Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011613.1 Kokia drynarioides strain JFW-HI SEQ_126603, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1553
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.36

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:743 original size:125 final size:122

Alignment explanation


    Indices: 524--771  Score: 453
    Period size: 125  Copynumber: 2.0  Consensus size: 122

        514 TCATTGGCAT

                                                                             
        524 TTGTAGCAATAGTGACAGGAAAACAATTGCATCGTGGCTTCGTCAATGTGGAAAACTCAATCACC
          1 TTGTAGCAATAGTGACAGGAAAACAATTGCATCGTGGCTTCGTCAATGTGGAAAACTCAATCACC

                                                                     
        589 CCAGAGGAGAAAAGTAGACCACTCAACAAAAAATCTATTGACTATTGGCCTCAACCC
         66 CCAGAGGAGAAAAGTAGACCACTCAACAAAAAATCTATTGACTATTGGCCTCAACCC

                                                                             
        646 TTGTAGCAATAGTGAC-GAGAAAACAATTGCATCGTGGCTTCGTTTTCAATGTGGAAAACTCAAT
          1 TTGTAGCAATAGTGACAG-GAAAACAATTGCATCGTGGCTTCG---TCAATGTGGAAAACTCAAT

                                                                         
        710 CACCCCAGAGGAGAAAAGTAGACCACTCAACAAAAAATCTATTGACTATTGGCCTCAACCC
         62 CACCCCAGAGGAGAAAAGTAGACCACTCAACAAAAAATCTATTGACTATTGGCCTCAACCC

             
        771 T
          1 T

        772 CCAGCTCTCT


Statistics
Matches: 122,  Mismatches: 0, Indels: 5
        0.96            0.00        0.04

Matches are distributed among these distances:
 121    1  0.01
 122   40  0.33
 125   81  0.66

ACGTcount: A:0.36, C:0.23, G:0.19, T:0.23


Consensus pattern (122 bp):   
TTGTAGCAATAGTGACAGGAAAACAATTGCATCGTGGCTTCGTCAATGTGGAAAACTCAATCACC
CCAGAGGAGAAAAGTAGACCACTCAACAAAAAATCTATTGACTATTGGCCTCAACCC
Done.