genome.fa.s11600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011600.1 Kokia drynarioides strain JFW-HI SEQ_126590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  270200

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4773--4821	17	2.8	17	93	6	80	65	0	34	0	0.93
5082--5216	71	1.9	71	100	0	270	32	0	20	47	1.50
17771--17825	26	2.1	26	86	0	74	34	29	9	27	1.87
22756--22805	15	3.2	16	77	11	50	74	6	2	18	1.12
24500--24821	50	6.5	50	75	5	222	20	18	18	42	1.90
24503--24791	100	2.9	101	78	4	291	21	16	18	43	1.88
24501--24772	150	1.8	150	79	4	316	21	16	18	43	1.88
28173--28332	82	2.0	82	88	2	241	28	14	25	32	1.94
46908--46934	11	2.5	11	100	0	54	70	0	0	29	0.88
55484--55554	28	2.5	28	100	0	142	28	21	23	26	1.99
56274--56313	21	1.9	21	89	0	62	27	12	20	40	1.88
59838--59871	7	4.9	7	92	0	59	17	0	41	41	1.50
61299--61340	16	2.5	17	80	3	50	71	4	0	23	1.05
64359--64468	46	2.4	46	82	0	130	27	15	15	41	1.87
67525--67602	26	3.0	26	98	0	147	23	21	23	32	1.98
68047--68086	21	1.9	21	85	10	55	40	0	15	45	1.46
71261--71769	24	21.2	24	82	0	525	27	23	17	30	1.97
74012--74088	37	2.1	37	85	2	100	31	29	20	18	1.96
79854--80108	24	10.5	24	78	9	223	27	25	16	30	1.96
79869--80122	47	5.2	48	79	7	187	30	25	14	29	1.95
79882--80121	71	3.3	71	84	2	291	29	25	15	29	1.96
79995--80124	24	5.5	24	85	1	163	32	25	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81263--81495	80	2.9	80	83	4	272	24	16	26	32	1.96
81517--81577	25	2.4	25	91	0	95	26	19	26	27	1.99
85881--85923	16	2.7	15	79	10	50	51	4	0	44	1.22
86890--86922	17	1.9	17	88	11	50	30	12	27	30	1.92
89456--89493	17	2.3	16	86	13	51	63	5	13	18	1.48
110905--111062	57	2.8	57	86	6	214	44	1	1	53	1.16
111229--111273	16	2.8	16	86	0	63	24	17	8	48	1.75
112896--112932	18	2.1	18	100	0	74	48	18	10	21	1.78
117471--117535	31	2.1	31	94	2	114	30	18	12	38	1.88
118893--118958	28	2.5	26	86	11	82	78	0	6	15	0.93
147608--147640	17	2.0	17	88	5	50	45	0	0	54	0.99
147686--147813	58	2.2	59	79	12	140	42	3	5	47	1.45
152982--153070	31	2.9	31	87	0	133	38	19	14	28	1.91
154898--155097	38	5.3	38	81	2	222	17	20	27	34	1.95
163413--163468	17	3.0	18	72	23	53	3	14	1	80	0.93
164189--164223	3	11.7	3	100	0	70	0	31	0	68	0.90
168640--168683	23	2.0	22	86	4	61	38	0	15	45	1.47
174767--174827	22	2.8	22	78	9	70	21	24	22	31	1.98
174756--174839	33	2.5	33	83	7	100	22	27	22	27	1.99
174820--174863	18	2.4	18	84	0	61	22	31	20	25	1.98
174829--174864	18	2.0	18	94	0	63	19	33	25	22	1.97
174830--174883	14	4.1	14	74	13	60	20	29	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180876--180912	19	1.9	19	100	0	74	16	45	10	27	1.80
188308--188633	52	6.2	52	89	0	445	30	24	15	29	1.95
189495--189536	20	2.1	20	91	8	68	33	23	0	42	1.55
195781--196124	52	6.7	52	82	3	356	29	14	22	32	1.94
195795--196139	102	3.4	103	76	8	251	30	15	23	31	1.95
200973--201029	25	2.2	25	79	14	64	31	1	31	35	1.68
201556--201596	12	3.5	12	83	3	57	75	0	7	17	1.02
201556--201596	17	2.4	17	88	12	57	75	0	7	17	1.02
203917--204033	55	2.1	55	90	0	180	37	22	17	22	1.94
203948--204061	27	4.2	27	76	2	111	39	21	15	22	1.92
208276--208303	7	4.0	7	100	0	56	28	28	0	42	1.56
210788--210862	24	3.1	24	90	0	114	53	9	13	24	1.68
212803--212853	24	2.1	24	92	0	84	54	11	11	21	1.68
216928--216968	14	2.9	14	96	0	73	43	4	4	46	1.46
228137--228175	18	2.2	18	86	9	53	46	0	2	51	1.14
228275--228308	18	1.9	17	88	5	50	47	2	0	50	1.16
229860--229900	20	2.0	21	86	13	59	63	0	4	31	1.15
229888--229929	20	2.0	20	86	4	57	61	0	4	33	1.17
253355--253401	19	2.5	19	77	19	53	74	2	6	17	1.12
254282--254332	17	2.9	17	82	8	50	41	5	3	49	1.45

Tables:   1

The End!