Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011593.1 Kokia drynarioides strain JFW-HI SEQ_126583, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31


Found at i:1729 original size:26 final size:26

Alignment explanation


    Indices: 1693--1748  Score: 112
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1683 CTTCTTGTTT

                                      
       1693 GAAACAGTTTATAGAAATGATAAAAA
          1 GAAACAGTTTATAGAAATGATAAAAA

                                      
       1719 GAAACAGTTTATAGAAATGATAAAAA
          1 GAAACAGTTTATAGAAATGATAAAAA

                
       1745 GAAA
          1 GAAA

       1749 ATCCCAATTC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   30  1.00

ACGTcount: A:0.59, C:0.04, G:0.16, T:0.21


Consensus pattern (26 bp):   
GAAACAGTTTATAGAAATGATAAAAA
Done.