Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011595.1 Kokia drynarioides strain JFW-HI SEQ_126585, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2752
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33


Found at i:2026 original size:18 final size:18

Alignment explanation


    Indices: 1952--2033  Score: 85
    Period size: 18  Copynumber: 4.6  Consensus size: 18

       1942 CCATACTCCC

                              
       1952 TTTAAATTTATTTTAAAA
          1 TTTAAATTTATTTTAAAA

            *        *   *    
       1970 ATTAAATTTGTTTAAAAA
          1 TTTAAATTTATTTTAAAA

                      *      *
       1988 TTTAAATTTAATTT-AAG
          1 TTTAAATTTATTTTAAAA

                  *       *   
       2005 TTTAAAATTATTTTCAAA
          1 TTTAAATTTATTTTAAAA

                       
       2023 TTTAAAGTTTA
          1 TTTAAA-TTTA

       2034 AAATAAATAG


Statistics
Matches: 50,  Mismatches: 12, Indels: 3
        0.77            0.18        0.05

Matches are distributed among these distances:
  17   14  0.28
  18   33  0.66
  19    3  0.06

ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51


Consensus pattern (18 bp):   
TTTAAATTTATTTTAAAA
Done.