Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011616.1 Kokia drynarioides strain JFW-HI SEQ_126606, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12622
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Found at i:437 original size:215 final size:215
Alignment explanation
Indices: 1--5221 Score: 5638
Period size: 216 Copynumber: 24.3 Consensus size: 215
* * *
1 AAAGAATTCTAACGTAAAAAAGCTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * *
66 ATTTTGACCAAATGATGCGGTTTCTCGGTCATGGAATCTTCAAAAAATTGGTCAAAGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
* * * * * *
131 CATCTTGAATA-TTCTTAGGAACCGATGTTATAAAAGAATTCGTAAATGTTTAACAAGTTCGGAA
131 CGTCTTGAATACTT-TCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTC-GAA
* *
195 GTTCGTCCAAGAACTAATAGAG
194 GTTCGTCCAAGAACCAAGAGAG
* * *
217 AAACAATTCTCACGTTAAAAAGTTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * ** *
282 ATTTAGACCAAATGATGCGATTTCTC-AGCACGGAATATTCAAAAAATTGCTCAAATCAATGGAA
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
* * * * *
346 CGTCTTGAATACTTTAAGGAACC-AGAGTTATAAATGAACTTGTAAAAT-TTTGACCAGTTTGTA
131 CGTCTTGAATACTTTCAGGAACCGA-AGTTATAAAAGAACTAGT-AAATGTTTGACAAGTTCG-A
* * *
409 TGTTCGTCCAAGAACTAAGAGGG
193 AGTTCGTCCAAGAACCAAGAGAG
* * * * * *
432 AAACAATTCTCACATAAAAAAGTATTTAGTTCAAAG-CACAAAAGTTGTTTACAAATTGACAAGC
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAAC
* * *
496 TATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGA
* * * * * *
561 TCGTCTTGACTACTATCAGGAACCGAAGTTATAGAAGAACTAGTTAATGTTT-AGCACGTTTAGA
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA-CAAG-TTCGA
* *
625 AGTTCGTCCAACAACCAGGAGAG
193 AGTTCGTCCAAGAACCAAGAGAG
* * * *
648 AAAGAATTCTAACGTAAAAAATTTTTTAATTCAAAGGCCAAAAGTTATTTACAAAATGACAAACG
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC-
* ** * * * *
713 T-TTTAGACCAAATAATATGATTTCCCGGTCATGGAATCTTCAAAAAATTAGTCAAAGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGA
** * * * *
777 TCGTCTTGAATACGCTCAAGAACCGAAGTTATAAAAGAACTTGTAAATGTTTAACTAGTTCAGAA
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTC-GAA
842 GTTCGTCCAAGAACCAAGAGAG
194 GTTCGTCCAAGAACCAAGAGAG
* *
864 AAATAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * ** **
929 ATTTATACCAAATGATACGATTTC-CTGATCATGGAATGCTT-GAAAATTTTTTTGAAGGAATGG
66 ATTTAGACCAAATGATGCGATTTCTC-GATCATGGAATG-TTCAAAAAATTGGTCAAAGGAATGG
* * * * *
992 ATCATCTTGACTACTATT-AGTAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTCGA
129 ATCGTCTTGAATACT-TTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGA
*
1056 TACTTCGTCCAAGAACCAAGAGAG
193 -AGTTCGTCCAAGAACCAAGAGAG
* * * * * *
1080 AAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGATCAAAATTTATTTAC-AAATGGCAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * * * *
1144 ATTTTGATCAAATTATGCGATTTCTCGATAATGGAATCTTCAGAAAATTTGTCAAAGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
* * * *
1209 CGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACTAGTTC-ATAT
131 CGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGA-A-
*
1273 GTTCGTCCAAGAACCAAGAGGG
194 GTTCGTCCAAGAACCAAGAGAG
* * * * * * * *
1295 AAATAATTCACACGTAAATAAGTATTTAATTCAAAGACTAAAACTTGTATACAAAATGATAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * ** * *
1360 ATTTAAATCAAATGAAGCGATTTC-CGGGCATGGAATGTTCGAAAAATTGG-CTGAAGGAATGGA
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTC-AAAGGAATGGA
* ** * * * * * **
1423 TCGTCTTTAATACTCCCAGGAATCAAAGTTATAAAAGAGCTTGAAAATGTTTGACGTGTTCGAAA
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCG-AA
* *
1488 GTTCGTCCAAGAACTAATAGAG
194 GTTCGTCCAAGAACCAAGAGAG
* *
1510 AAATAATTCTCACGTGAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* ** * * * * * **
