Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011602.1 Kokia drynarioides strain JFW-HI SEQ_126592, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8981
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.28
Warning! 79 characters in sequence are not A, C, G, or T
Found at i:523 original size:216 final size:215
Alignment explanation
Indices: 1--1231 Score: 1337
Period size: 216 Copynumber: 5.7 Consensus size: 215
1 TCGTAAAAGTTTTG-CAA-TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
1 TCGTAAAAG-TTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
*
64 ATAAGTTTTTAATTCAAAGACC-AAATTTTGTTCACAAAATGAGAAACTATTTAGACCAAATGAT
65 ATAAGTTTTTAATTCAAAGACCAAAATTTT-TT-ACAAAATGACAAACTATTTAGACCAAATGAT
** * * * * * * * * *
128 TTGATTTCCCGAGCATGAAATGTTCGGAAATTTGCTCTAAGCAATGGATCTTGTTGAATACTTTT
128 GCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTA
* * *
193 GGGAACCGAAGTTAAAAAATAAC
193 AGGAACCGAAGTTATAAAAGAAC
* *
216 TTGTAAAAGTTTTACAA-TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
1 TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * *
280 TAAGTTTTTAATTCAAAGACCAAAACTTTTTTGCAAAATGACAAACTAGTTAAACCAAATGATGC
66 TAAGTTTTTAATTCAAAGACCAAAA-TTTTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * *
345 GATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAACGAATGGAGCGTCTAGAATACTTTAAG
130 GATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
*** *
410 GAATTTAAGTTATAAAAGATC
195 GAACCGAAGTTATAAAAGAAC
* ** * * * * * * * * *
431 TCTTCGAAGTTAGAAAAGTTCGATAGATCGTCCATGAACCAAGAGAGAGACATTTCTCTCGTAAA
1 TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * * * * **
496 TAAGTATTTAATTCAATGACTAAAACTTGTTTACAAAATGACAAACTAGTTAGAYTAAATGATGC
66 TAAGTTTTTAATTCAAAGACCAAAA-TTTTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * * ** * * * * *
561 GATTTCYCGAGCATSGAATGYTYGRAAAATTGYTTTAAGGATTGGATCTTGTTGAATACTGTAGG
130 GATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* *
626 GAACCGAAGTTAAAAAAAAAC
195 GAACCGAAGTTATAAAAGAAC
* * * *
647 TCGTAAAAGTTTGCCAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGGAACAATTCTCACGTGAA
1 TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * *
712 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAAAGTCAAACTATTTAGACCAAATGATG
66 TAAGTTTTTAATTCAAAGACCAAAA-TT-TTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * *
776 AGATTTGTCGAGCATGGTATGTTCGAAAAATTACTCGAAGGAATGGGTCATCTTGAATACTTTAA
129 CGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
*** *
841 GGAAGTTAAGTTATAAAAGATC
194 GGAACCGAAGTTATAAAAGAAC
* ** * * * * * * *
863 TCCTCGAAGTTAGACAAGTTCGATAGATCGTCCATGAACCAAGAGAGAGACAATTCTCA-GATGA
1 TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG-TAA
* * *
927 ATAAGTTTATAATTCAAAGACC-AAATTTGTTTGCAAAAAGACAAACTATTTAGACCAAATGATG
65 ATAAGTTTTTAATTCAAAGACCAAAATTT-TTTACAAAATGACAAACTATTTAGACCAAATGATG
*
991 CGATTT-TCCGAGCATGGAATGTTC-AGAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTT
129 CGATTTCT-CGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
* * * *
1054 ATGGATCCGAAGTTATAAAATACC
192 AAGGAACCGAAGTTATAAAAGAAC
* * * * *
1078 TAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAAGAAAGAGAGAAATAATTCTCATGTAAA
1 TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* **
1143 TAAGTTTTTAATTCAAAGACCAAAATTTGTTCACAAAATGACAAACTATTTAGACCAAATGATTT
66 TAAGTTTTTAATTCAAAGACCAAAATTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGC
*
1208 GATTTCCCGAGCATGGAATGTTCG
130 GATTTCTCGAGCATGGAATGTTCG
1232 GAAATTTGNN
Statistics
Matches: 830, Mismatches: 172, Indels: 26
0.81 0.17 0.03
Matches are distributed among these distances:
213 1 0.00
214 9 0.01
215 355 0.43
216 458 0.55
217 7 0.01
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (215 bp):
TCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
TAAGTTTTTAATTCAAAGACCAAAATTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
ATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
AACCGAAGTTATAAAAGAAC
Found at i:836 original size:432 final size:431
Alignment explanation
Indices: 1--7599 Score: 7733
Period size: 432 Copynumber: 17.7 Consensus size: 431
1 TCGTAAAAGTTTTG-CAA-TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
1 TCGTAAAAG-TTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
** * * *
64 ATAAGTTTTTAATTCAAAGACCAAATTTTGTTCACAAAATGAGAAACTATTTAGACCAAATGATT
64 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * *
129 TGATTTCCCGAGCATGAAATGTTCGGAAATTTGCTCTAAGCAATGGATCTTGTTGAATACTTTTG
129 CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAG
* * *
194 GGAACCGAAGTTAAAAAATAACTTGTAAAAGTTTTACAA-TTCGAAAGTTCGTCCAAGAACAAAG
194 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAG
* *
258 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTTTTTGCAAAATGACA
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACA
* * * * *
323 AACTAGTTAAACCAAATGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAACGAAT
324 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * ** *
388 GGAGCGTCTAGAATACTTTAAGGAATTTAAGTTATAAAAGATC
389 GGATCTTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
* ** * * * * * * * *
431 TCTTCGAAGTTAGAAAAGTTCGATAGATCGTCCATGAACCAAGAGAGAGACATTTCTCTCGTAAA
1 TCGTAAAAGTTTGACAAGTTCGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * * * **
496 TAAGTATTTAATTCAATGACTAAAACTTGTTTACAAAATGACAAACTAGTTAGAYTAAATGATGC
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * * * * * *
561 GATTTCYCGAGCATSGAATGYTYGRAAAATTGYTTTAAGGATTGGATCTTGTTGAATACTGTAGG
130 GATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAGG
* *
626 GAACCGAAGTTAAAAAAAAACTCGTAAAAGTTTGCCAAGTTCGGAAGTTCGTCCAAGAACAAAGA
195 GAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGA
* * * *
691 GAGGAACAATTCTCACGTGAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAAAGTCAA
260 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAA
* ** * *
756 ACTATTTAGACCAAATGATGAGATTTGTCGAGCATGGTATGTTCGAAAAATTACTCGAAGGAATG
325 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * * *
821 GGTCATCTTGAATACTTTAAGGAAGT-TAAGTTATAAAAGATC
390 GATCTTCTTGAATACTTTAAGGAA-TCGAAGTTATAAAAGAAC
* ** * * * * * *
863 TCCTCGAAGTTAGACAAGTTCGATAGATCGTCCATGAACCAAGAGAGAGACAATTCTCA-GATGA
1 TCGTAAAAGTTTGACAAGTTCGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG-TAA
* * * *
927 ATAAGTTTATAATTCAAAGACC-AAATTTGTTTGCAAAAAGACAAACTATTTAGACCAAATGATG
64 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * *
991 CGATTTTCCGAGCATGGAATGTTCAGAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTAT
129 CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAG
* * * * * * *
