genome.fa.s11591.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011591.1 Kokia drynarioides strain JFW-HI SEQ_126581, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  412326

Tables:   1   2   

This is table  1  of  2  ( 131 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273--301	15	2.0	15	93	6	51	51	0	0	48	1.00
1229--1273	19	2.2	20	84	7	56	68	4	0	26	1.08
16185--16251	27	2.5	27	92	0	116	52	7	14	25	1.68
19083--19134	23	2.2	24	86	3	70	32	3	7	55	1.46
23279--24278	365	2.8	362	84	5	1251	40	20	11	28	1.87
24269--24313	22	2.0	22	100	0	90	64	13	4	17	1.44
27878--28017	70	2.0	70	100	0	280	20	24	25	30	1.99
29505--29874	194	1.9	193	81	3	440	27	25	19	27	1.99
46611--46643	14	2.3	15	89	5	50	36	9	9	45	1.68
47400--47428	13	2.2	13	100	0	58	65	6	0	27	1.18
52969--53059	3	30.3	3	83	4	94	59	5	3	31	1.36
56814--56858	20	2.2	21	88	7	67	73	0	0	26	0.84
74538--74576	17	2.3	17	86	0	51	17	12	23	46	1.83
74566--74661	41	2.3	41	94	3	167	30	6	27	36	1.81
83689--83726	3	12.7	3	100	0	76	34	0	34	31	1.58
86887--86930	23	2.0	22	90	4	70	34	0	0	65	0.93
89680--89756	28	2.8	28	87	0	118	41	3	19	35	1.70
94936--94975	20	2.0	20	100	0	80	10	20	20	50	1.76
94937--94985	20	2.5	20	90	3	73	8	24	16	51	1.71
95323--95348	12	2.2	12	100	0	52	15	38	0	46	1.46
107165--107198	11	3.0	11	91	4	50	23	0	11	64	1.26
107348--107424	38	2.0	38	94	0	136	54	9	15	20	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108260--108301	16	2.8	15	82	10	50	33	2	0	64	1.07
109858--109954	45	2.2	45	92	0	158	43	16	5	35	1.70
110551--110626	11	6.8	11	70	24	52	55	2	1	40	1.22
110551--110626	37	2.1	36	85	11	102	55	2	1	40	1.22
115482--115582	36	2.8	35	89	5	157	21	26	15	35	1.94
119777--119832	24	2.3	24	96	0	103	26	26	19	26	1.99
123528--123571	21	2.2	20	88	12	63	52	4	13	29	1.60
147071--147119	24	2.0	24	84	0	62	36	10	26	26	1.88
151659--152052	45	8.7	45	82	6	431	44	17	4	34	1.70
151676--152037	85	4.0	86	79	9	375	43	17	4	33	1.71
151767--152050	48	6.1	48	83	8	336	45	16	4	33	1.68
151767--152050	91	3.0	94	83	8	373	45	16	4	33	1.68
154420--154466	18	2.5	19	86	3	60	29	21	23	25	1.99
154437--154474	19	2.0	19	94	0	67	34	18	26	21	1.96
155085--155136	21	2.5	21	100	0	104	15	9	30	44	1.78
155192--155249	21	2.8	21	89	0	80	27	15	24	32	1.95
155982--156008	6	4.5	6	100	0	54	66	0	0	33	0.92
156942--157018	31	2.5	31	80	4	84	10	44	25	19	1.83
158381--158823	38	11.4	38	78	8	376	27	18	23	30	1.98
158381--158823	78	5.7	77	77	8	407	27	18	23	30	1.98
158381--158789	194	2.1	195	81	8	487	27	18	24	30	1.98
158383--158821	117	3.8	113	81	6	468	27	18	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161981--162231	123	2.0	123	92	0	412	26	18	17	37	1.93
163210--163315	53	2.0	53	96	0	194	45	3	20	30	1.69
169706--169991	29	9.8	29	77	7	197	39	2	21	36	1.67
169677--169997	117	2.7	117	77	8	267	38	2	22	36	1.68
171817--171857	19	2.2	19	90	0	64	48	2	4	43	1.37
171862--171908	21	2.3	21	85	3	60	42	0	4	53	1.20
185311--185371	30	2.0	30	84	6	79	54	1	24	19	1.54
185294--185610	160	2.0	160	95	0	571	43	5	22	27	1.76
185763--185806	15	3.0	15	80	6	54	70	4	2	22	1.17
187231--187328	21	4.7	22	72	9	89	30	0	21	47	1.51
188450--188666	51	4.3	50	66	14	122	42	4	8	44	1.54
189825--189879	28	2.0	28	88	0	83	32	16	27	23	1.96
191610--191642	11	3.1	11	91	4	50	21	42	0	36	1.53
197200--197239	16	2.4	16	87	4	53	57	0	0	42	0.98