1575 ATTTAGACCAAATAATGTTAATTCTC-AGCATGGAATATTCGAAAAATTGCTCAAATCAATGGAT
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
* * * *
1639 CGTCTT-AGATACTTTAAGGAACCGAAGTTATTAAAGAACTTGTAAAAT-TTTGACCAA-TTTGT
131 CGTCTTGA-ATACTTTCAGGAACCGAAGTTATAAAAGAACTAGT-AAATGTTTGA-CAAGTTCG-
* * *
1701 ATGTTCGTCCAAGAACTAAGAGGG
192 AAGTTCGTCCAAGAACCAAGAGAG
* * * * * *
1725 AAACAATTCTCACATAAAAAAGTATTTAGTTCAAAG-CACAAAAGTTGTTTACAAATTGACAAGC
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAAC
* * * *
1789 TATTTAGACCAAACGTTGCGATTTCTCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGA
* * * * *
1854 TCGTCTTGACTACTATCAGGAACCGAAGTTATATAAGAACTAGTTAATGTTT-AGCATGTTCAGA
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA-CAAGTTC-GA
* *
1918 AGTTCATCTAAGAACCAAGAGAG
193 AGTTCGTCCAAGAACCAAGAGAG
* * * * *
1941 AAAGAATTCTAATGT-AAAAAG-TTTTAATCCAAAGACCAAAAGTTATATACAAAATGACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * *
2004 ATTTTGACCAAATGATGCGATTTCCCGATCATGGAATCTTCGAAAAAA-TGGTCAACGGAATGGA
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTC-AAAAAATTGGTCAAAGGAATGGA
* * * * * * *
2068 TCGTCTTGAATACTCTCAGGAACCGAAGTTGTAATAGAACTTGTAAAAGTTTGACTAGTTCGTA-
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGAAG
*
2132 -T-GTCC--G-TCCAAGA-AGG
195 TTCGTCCAAGAACCAAGAGA-G
* * * *
2148 AAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATTACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * * *
2213 ATTTTGACCAAATAATGCGATTTCTCGATAATGGAAT-CTGAGGAAAATTGGTCAAAGGAATGGA
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCA-AAAAATTGGTCAAAGGAATGGA
* * *
2277 TCGTCTTGAATACTCTT-AGGAACCGAAGTTATGAAAGAACTCGTAAATGTTTAACCAA-TTCGG
130 TCGTCTTGAATACT-TTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA-CAAGTTC-G
* *
2340 AAGTTTGTCCAAGAGCCAAGAGAG
192 AAGTTCGTCCAAGAACCAAGAGAG
* ** * *
2364 AAACAATTCTTTCGTAATAAAGTTTTTAATTCAAAGACCAAAAATTGTTTACAAAATGACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * * *
2429 ATTTAGACCAAATGATGTGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAGGGAATTGAT
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
* * * * * *
2494 CATCTTGACTACTATCAGGAATCGAAGTTATAGAAGAACTAGTAAATGTTTGACAAGTTTGAGAG
131 CGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGA-AG
*
2559 TTTGTCCAAGAA-CAAGGAGAG
195 TTCGTCCAAGAACCAA-GAGAG
* * * *
2580 AAAGAACTCTAACGTAAAAAAGTTTTTAATTCAAAAGACCAAAAGTTATTTACAAAATAACAAAC
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAAAC
* * * * *
2645 TATTT-GACCAAATAATGCGATTTCCCGATCATGGAATCTTCTAAAAATTAGTCAAAGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGA
* * * * *
2709 TCGTCTTGGATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTAACCAGTTCGGAA
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTC-GAA
2774 GTTCGTCCAAGAACCAAGAGAG
194 GTTCGTCCAAGAACCAAGAGAG
* *
2796 AAATAATTCTCTCG-AAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * * * * * **
2860 TTTTTGTCCAAATGATGTGATTTCTCGAGCATGGAATGTTTAGAAAATTTGTTGAAGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
* * * * * * *
2925 CATCTTGAATACTCTCAAGAATCGAAGTTATAAAAGAACTCGTAAAGGTTTGACAAGTTTGGAAG
131 CGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAG-TTCGAAG
* *
2990 TTTGTCCAAGAA-TAAGAGAG
195 TTCGTCCAAGAACCAAGAGAG
* * * * *
3010 AAATAATTCACGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTCCAAAATGAC-AACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * *
3074 ATTAAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
* * * * *
3139 CGTCTTGACTACTATCAGGAATCGACGTAATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAG
131 CGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTC-GAAG
