAAA
Statistics
Matches: 128, Mismatches: 27, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
168 1 0.01
169 125 0.98
170 2 0.02
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (169 bp):
GCATCTATACTAGCAAACACAGTGCATCATCGAATAAATCAAAGCATCTATACTAGCAAACAAAG
TGCACCATCTAAAAAACAAAAGCATCTATACGAGAACACATAATGCATCATCTAAAAAACCAAAG
CATCTATACTAGCACACACAATGCATCTAATAAATCGAA
Found at i:9042 original size:300 final size:300
Alignment explanation
Indices: 8354--9028 Score: 749
Period size: 300 Copynumber: 2.2 Consensus size: 300
8344 TGATACATTC
* * * *
8354 ATATTGGCTCACACAGTGCATCATCGA-TTAAATTGAGGTATCTATACTGCCACACGCAGTACAT
1 ATATTGGCACACACAGTGCATCATCGAGTT-AATCGAGGTATCTATACTGCCACACACAGTGCAT
* * * * * * *
8418 CATCGAGTAAACCGAGACCTCTATACTAGGATACATAGTTTATTATCGGGTACACTGAGGTATCT
65 CATCGAGTAAACAGAGACATCTATACTAGGATACACAGTGTATTATCGGGTAAACAGAGGCATCT
* * * * * *
8483 ATACTGCACACACAGTGCATCATCAGGTAAGTCGAAGCATCTATACTAGCACACATAGTGTCTCA
130 AAACTGCACAAACAGTGCATCATCAAGTAAATCGAAGCATCTATACTAGCACACATAGTATATCA
* * * * * * *
8548 TTGAGTAAACTGAGGCACCAATATTGGCACACATAGTGCATCATCAAGTAAACCGAGAGATTTAT
195 TTGAATAAACTGAAGCACCAATACTGGCACACACAGTACATAATCAAGTAAACCGAGAGATATAT
* * * **
8613 GCTGGCACACATAGTTCATCATCAAGTAAATCGAGGTATCT
260 ACTGGCACACAGAGTTCAACATCAAGTAAATCGAGACATCT
* * * * *
8654 ATATTGGCACACACAGTGCATCATCGAGTAAACCAAAGG-ATCTGTACTGCCACACACAATGCAT
1 ATATTGGCACACACAGTGCATCATCGAGTTAATC-GAGGTATCTATACTGCCACACACAGTGCAT
* *
8718 CATTGGGTAAACAGAGACATCTATACT-GGTATACACAGTGTATCT-TCGGGTAAACAGAGGCAT
65 CATCGAGTAAACAGAGACATCTATACTAGG-ATACACAGTGTAT-TATCGGGTAAACAGAGGCAT
* * **
8781 CTAAACTGGCACAAACAGTG-ATCATCAAGTAAATCGAGGCATCTATACTGGCACATGTAGTATA
128 CTAAACT-GCACAAACAGTGCATCATCAAGTAAATCGAAGCATCTATACTAGCACACATAGTATA
* * * **
8845 TCATAT-AATAAA-TCGAAGCATCTATACTGGCACACACAGTATATAATCTAA-TAAATTGA-AG
192 TCAT-TGAATAAACT-GAAGCACCAATACTGGCACACACAGTACATAATC-AAGTAAACCGAGAG
8906 CATATATACTGGCACACAGAGTGT-AACATCAAGTAAATCGAGACATCT
254 -ATATATACTGGCACACAGAGT-TCAACATCAAGTAAATCGAGACATCT
* * * *
8954 ATATTGGCACACAAAGTACATAATCGAGTTAATCGAGGTATCTATACTGCCATACACAGTGCATC
1 ATATTGGCACACACAGTGCATCATCGAGTTAATCGAGGTATCTATACTGCCACACACAGTGCATC
9019 ATCGAGTAAA
66 ATCGAGTAAA
9029 TTGAGGTATC
Statistics
Matches: 308, Mismatches: 56, Indels: 22
0.80 0.15 0.06
Matches are distributed among these distances:
299 8 0.03
300 280 0.91
301 20 0.06
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (300 bp):
ATATTGGCACACACAGTGCATCATCGAGTTAATCGAGGTATCTATACTGCCACACACAGTGCATC
ATCGAGTAAACAGAGACATCTATACTAGGATACACAGTGTATTATCGGGTAAACAGAGGCATCTA
AACTGCACAAACAGTGCATCATCAAGTAAATCGAAGCATCTATACTAGCACACATAGTATATCAT
TGAATAAACTGAAGCACCAATACTGGCACACACAGTACATAATCAAGTAAACCGAGAGATATATA
CTGGCACACAGAGTTCAACATCAAGTAAATCGAGACATCT
Found at i:9154 original size:41 final size:42
Alignment explanation
Indices: 9072--9155 Score: 100
Period size: 41 Copynumber: 2.0 Consensus size: 42
9062 AAGGTAAGTT
* * *
9072 GAGGCATCTATACTAGTACACACAGTGCATCATTTGATAAATC
1 GAGGCATCTATACTACTA-ACACAGTACATCATTGGATAAATC
*
9115 GAGGCATCTATACTACT-ACACAGTACGAT-ATTGGGTAAATC
1 GAGGCATCTATACTACTAACACAGTAC-ATCATTGGATAAATC
9156 ATAGTGTCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
41 18 0.50
42 2 0.06
43 16 0.44
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (42 bp):
GAGGCATCTATACTACTAACACAGTACATCATTGGATAAATC
Done.