1056 GGATCCGAAGTTATAAAATACCTAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAAGAAAG
194 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAG
* * * *
1121 AGAGAAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAATTTG-TTCACAAAATGAC
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGAC
** * * *********
1185 AAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGGAAATTTG-NNNNNNNNN
323 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
********************************************
1249 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
388 TGGATCTTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
*******************
1293 NNNNNNNNNNNNNNNNNNNTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
1 TCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* *
1358 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAAACCAAATGATGC
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * * *
1423 GATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAACGAATGGATCGTCTAGAATACTTT---
130 GATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAGG
* * * * *
1485 -AA-GGAAG-T------T-A---G-AAAAG-TT--C--GAT----AGATCGTCCATGAACCAAGA
195 GAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGA
* * * * * *
1527 GAGAGACATTTCTCTCGTAAATAAGTATTTAATTCAATGACTAAAACTTGTTT-ACAAAATGACA
260 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACA
* * * * ** *
1591 AACTAGTTAGACTAAATGATGCGATTTCCCGAGCATCGAATGTTCGAAAAATTGTTTTAAGGATT
324 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * *
1656 GGATCTTGTTGAATACTGTAGGGAACCGAAGTTA-AAAAAAAC
389 GGATCTTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
* * *
1698 TCGTAAAAGTTTGCCAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGGAACAATTCTCACGTGAA
1 TCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* *
1763 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAAAGACAAACTATTTTGACCAAATGATG
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATG
* ** * * * * *
1827 AGATTTGTCGAGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGGTCATCTTGAATACTTTAA
129 CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAG
*** * * * *
1892 GGAAGTTAAGTTATAAAAGATCTACTCG---AAGTTAGACAAGTTC-GATAGATCGTCCATGAAC
194 GGAACCGAAGTTA-AAAA-AT-AACTCGTAAAAGTTTGACAAGTTCGGA-AGTTCGTCCAAGAAC
* * * * *
1953 CAAGATAGAGACAATTCTCA-GATGAATAAGTTTTTAATTCAAAGACC-AAATTTGTTTGCAAAA
255 AAAGAGAGAAACAATTCTCACG-TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTG-AAAA
* *
2016 A-GACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATGTTC-AGAAAATTTCTCG
318 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCG
* * *
2079 AAGGAATGGATCGTCTTGAATACTTTATGG-ATCCGAAGTTATAAAA-TAC
382 AAGGAATGGATCTTCTTGAATACTTTAAGGAAT-CGAAGTTATAAAAGAAC
* * * * *
2128 CCAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAAGAAAGAGAGAAATAATTCTCAAGTAA
1 TC-GTAAAAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
* * * *
2193 ATAAGTTTTTAATTCAAAGACCAAAATTTGTTCACAAAATAACAAACTATTTAGACCAAATGATT
64 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * *
2258 TGATTTCCCGAGCATGGAATGTTCGGAAATTTGCTTTAAGGAATGGATCTTGTTGAATACTTTTG
129 CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAG
* *
2323 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTTACAA-TTCGAAAGTTCGTCCAAGAACAAAG
194 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAG
* *
2387 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGAAA
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACA
* * * *
2452 AACTATTTAAACCAAATGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAACGAAT
324 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * *
2517 GGATCGTCTTGAATACTTTAAGGAAGT-TAAGTTATAAAAGATC
389 GGATCTTCTTGAATACTTTAAGGAA-TCGAAGTTATAAAAGAAC
* ** * * * * * * * *
2560 TCTTCGAAGTTAGAAAAGTTCGATAGATCGTCCATGAACCAAGAGAGAGACATTTCTCTCGTAAA
1 TCGTAAAAGTTTGACAAGTTCGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * * * **
2625 TAAGTATTTAATTCAATGACTAAAACTTGTTTACAAAATGACAAACTAGTTAGATTAAATGATGC
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * *
2690 GATTTCTCGAGCATGGAATGCTT-GGAAAATTGCTTTAAGGATTGGATCTTGTTGAATACTATAG
130 GATTTCCCGAGCATGGAATG-TTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAG
*
2754 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGCCAAGTTCGGAAGTTCGTCCAAGAACAAAG
194 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAG
* * * * *
2819 AGAGGAACAATTCTCACGTGAATAAGTTTTTAATTCAAAGATCGAAACTTGTTTGCAGAGAA-GA
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTG-A-AAAATGA
** *
2883 CAAACTATTTAGACCAAATGATGCGATTTCCAAAGCATGGAATGTTCGAAAAATTGTTCGGAA-G
322 CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-GAAGG
* *
2947 AATAGATCTTCTTGAATACTTTAAGG-ATCCGATGTTATAAAAGAAC
386 AATGGATCTTCTTGAATACTTTAAGGAAT-CGAAGTTATAAAAGAAC
* *
2993 TAGTAAAAGTTTGACAAGTTCAGAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
1 TCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * * * *
3058 TAAGTATTTAATTCAAGGAACAAAACTTGTTTACAAATTGACAAACTATTTAGACCAAATGATGT
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * * *
3123 GATTTCCCGAGCTTGGAGTGTTCGAAAAAATAGCTCTAAGAAATGGATCTTGTTGAATACTTTTG
130 GATTTCCCGAGCATGGAATGTTCG-GAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAG
* * * *
3188 AGAACCGAAGTTAACAAATAACTCGTAAAAGTTTTG-CAA-TTCGAAAGTTCATCCAAGAACAAA
194 GGAACCGAAGTTAAAAAATAACTCGTAAAAG-TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAA
* *
3251 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAAATCAAAGACCAAAACTTGTTTGCAAAATGAC
258 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGAC
* * **
3316 AAACTATTTAGACCAAACGATGCGATTTCCCGCA-CATGTAATGTTCGAAAAATTGCTTTAAGGA
323 AAACTATTTAGACCAAATGATGCGATTTCCCG-AGCATGGAATGTTCGAAAAATTGCTCGAAGGA
* * * * * * * *
3380 TTGGATCTTATTGAATACTGT-AGGGACCCAGAGTTAAAAAATAAC
387 ATGGATCTTCTTGAATACTTTAAGGAATCGA-AGTTATAAAAGAAC
* * *
3425 TCGTAAAAGTTTG-C-----C-AAGTTCATCCAAGAATAAAGAGAGAAACAATTCTCACGTGAAT
1 TCGTAAAAGTTTGACAAGTTCGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAT
* *
3483 AAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAAAGACAAACTATTTTGACCAAATGATGC
66 AAGTTTTTAATTCAAAGACCAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGC
** * * * * *
3547 GATTTGTCGAGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCATCTTGAATACTTCAAG
130 GATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAGG
*** * * * * ** * * * * *
3612 GAAGTTAAGTTATAAAAGATCTCCTCGAAGTTAGACAAGTT-TGATAGATCGTCCATGAACCAAG
195 GAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGA-AGTTCGTCCAAGAACAAAG
* * * * *
3676 AGAGAGACAATTCTCTCGTAAATAAGTATTTAATTCAATGACTAAAACTTGTTT-ACAAAATGAC
