genome.fa.s11614.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011614.1 Kokia drynarioides strain JFW-HI SEQ_126604, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114338

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28--96	3	23.0	3	93	0	120	65	1	0	33	1.02
1332--1532	29	6.8	29	86	5	262	34	28	2	34	1.71
1334--1649	58	5.4	57	81	9	295	33	27	4	33	1.78
1333--1532	59	3.4	58	88	4	294	35	28	2	34	1.71
1337--1677	29	11.6	28	73	14	196	33	27	4	34	1.78
1663--1724	28	2.2	28	85	5	81	38	27	6	27	1.81
7775--7835	3	20.3	3	93	0	104	65	1	0	32	1.02
9071--9271	29	6.8	29	86	5	262	34	28	2	34	1.71
9073--9388	58	5.4	57	81	9	295	33	27	4	33	1.78
9072--9271	59	3.4	58	88	4	294	35	28	2	34	1.71
9076--9416	29	11.6	28	73	14	196	33	27	4	34	1.78
9402--9463	28	2.2	28	85	5	81	38	27	6	27	1.81
15649--15774	66	1.9	66	96	0	234	20	31	12	34	1.90
16138--16171	2	17.0	2	87	0	50	50	2	2	44	1.32
17523--17578	19	2.8	19	74	15	51	62	1	0	35	1.06
17513--17578	20	3.2	20	78	10	62	60	4	0	34	1.17
17533--17602	30	2.3	31	75	7	72	58	1	0	40	1.07
20084--20110	9	3.0	9	100	0	54	77	0	11	11	0.99
21139--21174	17	2.1	17	89	0	54	38	2	8	50	1.47
26394--26517	23	5.4	23	80	7	128	45	22	21	9	1.81
26394--26517	46	2.7	45	83	9	155	45	22	21	9	1.81
32114--32193	20	4.2	19	76	9	74	32	0	28	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36707--36768	29	2.1	30	82	8	74	35	8	6	50	1.58
42798--42823	13	2.0	13	100	0	52	23	23	7	46	1.78
43560--43584	13	1.9	13	100	0	50	48	20	0	32	1.50
49009--49040	1	32.0	1	100	0	64	100	0	0	0	0.00
62494--62532	21	2.0	20	85	10	53	71	0	0	28	0.86
64043--64112	22	3.2	22	65	15	63	44	7	8	40	1.62
64025--64112	44	2.0	44	100	0	176	47	9	6	36	1.62
67841--67883	22	2.0	22	95	0	77	41	27	20	9	1.83
75298--75400	54	1.9	54	93	0	179	36	22	8	32	1.85
77507--77567	31	1.9	31	87	9	88	68	3	3	24	1.19
77743--77783	22	1.9	21	90	5	64	24	19	21	34	1.97
81625--81668	19	2.4	19	85	11	56	20	2	0	77	0.88
81625--81673	9	5.3	9	83	13	55	20	2	2	75	1.00
81795--81839	14	3.2	14	87	0	63	40	20	11	28	1.86
86183--86227	23	2.0	22	87	12	65	17	17	8	55	1.67
101213--101324	23	4.8	22	78	10	100	11	22	25	41	1.87
111652--111703	24	2.2	24	82	0	59	7	15	1	75	1.12
113479--113564	4	21.2	4	79	11	86	65	1	33	0	1.01
113479--113564	17	5.3	16	79	10	86	65	1	33	0	1.01
113478--113554	20	3.8	20	84	8	102	64	1	33	0	1.01

Tables:   1

The End!