genome.fa.s11592.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011592.1 Kokia drynarioides strain JFW-HI SEQ_126582, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190359

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248--313	17	3.9	17	76	7	62	50	13	16	19	1.78
248--313	34	1.9	34	82	11	82	50	13	16	19	1.78
676--714	18	2.2	18	100	0	78	15	33	23	28	1.95
3987--4474	242	2.0	242	99	0	958	44	6	14	34	1.71
5208--5246	6	6.5	6	87	0	51	46	0	30	23	1.53
14711--14768	27	2.2	25	84	12	71	36	17	1	44	1.59
17108--17806	146	4.8	145	88	3	976	43	10	3	43	1.53
18243--18302	3	20.0	3	82	0	57	65	0	10	25	1.24
24935--25148	56	3.8	55	83	4	250	32	16	25	25	1.96
25258--25413	29	5.4	29	78	6	163	17	10	25	47	1.79
25271--25413	58	2.5	58	82	4	191	16	9	25	48	1.75
39816--40295	158	3.0	158	82	3	547	26	22	21	29	1.99
44140--44322	41	4.4	41	89	0	249	27	26	9	37	1.87
55285--55332	21	2.3	21	85	7	62	64	0	33	2	1.05
56383--56413	16	1.9	16	100	0	62	80	0	19	0	0.71
63362--63841	158	3.0	158	87	0	674	24	22	23	29	1.99
66276--66342	34	2.0	34	96	0	125	47	4	25	22	1.70
71352--71395	2	22.0	2	85	0	61	4	2	45	47	1.35
72577--72615	19	2.1	19	95	0	69	28	30	0	41	1.57
72667--72746	39	2.1	39	82	15	96	35	7	3	53	1.47
76781--76875	40	2.4	40	91	3	147	50	4	21	24	1.66
77600--77652	26	2.0	26	85	7	72	47	3	20	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77614--77652	13	3.0	13	80	0	51	46	5	20	28	1.72
79302--79354	14	3.7	14	80	5	61	49	3	5	41	1.44
79299--79350	15	3.5	15	78	5	61	46	3	3	46	1.39
106755--106792	21	1.9	21	89	10	62	50	0	0	50	1.00
107933--108080	70	2.1	71	87	5	212	33	12	12	41	1.82
112277--112336	31	1.9	32	93	3	104	43	10	8	38	1.68
112944--112984	19	2.1	20	86	13	59	41	2	0	56	1.13
123125--123155	15	2.0	16	93	6	55	45	0	3	51	1.17
125520--125675	30	5.2	31	74	6	128	33	6	20	39	1.78
127280--127568	39	7.3	39	75	8	253	24	16	26	32	1.96
127281--127567	79	3.6	79	86	1	405	24	16	26	32	1.96
127625--127722	50	1.9	51	91	2	162	21	24	19	34	1.96
139303--139486	30	6.2	30	74	6	135	34	5	21	38	1.78
139316--139398	29	2.8	30	81	7	89	37	6	22	33	1.79
139310--139456	59	2.5	59	79	10	165	35	6	23	35	1.80
145615--145948	49	6.8	49	85	1	303	20	25	14	40	1.89
145634--145998	98	3.7	97	82	3	351	20	23	14	40	1.90
145615--145997	147	2.6	147	80	5	375	20	24	14	40	1.90
145634--145998	49	7.5	48	83	6	297	20	23	14	40	1.90
146058--146226	83	2.0	83	95	0	302	30	17	22	28	1.97
159711--159755	20	2.2	21	84	11	58	2	13	15	68	1.30
162187--162255	25	2.8	25	76	8	77	37	13	17	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162149--162226	35	2.2	35	84	4	95	34	7	19	38	1.80
168771--168809	7	5.4	7	85	14	53	58	2	0	38	1.12
172774--172822	25	2.0	25	91	0	80	51	12	20	16	1.76
178424--178471	25	1.9	25	83	8	62	37	18	16	27	1.92
180678--180749	31	2.4	30	80	13	85	38	11	8	41	1.71
183004--183046	15	2.7	16	82	10	52	69	0	9	20	1.15
184197--184236	21	1.9	21	84	0	53	32	17	17	32	1.93
189184--189267	26	3.2	26	76	6	89	25	26	20	28	1.99
190192--190271	23	3.5	22	84	3	97	38	28	20	12	1.89
190260--190359	23	4.3	23	91	7	143	41	23	26	10	1.85

Tables:   1

The End!