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGAC
* * * ** *
3740 AAACTAGTTAGACTAAATGATGCGATTT--C---C-----ATGCTCGAAAAATTGCTTTAAGGAT
323 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * * *
3795 TGGATCTTGTTGAATACTGTAGGGAACCAAAGTTA-ACAAATAAC
388 TGGATCTTCTTGAATACTTTAAGGAATCGAAGTTATA-AAAGAAC
* * * *
3839 TCGTAAAAGTTTGGA-AAGTTCGGAAGTTCGTCCAAGGACAAAGAGAGAAATAATTCTCACATGA
1 TCGTAAAAGTTT-GACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
* * *
3903 ATAAGTTTTTAATTCAAAGACTAAAACTTGTTTGCAAAAAGACAAACTATTTAGACCAAATGATG
64 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * * *
3968 CGATTTGCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCCTGAATACTTTAT
129 CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAG
* * * * * *
4033 GGATCCGAAGTTATAAAAGACCTAGTAAAAGTTTGACAAGTTCGGAAGTTTGTCCAAGAACAAAG
194 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAG
* * *
4098 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTGCAAAATGAAA
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACA
* * * * * * *
4163 AACTATTTAGACCAAACGATGCGATTTCCTGTGCATGGAATGTTC-AGAAATTTTCTCTAAGGAT
324 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA
* * * *
4227 TGGATCTTGTTGAATACTTTAGGGAATCGAAGTTAGAAAATAAC
388 TGGATCTTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
* * * *
4271 TCGTAAAAGTTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGATACAATTCTCAGGTAAA
1 TCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * *
4336 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGAAAAACTATTTAGACCAAACGATGC
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * * * *
4401 GATTTCCTGTGCATGGAATGTTCAGAAATTTTCTCTAAGGATTGGATCTTGTTGAATACTGTAGG
130 GATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAGG
* * *
4466 GAACCAAAGTTAAAAAATAACTCGTTAAAGTTTGGCAAGTTCGGAAGTTCGTCCAAGAACAAAGA
195 GAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGA
* * * * *
4531 GAGAAATAATTCTCACATGAATAAGGTTTTAATTCAAAGACCAAAACTTGTTTGAAAAAAGACAA
260 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAA
** *
4596 ACTATTTAGACCAAATGATGCGATTTGACGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATG
325 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * *
4661 GATCGTCTTGAATACTTTATGG-ATCCGAAGTTATAAAAGACC
390 GATCTTCTTGAATACTTTAAGGAAT-CGAAGTTATAAAAGAAC
* * *
4703 TAGTGAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
1 TCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* **
4768 TAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTT
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * *
4833 GATTTCCCGAGCATGGAATGTTCGGAAATTTGCTCTAAGGAATGGATCTTGTTGAATACTTTACG
130 GATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAGG
* * * * * * *
4898 GAGCCAAAGTTAAAAAATAGCTCGTAAAATTTTGACAAGTTTGAAAGTTCGTCCAAAAAACAAAG
195 GAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AAGAACAAAG
* * * * *
4963 AGAGAAACAATTCTCACATAAATAAATTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATA
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACA
* * * * *
5028 AACAATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTG-TACGAAAGAA
324 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT-CGAAGGAA
* * * *
5092 TAGATCGTCTTGAATACTTTAAGGATTCGATGTTATAAAAGAAC
388 TGGATCTTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
* * * * *
5136 TAGTAAAAGTTCGACAAGTTCGGAAGTTCGTCAAAGAACGAAGATAGAAACAATTCTCACGTAAA
1 TCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * * * * **
5201 TAAGTTTTTAAATCAAAGACCAAAATTTGTTTACAAAAAGACAAACTCTTTGGACCAAATGATTT
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * *
5266 GATTTCACGAGCATGGAATGTTCAGAAATTTTCTCTAAGGAATGGATCTTGTTGAGTACTTTA-G
130 GATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAGG
* ** * * * * *
5330 G-A---AA-TT-----TTCTCACGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCATGATCAAAGA
195 GAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGA
* * * *
5385 GAGAAACAATTCTCACGTAAATAATTTTTTAATTCAAAGACCAATACTTGTTCGCAAAATGACAA
260 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAA
* * * *
5450 ACTATTTAGACCAAATGATGTGATTTCACAAGCATGGAATGTTCGAAAAATTGTTCGGAA-GAAT
325 ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-GAAGGAAT
* * *
5514 AGATCGTCTTGAATACTTTAAGG-ATCCGATGTTATAAAAGAAC
389 GGATCTTCTTGAATACTTTAAGGAAT-CGAAGTTATAAAAGAAC
* * *
5557 TAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAACAACAAAGAGAGAAACAATTCTCACGTAAA
1 TCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * * * *
5622 TAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGC
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* ** * * * * * *
5687 GATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAG
130 GATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAGG
* * * * * * * *
5752 GATCC-AATGGTATAAAAGAACTAGTAAAAGTTTTACAAGTTCGGAAGTTCATCAAAGAACAAAG
195 GAACCGAA-GTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAG
* * *
5816 AGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAATTTGTTT-ACAAAATGAC
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGAC
** * * *
5880 AAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTC-AGAAATTTTCTCTAAGGA
323 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGA
* * ** * * * *
5944 ATGGATCTTGTTGAATACTTTACGGAGCCAAAGTTAAAAAATAGC
387 ATGGATCTTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
* * * *
5989 TCGTAAAATTTTGACATGTTTGAAAGTTCGTCCAGAAAACAAAGAGAGAAACAATTCTCACGTAA
1 TCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCCA-AGAACAAAGAGAGAAACAATTCTCACGTAA
* * * * *
6054 ATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAACAATTTTGACCAAATGATG
64 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* ** * * * * * * *
6119 CGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAACACTTTAA
129 CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAG
* * * * * * *
6184 GGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGGTCGGAAGTTCGTCAAAGAACAAAG
194 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAG
* *** * * *
6249 AGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTTGCAGACAAAAATTTGTTT-ACAAAGTGAC
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGAC
** * * *
6313 AAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGAAAATTTTCTCTAAGGAA
323 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * * *
6378 TGGATCTTGTTGAATACTTTACGG-ATCCAAAGTTAAAAAATAGC
388 TGGATCTTCTTGAATACTTTAAGGAAT-CGAAGTTATAAAAGAAC
* * * * * **
6422 TCGTAAAATTTTGACATGTTTGAAAGTTCATCCAGAAAACAAAGAGAGAAACAATTCTCTTGTAA
1 TCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCCA-AGAACAAAGAGAGAAACAATTCTCACGTAA
