Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001160.1 Kokia drynarioides strain JFW-HI SEQ_112477, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2561
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36


Found at i:1719 original size:19 final size:20

Alignment explanation


    Indices: 1676--1721  Score: 53
    Period size: 19  Copynumber: 2.5  Consensus size: 20

       1666 ATTACAAAAA

                                
       1676 ATAAAAA-TAAAAATAGTTT
          1 ATAAAAATTAAAAATAGTTT

              *      *          
       1695 -TTAAAATTCAAAATA-TTT
          1 ATAAAAATTAAAAATAGTTT

                     
       1713 ATAAAAATT
          1 ATAAAAATT

       1722 TCTAAATTTA


Statistics
Matches: 22,  Mismatches: 3, Indels: 4
        0.76            0.10        0.14

Matches are distributed among these distances:
  18    8  0.36
  19   14  0.64

ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37


Consensus pattern (20 bp):   
ATAAAAATTAAAAATAGTTT

Found at i:1768 original size:34 final size:34

Alignment explanation


    Indices: 1704--1768  Score: 85
    Period size: 34  Copynumber: 1.9  Consensus size: 34

       1694 TTTAAAATTC

                *           *       **        
       1704 AAAATATTTATAAAAATTTCTAAATTTATATTTT
          1 AAAAAATTTATAAAAAATTCTAAAAATATATTTT

                     *                     
       1738 AAAAAATTTGTAAAAAATTCTAAAAATATAT
          1 AAAAAATTTATAAAAAATTCTAAAAATATAT

       1769 ATAAAAAGTT


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  34   26  1.00

ACGTcount: A:0.54, C:0.03, G:0.02, T:0.42


Consensus pattern (34 bp):   
AAAAAATTTATAAAAAATTCTAAAAATATATTTT
Done.