198330--198357	12	2.3	12	100	0	56	14	0	7	78	0.95
198403--198446	15	2.7	15	83	13	52	61	0	0	38	0.96
200414--200449	17	2.1	17	89	0	54	16	27	38	16	1.90
201110--201179	20	3.5	20	88	0	95	31	5	18	44	1.73
203834--203875	10	4.3	10	81	6	50	47	0	4	47	1.23
208572--208627	23	2.4	23	90	0	85	21	17	8	51	1.72
215476--215526	22	2.3	22	89	3	75	21	19	9	49	1.77
237154--237179	11	2.4	11	100	0	52	0	7	0	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237355--237404	20	2.5	20	83	3	57	12	10	8	70	1.35
239223--239400	98	1.8	98	83	2	241	31	28	14	25	1.94
244945--245002	13	4.4	13	77	16	57	34	17	1	46	1.58
244936--245002	27	2.5	26	79	9	73	37	16	1	44	1.57
249431--249524	35	2.7	35	85	3	127	35	12	30	21	1.91
255387--255433	17	2.8	17	96	0	85	57	12	6	23	1.58
262797--262889	35	2.7	35	79	12	102	34	11	32	21	1.90
274227--274265	20	2.0	20	100	0	78	30	15	0	53	1.42
278574--278697	26	5.0	26	77	8	107	62	8	0	27	1.30
278575--278639	20	3.2	20	88	4	94	63	9	1	26	1.34
278597--278696	52	2.0	50	92	4	164	63	9	0	28	1.25
279120--279183	27	2.4	26	79	7	83	26	26	25	21	2.00
281746--281807	31	2.0	31	100	0	124	41	12	16	29	1.85
282937--283030	46	2.0	46	100	0	188	41	18	2	38	1.62
289552--289598	3	16.7	3	82	12	64	72	0	25	2	0.96
289555--289605	6	9.6	5	91	6	59	72	0	25	1	0.95
289653--289701	21	2.4	21	87	12	75	79	0	20	0	0.73
289653--289701	5	9.6	5	87	12	73	79	0	20	0	0.73
291681--292303	148	4.2	148	78	4	662	38	16	25	19	1.92
291661--292328	99	6.8	99	83	1	689	38	16	25	19	1.93
296191--296230	21	2.0	21	85	5	55	37	5	2	55	1.35
296841--296866	7	3.7	7	100	0	52	15	26	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299775--299799	11	2.3	11	100	0	50	64	8	8	20	1.46
301758--301786	10	2.9	10	100	0	58	41	17	0	41	1.49
306665--306703	19	1.9	19	85	10	51	38	10	0	51	1.36
310800--310843	21	2.1	21	86	0	61	52	15	6	25	1.68
312692--312724	17	1.9	17	93	0	57	51	3	0	45	1.16
312694--312732	17	2.3	17	86	0	51	56	2	2	38	1.27
313517--313618	51	2.0	51	96	0	186	35	11	7	45	1.70
319090--319129	14	2.9	13	85	10	53	37	7	7	47	1.60
319092--319129	13	2.7	14	84	8	51	39	5	7	47	1.55
321997--322370	59	6.4	57	76	14	284	41	2	23	31	1.69
322100--322377	30	9.4	29	63	21	96	41	2	23	32	1.68
322090--322369	58	4.8	58	76	15	247	42	2	23	31	1.66
323400--323439	18	2.2	18	90	4	62	42	0	0	57	0.98
324250--324348	6	17.2	6	70	22	70	52	2	1	44	1.19
324251--324320	23	3.0	23	82	14	65	50	1	1	47	1.19
324250--324348	11	8.6	12	70	22	70	52	2	1	44	1.19
324270--324348	17	4.6	17	85	3	104	54	2	1	41	1.22
324250--324350	29	3.5	29	74	16	86	52	1	0	44	1.19
325077--325173	50	1.9	50	93	0	167	25	12	27	34	1.92
328162--328249	29	3.0	30	77	11	83	31	5	23	38	1.78
328195--328258	29	2.2	28	78	8	74	31	7	20	40	1.81
328269--328426	56	2.7	57	83	5	201	36	2	28	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328252--328426	30	6.0	29	80	11	180	36	2	27	34	1.70
329490--329565	3	25.0	3	91	2	125	35	0	0	64	0.94
331720--331749	15	2.0	15	93	0	51	56	0	0	43	0.99
337469--337503	4	8.8	4	100	0	70	51	0	22	25	1.48
341154--341198	21	2.0	22	83	12	56	22	22	0	55	1.44
344223--344285	19	3.4	18	72	16	58	41	0	3	55	1.16
344223--344309	20	4.6	20	72	12	58	41	1	5	51	1.33
344223--344294	25	2.9	24	78	15	67	41	0	5	52	1.24
346996--347030	18	1.9	18	88	0	52	57	8	28	5	1.52
355495--355533	14	2.7	14	84	4	51	33	7	7	51	1.59

Tables:   1   2