* *
6487 ATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATT
64 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * *
6552 TGATTTCCCGAGCATGGAATGTTCAGAAATTTTCTCTAAGGAATGGATCTTATTGAATACTTGAG
129 CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAG
* * * * * *
6617 GGAACTGAAGTTAAAAAATAATTTGTAAAAGTTTGACAAGTTTGAAAGTTTGTCCAAGAACAAAG
194 GGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAG
* * * *
6682 AGAGAAACAATTCTTACGTAAATAAGTTTTTAATTCAAAGACCCAAACTTGTTTGCAAAATGATA
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACA
* * *
6747 AACTATTTAGACCAAATGATGCGATTTCACAAGCATGGAATGTTCGAAAAATTGTTCCGAA-GAA
324 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCT-CGAAGGAA
* * * * *
6811 TAGATCATCTTGAATACTTTAA-GTATCCGATGTTATATAAGAAC
388 TGGATCTTCTTGAATACTTTAAGGAAT-CGAAGTTATAAAAGAAC
* * * *
6855 TAGTAAAAGTTTGAGAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAAAAATTCTCACGTAAA
1 TCGTAAAAGTTTGACAAG-TTCGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA
* * *
6920 TAAGTATTTAATTCAAAGAACAAAACTTGTTTACAAAATGACAAATTATTTAGACCAAATGATGC
65 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * * * *
6985 GATTTGCCGAGCATGGAATGTTCGGAAAATTGTTCGAAGGAATGTATCGTCTTGAATACTTTATG
130 GATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAGG
* * * * **
7050 GATCCGAAGTTATAAAAGACCGAGTAAAAGTTTGACAAGTTCGGAAGCTT-GTCCAAGAACAAAG
195 GAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAG-TTCGTCCAAGAACAAAG
* * *
7114 AGAAAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG-CCAAAATTTGTTT-ACAAAATGAC
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGAC
** * * * * * *
7177 AAACTATTTAGACCAAATGATTTGATTTCACGAGCATGGAATGCTCGGAAATTTTCTCTAAGGAA
323 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * ** * * * *
7242 TGGATCTTGTTGAATACTTTACGGAGCCAAAGTTAAAAAATAGC
388 TGGATCTTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
* * * * * * *
7286 TCGTAAAA-TCGTGACAGGTTTGAAAGTTCATCCAAAAAACAAAGAGAGAAATAATTCTCATGTA
1 TCGTAAAAGT-TTGACAAGTTCG-AAGTTCGTCC-AAGAACAAAGAGAGAAACAATTCTCACGTA
* *
7350 AATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAGATGAT
63 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
** * * * * * * *
7415 TTGATTTCCCGGGCACGGAATATTCAGAAATTTTCTCTAAGGAATGGATCTTATTGAATACTTTA
128 GCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTA
* * * * * *
7480 GCGAACCGAAGTTAAAAAATAATTCGTAAAAGTTTGACAGGTTTGAAAGTTTGTCCAAGAACAAA
193 GGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAA
*
7545 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCCAAACTTGTTT
258 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
7600 AACAAGTAAA
Statistics
Matches: 5999, Mismatches: 1015, Indels: 307
0.82 0.14 0.04
Matches are distributed among these distances:
405 270 0.05
406 3 0.00
409 4 0.00
410 3 0.00
411 2 0.00
413 3 0.00
414 72 0.01
415 8 0.00
419 3 0.00
420 2 0.00
421 327 0.05
422 327 0.05
423 57 0.01
424 213 0.04
425 5 0.00
426 5 0.00
427 7 0.00
428 7 0.00
429 7 0.00
430 242 0.04
431 1200 0.20
432 1741 0.29
433 1405 0.23
434 82 0.01
435 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (431 bp):
TCGTAAAAGTTTGACAAGTTCGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAT
AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
ATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAGGG
AACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAG
AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAA
CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
ATCTTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAAC
Found at i:2002 original size:216 final size:215
Alignment explanation
Indices: 1489--7599 Score: 6254
Period size: 216 Copynumber: 28.4 Consensus size: 215
1479 TACTTTAAGG
* * * * * * * * *
1489 AAGTTAGAAAAGTTCGATAGATCGTCCATGAACCAAGAGAGAGACATTTCTCTCGTAAATAAGTA
1 AAGTTTGACAAGTTCGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
1554 TTTAATTCAATGACTAAAACTTGTTT-ACAAAATGACAAACTAGTTAGACTAAATGATGCGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * * *
1618 CCCGAGCATCGAATGTTCGAAAAATTGTTTTAAGGATTGGATCTTGTTGAATACTGTAGGGAACC
129 CCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
* *
1683 GAAGTTA-AAAAAAACT-CGTAA
194 GAAGTTATAAAAGATCTAC-TAA
* * *
1704 AAGTTTGCCAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGGAACAATTCTCACGTGAATAAGTT
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
1769 TTTAATTCAAAGACCAAAACTTGTTTGAAAAAAGACAAACTATTTTGACCAAATGATGAGATTTG
65 TTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * * ***
1834 TCGAGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGGTCATCTTGAATACTTTAAGGAAGTT
130 CCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACCG
**
1899 AAGTTATAAAAGATCTACTCG
195 AAGTTATAAAAGATCTACTAA
* * * * * * *
1920 AAGTTAGACAAGTTCGATAGATCGTCCATGAACCAAGATAGAGACAATTCTCA-GATGAATAAGT
1 AAGTTTGACAAGTTCGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG-TAAATAAGT
*
1984 TTTTAATTCAAAGACC-AAATTTGTTTGCAAAAA-GACAAACTATTTAGACCAAATGATGCGATT
64 TTTTAATTCAAAGACCAAAACTTGTTTG-AAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * *
2047 TGCCGAGCATGGAATGTTCAGAAAATTTCTCGAAGGAATGGATCGTCTTGAATACTTTATGGATC
128 TCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAAC
* * * *
2112 CGAAGTTATAAAATACCCAGTAA
193 CGAAGTTATAAAAGATCTACTAA
* * * *
2135 AAGTTTGACAAGTTTGAAAGTTCGTCCAAGAAGAAAGAGAGAAATAATTCTCAAGTAAATAAGTT
1 AAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * **
2200 TTTAATTCAAAGACCAAAATTTG-TTCACAAAATAACAAACTATTTAGACCAAATGATTTGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * **
2264 CCCGAGCATGGAATGTTCGGAAATTTGCTTTAAGGAATGGATCTTGTTGAATACTTTTGGGAACC
129 CCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
* * *
2329 GAAGTTAAAAAATAACT-CGTAA
194 GAAGTTATAAAAGATCTAC-TAA
*
2351 AAGTTTTACAA-TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 AAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
2415 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGAAAAACTATTTAAACCAAATGATGCGATTTC
65 TTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * ***
2480 TCAAGCATGGAATGTTCGAAAAATTGCTCGAACGAATGGATCGTCTTGAATACTTTAAGGAAGTT
130 CCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACCG
**
2545 AAGTTATAAAAGATCT-CTTCG
195 AAGTTATAAAAGATCTAC-TAA
* * * * * * * * *
2566 AAGTTAGAAAAGTTCGATAGATCGTCCATGAACCAAGAGAGAGACATTTCTCTCGTAAATAAGTA
1 AAGTTTGACAAGTTCGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * **
2631 TTTAATTCAATGACTAAAACTTGTTT-ACAAAATGACAAACTAGTTAGATTAAATGATGCGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * *
2695 CTCGAGCATGGAATGCTT-GGAAAATTGCTTTAAGGATTGGATCTTGTTGAATACTATAGGGAAC
129 CCCGAGCATGGAATG-TTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAAC
* * *
2759 CGAAGTTAAAAAATAACT-CGTAA
193 CGAAGTTATAAAAGATCTAC-TAA
* * *
2782 AAGTTTGCCAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGGAACAATTCTCACGTGAATAAGTT
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
2847 TTTAATTCAAAGATCGAAACTTGTTTGCAGAGAA-GACAAACTATTTAGACCAAATGATGCGATT
65 TTTAATTCAAAGACCAAAACTTGTTTG-A-AAAATGACAAACTATTTAGACCAAATGATGCGATT
** * * * * *
2911 TCCAAAGCATGGAATGTTCGAAAAATTGTTCGGAA-GAATAGATCTTCTTGAATACTTTAAGGAT
128 TCCCGAGCATGGAATGTTCGGAAAATTGCTC-TAAGGAATGGATCTTCTTGAATACTTTAAGGAA
* * *
2975 CCGATGTTATAAAAGAACTAGTAA
192 CCGAAGTTATAAAAGATCTACTAA
* *
2999 AAGTTTGACAAGTTCAGAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTA
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
3064 TTTAATTCAAGGAACAAAACTTGTTT-ACAAATTGACAAACTATTTAGACCAAATGATGTGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * *
3128 CCCGAGCTTGGAGTGTTCGAAAAAATAGCTCTAAGAAATGGATCTTGTTGAATACTTT-TGAGAA
129 CCCGAGCATGGAATGTTCG-GAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAG-GAA
* *
3192 CCGAAGTTA-ACAAATAACT-CGTAA
192 CCGAAGTTATA-AAAGATCTAC-TAA
*
3216 AAGTTTTG-CAA-TTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
1 AAG-TTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
3279 TTTTAAATCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAACGATGCGATTT
64 TTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * *
3344 CCCGCA-CATGTAATGTTCGAAAAATTGCTTTAAGGATTGGATCTTATTGAATACTGT-AGGGAC
129 CCCG-AGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAAC
* * * *
3407 CCAGAGTTAAAAAATAACT-CGTAA
193 CGA-AGTTATAAAAGATCTAC-TAA
* * *
3431 AAGTTTG-C-----C-AAGTTCATCCAAGAATAAAGAGAGAAACAATTCTCACGTGAATAAGTTT
1 AAGTTTGACAAGTTCGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * **
3489 TTAATTCAAAGACCAAAACTTGTTTGAAAAAAGACAAACTATTTTGACCAAATGATGCGATTTGT
66 TTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * ***
3554 CGAGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCATCTTGAATACTTCAAGGAAGTTA
131 CGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGA
* **
3619 AGTTATAAAAGATCTCCTCG
196 AGTTATAAAAGATCTACTAA
* * * * * * * *
3639 AAGTTAGACAAGTTTGATAGATCGTCCATGAACCAAGAGAGAGACAATTCTCTCGTAAATAAGTA
1 AAGTTTGACAAGTTCGA-AGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
3704 TTTAATTCAATGACTAAAACTTGTTT-ACAAAATGACAAACTAGTTAGACTAAATGATGCGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * *
3768 --C---C-----ATGCTCGAAAAATTGCTTTAAGGATTGGATCTTGTTGAATACTGTAGGGAACC
129 CCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
* * *
3823 AAAGTTA-ACAAATAACT-CGTAA
194 GAAGTTATA-AAAGATCTAC-TAA
* * * *
3845 AAGTTTGGA-AAGTTCGGAAGTTCGTCCAAGGACAAAGAGAGAAATAATTCTCACATGAATAAGT
1 AAGTTT-GACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
*
3909 TTTTAATTCAAAGACTAAAACTTGTTTGCAAAAA-GACAAACTATTTAGACCAAATGATGCGATT
64 TTTTAATTCAAAGACCAAAACTTGTTTG-AAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * * *
3973 TGCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCCTGAATACTTTATGGATC
128 TCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAAC
* *
4038 CGAAGTTATAAAAGACCTAGTAA
193 CGAAGTTATAAAAGATCTACTAA
*
4061 AAGTTTGACAAGTTCGGAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
4126 TTTAATTCAAAGACCAAAATTTGTTTGCAAAATGAAAAACTATTTAGACCAAACGATGCGATTTC
65 TTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * * * *
4191 CTGTGCATGGAATGTTCAGAAATTTTCTCTAAGGATTGGATCTTGTTGAATACTTTAGGGAATCG
130 CCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACCG
* * *
4256 AAGTTAGAAAATAACT-CGTAA
195 AAGTTATAAAAGATCTAC-TAA
* * * *
4277 AAGTTTGACAAGTTTGAAAGTTCATCCAAGAACAAAGAGAGATACAATTCTCAGGTAAATAAGTT
1 AAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
4342 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGAAAAACTATTTAGACCAAACGATGCGATTTC
65 TTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * * * * *
4407 CTGTGCATGGAATGTTCAGAAATTTTCTCTAAGGATTGGATCTTGTTGAATACTGTAGGGAACCA
130 CCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACCG
* * * *
4472 AAGTTAAAAAATAACT-CGTTA
195 AAGTTATAAAAGATCTAC-TAA
* * * * *
4493 AAGTTTGGCAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAATAATTCTCACATGAATAAGGT
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
4558 TTTAATTCAAAGACCAAAACTTGTTTGAAAAAAGACAAACTATTTAGACCAAATGATGCGATTTG
65 TTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * *
4623 ACGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTATGGATCCG
130 CCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACCG
* * *
4688 AAGTTATAAAAGACCTAGTGA
195 AAGTTATAAAAGATCTACTAA
*
4709 AAGTTTGACAAGTTCGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* **
4774 TTTAATTCAAAGACCAAAATTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATTTGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
4838 CCCGAGCATGGAATGTTCGGAAATTTGCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAGCC
129 CCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
* * * *
4903 AAAGTTAAAAAATAGCT-CGTAA
194 GAAGTTATAAAAGATCTAC-TAA
* * * * *
4925 AATTTTGACAAGTTTGAAAGTTCGTCCAAAAAACAAAGAGAGAAACAATTCTCACATAAATAAAT
1 AAGTTTGACAAGTTCG-AAGTTCGTCC-AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
4990 TTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGATTT
64 TTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* ** * * * * **
5055 CCCAAGCATGGAATGTTCAAAAAATTG-TACGAAAGAATAGATCGTCTTGAATACTTTAAGGATT
129 CCCGAGCATGGAATGTTCGGAAAATTGCT-CTAAGGAATGGATCTTCTTGAATACTTTAAGGAAC
* * *
5119 CGATGTTATAAAAGAACTAGTAA
193 CGAAGTTATAAAAGATCTACTAA
* * * *
5142 AAGTTCGACAAGTTCGGAAGTTCGTCAAAGAACGAAGATAGAAACAATTCTCACGTAAATAAGTT
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * **
5207 TTTAAATCAAAGACCAAAATTTGTTT-ACAAAAAGACAAACTCTTTGGACCAAATGATTTGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * *
5271 CACGAGCATGGAATGTTCAGAAATTTTCTCTAAGGAATGGATCTTGTTGAGTACTTT-AGG-A--
129 CCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
5332 -AA-TT-T------TCTCACGTAA
194 GAAGTTATAAAAGATCT-AC-TAA
* * * *
5347 AAGTTTGACAAGTTTGAAAGTTCGTCCATGATCAAAGAGAGAAACAATTCTCACGTAAATAATTT
1 AAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
5412 TTTAATTCAAAGACCAATACTTGTTCGCAAAATGACAAACTATTTAGACCAAATGATGTGATTTC
65 TTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * * *
5477 ACAAGCATGGAATGTTCGAAAAATTGTTCGGAA-GAATAGATCGTCTTGAATACTTTAAGGATCC
130 CCGAGCATGGAATGTTCGGAAAATTGCTC-TAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
* * *
5541 GATGTTATAAAAGAACTAGTAA
