genome.fa.s11607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011607.1 Kokia drynarioides strain JFW-HI SEQ_126597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146773

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201--392	96	2.0	96	83	4	244	30	21	11	35	1.90
10770--10811	18	2.4	17	81	14	50	26	0	2	71	0.98
32577--32644	31	2.2	31	86	0	100	39	10	14	35	1.80
37029--37068	18	2.2	18	86	0	53	67	2	0	30	1.04
42135--42180	20	2.3	19	82	10	56	45	10	0	43	1.39
42142--42180	20	1.9	20	89	5	60	41	12	0	46	1.42
42977--43025	22	2.2	23	82	10	57	40	0	14	44	1.45
46853--46931	29	2.6	32	82	7	94	48	1	8	41	1.42
55423--55469	25	2.0	25	87	8	71	57	6	2	34	1.36
55535--55568	13	2.6	13	85	0	50	58	11	0	29	1.33
56493--56540	21	2.3	22	78	10	55	4	12	4	79	1.02
56493--56539	20	2.3	21	82	7	53	4	12	2	80	0.94
56544--56596	23	2.2	24	83	9	65	11	9	3	75	1.16
56542--56596	25	2.3	22	76	14	56	12	9	3	74	1.18
57565--57620	21	2.7	21	80	0	67	32	5	1	60	1.29
64288--64321	13	2.6	13	85	0	50	58	11	0	29	1.33
70985--71016	16	2.0	16	93	0	55	46	0	6	46	1.27
71418--71446	2	14.5	2	100	0	58	48	0	0	51	1.00
72182--72226	14	3.3	14	81	3	56	60	4	17	17	1.53
72178--72239	28	2.3	27	78	18	67	56	3	16	24	1.55
77778--78152	155	2.4	155	99	0	732	42	8	8	39	1.66
79198--79233	18	2.0	18	100	0	72	38	11	0	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80287--80351	32	2.0	32	96	0	121	32	24	0	43	1.55
89707--89746	2	20.0	2	94	0	71	50	2	47	0	1.14
93795--93850	27	2.1	27	100	0	112	35	17	14	32	1.90
102267--102321	21	2.6	21	88	0	83	27	29	14	29	1.95
102267--102331	21	3.1	21	82	4	60	30	27	12	29	1.93
102475--102514	21	1.9	21	84	0	53	30	17	20	32	1.95
103021--103081	24	2.5	25	78	10	72	36	29	18	16	1.92
106797--106828	15	2.1	15	100	0	64	18	6	40	34	1.76
107753--107785	16	2.0	17	94	5	59	54	6	9	30	1.56
108260--108285	2	13.0	2	100	0	52	50	0	0	50	1.00
112183--112232	25	2.0	25	88	0	73	28	14	20	38	1.91
112453--112489	2	18.5	2	100	0	74	51	0	0	48	1.00
117355--117409	18	3.1	19	84	10	71	34	0	5	60	1.20
117494--117528	18	1.9	18	100	0	70	22	5	17	54	1.64
121435--121515	40	2.0	40	92	0	135	39	14	17	28	1.89
123262--123306	20	2.4	19	85	10	58	46	0	0	53	1.00
128426--128464	18	2.2	18	86	4	53	56	2	0	41	1.13
128637--129383	370	2.0	370	90	1	1185	23	11	17	47	1.80
129941--129980	11	3.5	11	83	12	53	55	2	0	42	1.13
129930--129980	12	4.2	12	80	12	52	56	3	0	39	1.18
129930--129980	24	2.1	24	85	7	68	56	3	0	39	1.18
130429--130473	18	2.4	19	82	17	58	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146070--146117	17	2.8	17	83	0	60	43	4	2	50	1.33

Tables:   1

The End!