194 GAAGTTATAAAAGATCTACTAA
* *
5563 AAGTTTGACAAGTTCGGAAGTTCGTCAAACAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
5628 TTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAACAATTTCGACCAAATGATGCGATTTC
65 TTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* ** * * * * * *
5693 CCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAATACTTTAAGGATCC-
130 CCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACCG
* * *
5757 AATGGTATAAAAGAACTAGTAA
195 AA-GTTATAAAAGATCTACTAA
* * * * *
5779 AAGTTTTACAAGTTCGGAAGTTCATCAAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGCT
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* **
5844 TTTAATTCAAAGACCAAAATTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATTTGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * *
5908 CCCGAGCATGGAATGTTCAGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAGCC
129 CCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
* * * *
5973 AAAGTTAAAAAATAGCT-CGTAA
194 GAAGTTATAAAAGATCTAC-TAA
* * * *
5995 AATTTTGACATGTTTGAAAGTTCGTCCAGAAAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
1 AAGTTTGACAAGTTCG-AAGTTCGTCCA-AGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
6060 TTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATAAACAATTTTGACCAAATGATGCGATTT
64 TTTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* ** * * * * * * *
6125 CCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATAGATCGTCTTGAACACTTTAAGGATCC
129 CCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
* * *
6190 GATGTTATAAAAGAACTAGTAA
194 GAAGTTATAAAAGATCTACTAA
* * *
6212 AAGTTTGACAAGGTCGGAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTT
1 AAGTTTGACAAGTTC-GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
*** * * * **
6277 TTTAATTTGCAGACAAAAATTTGTTT-ACAAAGTGACAAACTATTTAGACCAAATGATTTGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
6341 CCCGAGCATGGAATGTTC-GAAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGATC
129 CCCGAGCATGGAATGTTCGGAAAA-TTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAAC
* * * *
6405 CAAAGTTAAAAAATAGCT-CGTAA
193 CGAAGTTATAAAAGATCTAC-TAA
* * * * * **
6428 AATTTTGACATGTTTGAAAGTTCATCCAGAAAACAAAGAGAGAAACAATTCTCTTGTAAATAAGT
1 AAGTTTGACAAGTTCG-AAGTTCGTCCA-AGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* **
6493 TTTTAATTCAAAGACCAAAATTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATTTGATT
64 TTTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * *
6557 TCCCGAGCATGGAATGTTCAGAAATTTTCTCTAAGGAATGGATCTTATTGAATACTTGAGGGAAC
128 TCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAAC
* * * **
6622 TGAAGTTAAAAAATAAT-TTGTAA
193 CGAAGTTATAAAA-GATCTACTAA
* * *
6645 AAGTTTGACAAGTTTGAAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 AAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
6710 TTTAATTCAAAGACCCAAACTTGTTTGCAAAATGATAAACTATTTAGACCAAATGATGCGATTTC
65 TTTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * * * *
6775 ACAAGCATGGAATGTTCGAAAAATTGTTCCGAA-GAATAGATCATCTTGAATACTTTAAGTATCC
130 CCGAGCATGGAATGTTCGGAAAATTGCT-CTAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
* * * *
6839 GATGTTATATAAGAACTAGTAA
194 GAAGTTATAAAAGATCTACTAA
* * * *
6861 AAGTTTGAGAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAAAAATTCTCACGTAAATAAGTA
1 AAGTTTGACAAG-TTCGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
6926 TTTAATTCAAAGAACAAAACTTGTTT-ACAAAATGACAAATTATTTAGACCAAATGATGCGATTT
65 TTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * *
6990 GCCGAGCATGGAATGTTCGGAAAATTGTTCGAAGGAATGTATCGTCTTGAATACTTTATGGATCC
129 CCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACC
* * *
7055 GAAGTTATAAAAGACCGAGTAA
194 GAAGTTATAAAAGATCTACTAA
* *
7077 AAGTTTGACAAGTTCGGAAGCTT-GTCCAAGAACAAAGAGAAAAACAATTCTCACATAAATAAGT
1 AAGTTTGACAAGTTC-GAAG-TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* **
7141 TTTTAATTCAAAG-CCAAAATTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATTTGATT
64 TTTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * *
7204 TCACGAGCATGGAATGCTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAGC
128 TCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAAC
* * * *
7269 CAAAGTTAAAAAATAGCT-CGTAA
193 CGAAGTTATAAAAGATCTAC-TAA
* * * * * * *
7292 AA-TCGTGACAGGTTTGAAAGTTCATCCAAAAAACAAAGAGAGAAATAATTCTCATGTAAATAAG
1 AAGT-TTGACAAGTTCG-AAGTTCGTCC-AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG
* * **
7356 TTTTTAATTCAAAGACCAAAATTTGTTT-ACAAAATGACAAACTATTTAGACCAGATGATTTGAT
63 TTTTTAATTCAAAGACCAAAACTTGTTTGA-AAAATGACAAACTATTTAGACCAAATGATGCGAT
* * * * * * *
7420 TTCCCGGGCACGGAATATTCAGAAATTTTCTCTAAGGAATGGATCTTATTGAATACTTT-AGCGA
127 TTCCCGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAG-GA
* *
7484 ACCGAAGTTA-AAAA-ATAATTCGTAA
191 ACCGAAGTTATAAAAGAT-CTAC-TAA
* * *
7509 AAGTTTGACAGGTTTGAAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 AAGTTTGACAAGTTCG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
7574 TTTAATTCAAAGACCCAAACTTGTTT
65 TTTAATTCAAAGACCAAAACTTGTTT
7600 AACAAGTAAA
Statistics
Matches: 4953, Mismatches: 806, Indels: 273
0.82 0.13 0.05
Matches are distributed among these distances:
203 2 0.00
204 2 0.00
205 157 0.03
206 159 0.03
207 9 0.00
208 168 0.03
209 8 0.00
210 4 0.00
211 5 0.00
212 1 0.00
214 16 0.00
215 743 0.15
216 2734 0.55
217 925 0.19
218 20 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (215 bp):
AAGTTTGACAAGTTCGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
TTAATTCAAAGACCAAAACTTGTTTGAAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
CGAGCATGGAATGTTCGGAAAATTGCTCTAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGA
AGTTATAAAAGATCTACTAA
Found at i:8116 original size:564 final size:563
Alignment explanation
Indices: 7072--8164 Score: 1607
Period size: 564 Copynumber: 1.9 Consensus size: 563
7062 TAAAAGACCG
* * *
7072 AGTAAAAGTTTGACAAGTTCGGAAGCTTGTCCAAGAACAAAGAGAAAAACAATTCTCACATAAAT
1 AGTAAAAGTTTAACAAGTTCGGAAGCTTGTCAAAGAACAAAGAGAAAAACAATTCTCACAAAAAT
*
7137 AAGTTTTTAATTCAAAGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGA
66 AAGCTTTTAATTCAAAGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGA
*
7202 TTTCACGAGCATGGAATGCTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGA
131 TTTCACGAGCATGGAATGCTCGAAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGA
*
7267 GCCAAAGTTAAAAAATAGCTCGTAAAATCGTGACAGGTTTGAAAGTTCATCCAAAAAACAAAGAG
196 ACCAAAGTTAAAAAATAGCTCGTAAAATCGTGACAGGTTTGAAAGTTCATCCAAAAAACAAAGAG
* * * *
7332 AGAAATAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAA
261 AGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTACAAAATGACAAA
* * ** ** * * * * *
7397 CTATTTAGACCAGATGATTTGATTTCCCGGGCACGGAATATTCAGAAATTTTCTCTAAGGAATGG
326 CAATTTAGACCAAATGATGCGATTTCCCAAGCACGGAATATTCAAAAAATTTCTCGAAAGAATAG
** * * * * *
7462 ATCTTATTGAATACTTTAGCGAACCGAAGTTAAAAAATAATTCGTAAAAGTTTGACAGGTTTGAA
391 ATAGTATTGAATACTTTAGCGAACCGAAGTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGAA
* * * * * * *
7527 AGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCCAA
456 AGTTCGACAAAGAACAAAGAGAGAAACAATTCTAACATAAAAAAGTTTTTAATTCAAAGACCAAA
7592 ACTTGTTTAACAAGTAAAAAGGATCCGATGAAATAAGAGAACT
521 ACTTGTTTAACAAGTAAAAAGGATCCGATGAAATAAGAGAACT
* * *
7635 AGTAAAAGTTTAACAAGTTTGGAAG-TTCGTTAAAGAACAAAGAGAGAAACAATTCTCACAAAAA
1 AGTAAAAGTTTAACAAGTTCGGAAGCTT-GTCAAAGAACAAAGAGAAAAACAATTCTCACAAAAA
7699 TAAGCTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTT
65 TAAGCTTTTAATTCAAAG-CCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTT
* *
7764 GATTTCCCGAGCATGGAATGTTCGAAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACG
129 GATTTCACGAGCATGGAATGCTCGAAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACG
** * * *
7829 GAACCAAAGTTAAAAAATAGCTCGTAAAATTTTGACATGTTTGAAAGTTCGTCCATAAAACAAAG
194 GAACCAAAGTTAAAAAATAGCTCGTAAAATCGTGACAGGTTTGAAAGTTCATCCAAAAAACAAAG
* * *
7894 GGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATA
259 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTACAAAATGACA
* * * *
7959 AACAATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAAATTT-TCGAAATAA
324 AACAATTTAGACCAAATGATGCGATTTCCCAAGCACGGAATATTC-AAAAAATTTCTCGAAAGAA
* * * *
8023 TAGATAGTCTTGAATACTTTAAG-GATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTT
388 TAGATAGTATTGAATACTTT-AGCGAACCGAAGTTAAAAAAGAACTAGTAAAAGTTTGACAAGTT
*
8087 CGGAAGTTCGACAAAGAACAAAGAGAGAAACAATTCTAACATAAAAAAGTTTTTAATTCAAAGAC
452 CGAAAGTTCGACAAAGAACAAAGAGAGAAACAATTCTAACATAAAAAAGTTTTTAATTCAAAGAC
*
8152 CAAAATTTGTTTA
517 CAAAACTTGTTTA
8165 CAAAATGACA
Statistics
Matches: 468, Mismatches: 58, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
562 2 0.00
563 72 0.15
564 385 0.82
565 9 0.02
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (563 bp):
AGTAAAAGTTTAACAAGTTCGGAAGCTTGTCAAAGAACAAAGAGAAAAACAATTCTCACAAAAAT
AAGCTTTTAATTCAAAGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGA
TTTCACGAGCATGGAATGCTCGAAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGA
ACCAAAGTTAAAAAATAGCTCGTAAAATCGTGACAGGTTTGAAAGTTCATCCAAAAAACAAAGAG
AGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTACAAAATGACAAA
CAATTTAGACCAAATGATGCGATTTCCCAAGCACGGAATATTCAAAAAATTTCTCGAAAGAATAG
ATAGTATTGAATACTTTAGCGAACCGAAGTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGAA
AGTTCGACAAAGAACAAAGAGAGAAACAATTCTAACATAAAAAAGTTTTTAATTCAAAGACCAAA
ACTTGTTTAACAAGTAAAAAGGATCCGATGAAATAAGAGAACT
Found at i:8191 original size:216 final size:216
Alignment explanation
Indices: 7610--8981 Score: 1568
Period size: 216 Copynumber: 6.3 Consensus size: 216
7600 AACAAGTAAA
** * * * *
7610 AAGGATCCGATGAAATAAGAGAACTAGTAAAAGTTTAACAAGTTTGGAAGTTCGTTAAAGAACAA
1 AAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAA
* * *
7675 AGAGAGAAACAATTCTCACAAAAATAAGCTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
66 AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
* ** * * * * *
7740 CAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGAAAATTTTCTCTAAGGA
131 CAAACAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTTCTCGAAAGA
* *
7805 ATGGATCTTGTTGAATACTTT
196 ATAGATCTTCTTGAATACTTT
* * * * * * * * * * * *
7826 ACGGAACCAAAGTTAAAAAATAGCTCGTAAAATTTTGACATGTTTGAAAGTTCGTCCATAA-AAC
1 AAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CA-AAGAAC
* * * *
7890 AAAGGGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAAT
64 AAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* *
7955 GATAAACAATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAAATTT-TCGAA
129 GACAAACAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC-AAAAAATTTCTCGAA
* **
8019 ATAATAGATAGTCTTGAATACTTT
193 AGAATAGATCTTCTTGAATACTTT
*
8043 AAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGACAAAGAACAA
1 AAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAA
* * *
8108 AGAGAGAAACAATTCTAACATAAAAAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
66 AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
* ** * ** * * *
8173 CAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAATGTTCGGAAATTTTCTCTAAGGA
131 CAAACAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTTCTCGAAAGA
* *
8238 ATTGATCTTGTTGAATACTTT
196 ATAGATCTTCTTGAATACTTT
* * * * * * * * *
8259 AAGGAACCAAAGTTAAAAAATAACTCGTAAGAGTTTGACAAG-TCTGAAAGTTCGTCCAAGAACA
1 AAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTC-GGAAGTTCGTCAAAGAACA
* * *
8323 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAATACTTGTTTGCAAAATG
65 AAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * * * *
8388 ATAAACAATTTCGACCAACTGATGCGATTTCCAAAGCATGGAATGTTAAAAAAATTGCACGAAAG
130 ACAAACAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTTCTCGAAAG
*
8453 AATAGATCATCTTGAATACTTT
195 AATAGATCTTCTTGAATACTTT
* *
8475 AAGGATCTGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTTAAAGAACAA
1 AAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAA
* *
8540 AGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA
66 AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
* ** * * ** * *
8605 CAAACTATTTAGACCAAATGATTTGATTTTCCGAGCATGGAATGTTCGGAAATTTTCTCTG-AGG
131 CAAACAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTTCTC-GAAAG
* *
8669 AATGGATCTTGTTGAATACTTT
195 AATAGATCTTCTTGAATACTTT
* * * * * * * * * * * *
8691 ACGGAGCCAAAGTTAAAAAATAGCTCGTAAAATTTTGACATGTTTGAAAGTTCGTCCAGAA-AAC
1 AAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CA-AAGAAC
* ** * * *
8755 AAAGAAAGAAACAATTCTCATGTAACTAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAAT
64 AAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT
* * * *
8820 GATAAACAATTTCGACCCAATGATGCAATTTCCCAAGCATGGAATGTTCAAAAAATTGT-TCGAA
129 GACAAACAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATT-TCTCGAA
* *
8884 AGAATAGATCGTCCTGAATACTTT
193 AGAATAGATCTTCTTGAATACTTT
** * *
8908 AAGGATCCGATGAAATAAGAGAACTAGTAAAAGTTTAACAAGTTCGGAAGTTCGTCAAAGAACAA
1 AAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAA
8973 AGAGAGAAA
66 AGAGAGAAA
Statistics
Matches: 943, Mismatches: 200, Indels: 26
0.81 0.17 0.02
Matches are distributed among these distances:
215 12 0.01
216 580 0.62
217 339 0.36
218 12 0.01
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (216 bp):
AAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACAA
AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGA
CAAACAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTTCTCGAAAGA
ATAGATCTTCTTGAATACTTT
Found at i:8575 original size:996 final size:995
Alignment explanation
Indices: 6641--8596 Score: 2715
Period size: 996 Copynumber: 2.0 Consensus size: 995
6631 AAAATAATTT
* * * * **
6641 GTAAAAGTTTGACAAGTTTGAAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTTACGTAAATA
1 GTAAAAGTTTAACAAGTTTGAAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACAAAAATA
* * * *
6706 AGTTTTTAATTCAAAGACCCAAACTTGTTTGCAAAATGATAAACTATTTAGACCAAATGATGCGA
66 AGCTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
6771 TTTCACAAGCATGGAATGTTCGAAAAATTGTTCCGAAGAATAGATCATCTTGAATACTTTAAGTA
131 TTTCACAAGCATGGAATGTTCGAAAAATTGTTCCGAAGAATAGATCATCTTGAATACTTTAAGGA
* * * * * * * *
6836 TCCGATGTTATATAAGAACTAGTAAAAGTTTGAGAAGTTTGGAAGTTCGTCCAAGAACAAAGAGA
196 ACCAAAGTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAAAACAAAGAGA
* *
6901 GAAAAAATTCTCACGTAAATAAGTATTTAATTCAAAGAACAAAACTTGTTTACAAAATGACAAAT
261 GAAAAAATTCTCACGTAAATAAGTATTTAATACAAAGAACAAAACTTGTTTACAAAATGACAAAC
* * * ** *
6966 TATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATGTTCGGAAAATTGTTCGAAGGAATGTA
326 AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATGTA
* * *
7031 TCGTCTTGAATACTTTATGGATCCGAAGTTATAAAAGACCGAGTAAAAGTTTGACAAGTTCGGAA
391 TAGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACGAGTAAAAGTTTGACAAGTTCGGAA
* * * *
7096 GCTTGTCCAAGAACAAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGCCAAAAT
456 GCTTGACAAAGAACAAAGAGAAAAACAATTCTAACATAAAAAAGTTTTTAATTCAAAGCCAAAAT
7161 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCACGAGCATGGAATGCTCGGA
521 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCACGAGCATGGAATGCTCGGA
* * *
7226 AATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTACGGAGCCAAAGTTAAAAAATAGCTCGTA
586 AATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTCGTA
* * * *
7291 AAATCGTGACAGGTTTGAAAGTTCATCCAAAAAACAAAGAGAGAAATAATTCTCATGTAAATAAG
651 AAATCGTGACAAGTCTGAAAGTTCATCCAAAAAACAAAGAGAGAAACAATTCTCACGTAAATAAG
* * **
7356 TTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAGATGATTTGATT
716 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAGATGATGCGATT
*** * * * * * * * * *
7421 TCCCGGGCACGGAATATTCAGAAATTTTCTCTAAGGAATGGATCTTATTGAATACTTTAGCGAAC
781 TCCAAAGCACGGAATATTAAAAAAATTGCACGAAAGAATAGATCATATTGAATACTTTAGCGAAC
* * * * * * *
7486 CGAAGTTAAAAAATAATTCGTAAAAGTTTGACAGGTTTGAAAGTTTGTCCAAGAACAAAGAGAGA
846 CGAAGTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAACAAAGAGAGA
* * *
7551 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCCAAACTTGTTTAACAAGTAAAAAGGAT
911 AACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAACTTGTTTAACAAGTAAAAAGGAT
7616 CCGATGAAATAAGAGAACTA
976 CCGATGAAATAAGAGAACTA
* *
7636 GTAAAAGTTTAACAAGTTTGGAAGTTCGTTAAAGAACAAAGAGAGAAACAATTCTCACAAAAATA
1 GTAAAAGTTTAACAAGTTTGAAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACAAAAATA
* **
7701 AGCTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGA
66 AGCTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * * * * *
7766 TTTCCCGAGCATGGAATGTTCG-AAAATT-TTCTCTAAGGAATGGATCTTGTTGAATACTTTACG
131 TTTCACAAGCATGGAATGTTCGAAAAATTGTTC-CGAA-GAATAGATCATCTTGAATACTTTAAG
* * * * *
7829 GAACCAAAGTTAAAAAATAGCTCGTAAAATTTTGACATGTTTGAAAGTTCGTCCATAAAACAAAG
194 GAACCAAAGTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCA-AAAACAAAG
* * * * * *
7894 GGAGAAACAATTCTCACGTAAATAAGTTTTTAATACAAAGACCAAAACTTGTTTGCAAAATGATA
258 AGAGAAAAAATTCTCACGTAAATAAGTATTTAATACAAAGAACAAAACTTGTTTACAAAATGACA
* *
7959 AACAATTTCGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAAATT-TTCGAAATAA
323 AACAATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTC-AAAAAATTGTTCGAAAGAA
* *
8023 TAG-ATAGTCTTGAATACTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTT
387 T-GTATAGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACGAGTAAAAGTTTGACAAGTT
*
8087 CGGAAG-TTCGACAAAGAACAAAGAGAGAAACAATTCTAACATAAAAAAGTTTTTAATTCAAAGA
451 CGGAAGCTT-GACAAAGAACAAAGAGAAAAACAATTCTAACATAAAAAAGTTTTTAATTCAAAG-
*
8151 CCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCCCGAGCATGGAAT
514 CCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCACGAGCATGGAAT
* *
8216 GTTCGGAAATTTTCTCTAAGGAATTGATCTTGTTGAATACTTTAAGGAACCAAAGTTAAAAAATA
579 GCTCGGAAATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAAGGAACCAAAGTTAAAAAATA
* * * *
8281 ACTCGTAAGAGT-TTGACAAGTCTGAAAGTTCGTCC-AAGAACAAAGAGAGAAACAATTCTCACG
644 ACTCGTAA-AATCGTGACAAGTCTGAAAGTTCATCCAAAAAACAAAGAGAGAAACAATTCTCACG
* * * *
8344 TAAATAAGTTTTTAATTCAAAGACCAATACTTGTTTGCAAAATGATAAACAATTTCGACCA-ACT
708 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAGA-T
* * *
8408 GATGCGATTTCCAAAGCATGGAATGTTAAAAAAATTGCACGAAAGAATAGATCATCTTGAATACT
772 GATGCGATTTCCAAAGCACGGAATATTAAAAAAATTGCACGAAAGAATAGATCATATTGAATACT
* * * * * *
8473 TTAAG-GATCTGATGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTTAAAGAA
837 TT-AGCGAACCGAAGTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAA
*
8537 CAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAATTTGTTTA
901 CAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAACTTGTTTA
8597 CAAAATGACA
Statistics
Matches: 835, Mismatches: 116, Indels: 19
0.86 0.12 0.02
Matches are distributed among these distances:
993 3 0.00
994 9 0.01
995 202 0.24
996 459 0.55
997 160 0.19
998 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (995 bp):
GTAAAAGTTTAACAAGTTTGAAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACAAAAATA
AGCTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
TTTCACAAGCATGGAATGTTCGAAAAATTGTTCCGAAGAATAGATCATCTTGAATACTTTAAGGA
ACCAAAGTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAAAACAAAGAGA
GAAAAAATTCTCACGTAAATAAGTATTTAATACAAAGAACAAAACTTGTTTACAAAATGACAAAC
AATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGTTCGAAAGAATGTA
TAGTCTTGAATACTTTAAGGATCCGAAGTTATAAAAGAACGAGTAAAAGTTTGACAAGTTCGGAA
GCTTGACAAAGAACAAAGAGAAAAACAATTCTAACATAAAAAAGTTTTTAATTCAAAGCCAAAAT
TTGTTTACAAAATGACAAACTATTTAGACCAAATGATTTGATTTCACGAGCATGGAATGCTCGGA
AATTTTCTCTAAGGAATGGATCTTGTTGAATACTTTAAGGAACCAAAGTTAAAAAATAACTCGTA
AAATCGTGACAAGTCTGAAAGTTCATCCAAAAAACAAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAGATGATGCGATT
TCCAAAGCACGGAATATTAAAAAAATTGCACGAAAGAATAGATCATATTGAATACTTTAGCGAAC
CGAAGTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAACAAAGAGAGA
AACAATTCTCACATAAATAAGCTTTTAATTCAAAGACCAAAACTTGTTTAACAAGTAAAAAGGAT
CCGATGAAATAAGAGAACTA
Done.