* *
3204 TTTGTCCAAGAACCAAGATAG
195 TTCGTCCAAGAACCAAGAGAG
* * * *
3225 AAAGAATTCTAATGTAAAAAAGTTTTTAATAT-AAAGACCAAAATGTTTTTTACAAAATGGCAAA
1 AAAGAATTCTCACGTAAAAAAGTTTTTAAT-TCAAAGACCAAAA-GTTGTTTACAAAATGACAAA
* * * *
3289 TTATTTTA-ACCAAATGATGCAATTTTTCGATCATGGAATCTTCAAAAAATTGGTCAAAGGAATG
64 CTA-TTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATG
* * * * * * *
3353 GATCGCCTTGAATACTCTCGGGAATCTAAGCTATAAAAGAACTAGTAAATGTTT-AGCAAATTCG
128 GATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA-CAAGTTCG
*
3417 AAAGTTCATCCAAGAACC---AGAG
192 -AAGTTCGTCCAAGAACCAAGAGAG
* * * *
3439 -AAGCAATTCTCTCGTGAAAAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACATAATGACAAAC
1 AAAG-AATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* * * * * * *
3503 TTTTTAGTCCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGTTCGAAGGAATGGA
65 TATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGA
* * * * * * * *
3568 TCATCTTGAATAATCTCAGGAACCGAAGTTATAAAATAACTCGTAAAGGTTTGACAGGTTTAGAA
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAG-TTCGAA
*
3633 GTTCTTCCAAGAA-CAAGAGAG
194 GTTCGTCCAAGAACCAAGAGAG
* * * *
3654 AAAGAATT-TACACGTAAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTTTCCAAAATGATAAAC
1 AAAGAATTCT-CACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* * *
3718 TATTTAGACCAAATGATGCGATTTCGCGATCATGGAATGTTCAAAAAATTGGTCGAAGGAATGAA
65 TATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGA
* ** * * * *
3783 TCGTCTTGACTACTACCAGGAATCGACGTAATAAAAAAACTAGTAAATGTTTGACAAGTTCGGAA
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTC-GAA
*
3848 GTTTGTCCAAGAACCAAGAGAG
194 GTTCGTCCAAGAACCAAGAGAG
* * *** * *
3870 AAAGAATTTTCACATAAAATTTTTTTTAATTTAAAGACCAAAAGTTATTTACAAAATGACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * ** *
3935 ATTTAGATCAAATGAAGTGATTTCCCGGGCATGGAATGTTCAAATAATTGGTCGAAA-GAATGGA
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTC-AAAGGAATGGA
* * * * * *
3999 TCGTCTTTAATACTCTCAAGAACCGAAGTTATAAAAGAACTCGTAAATGTTTCACGAGTTCAGAA
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTC-GAA
** * * *
4064 GTTTATCAAAGAACTAATAGAG
194 GTTCGTCCAAGAACCAAGAGAG
* ** * *
4086 AAATAATTCTCACGTAAAGTAGTTTTTAATTCAAAGACCAAAAGTTGCTTAGAAAATGACAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * *
4151 ATTTAGACCAAATGATGCGATTTCTC-AGCATGGAAT-TTCAGAAAATTGCTCAAATGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
* * * * * *
4214 CGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTTGTAAAAT-TTTGACTAGTTTGTAT
131 CGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGT-AAATGTTTGACAAGTTCG-AA
*
4278 GTTCGTCCAAGAACCAAGAAAG
194 GTTCGTCCAAGAACCAAGAGAG
* * * * * *
4300 AAACAATGCTCATGTAAAAAAGTATTTAGTTCAAAG-CACAAAAGTTGTTTACAAAACGACAAAC
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAAC
* * * * * *
4364 TATTAAGACCAAATGATGTGAATTCCCGATCATGGAATGTTCAAAAAATTGGTCGAAGGGATGGA
65 TATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGA
* * *
4429 TCGTCTTGACTACTATCAGGAACCGAAGTTATAGAAGAACTAGTAAATGTTTGACAAGTTCGAAA
130 TCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCG-AA
* *
4494 GTTTGTCCAATAA-CAAGGAGAG
194 GTTCGTCCAAGAACCAA-GAGAG
* * * *
4516 AAAGAACTCTAACGTAAAAAAAGTTTTTAATTCAAAAGACCAAAAGTTATTTATAAAATGACAAA
1 AAAGAATTCTCACGT-AAAAAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAAA
* ** * * * *
4581 CTATTTTGACCAAAAAATGCGATTTCCCGATCATGGAATCTTCTAAAAATTAGTCAAAGGAATGG
64 CTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGG
* * * * *
4646 ATCGTCTTGGATACTCTCAAGAACCGAAGTTATAAAAGAACTCA-TAAATGTTTAACCAGTTCGG
129 ATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACT-AGTAAATGTTTGACAAGTTC-G
4710 AAGTTCGTCCAAGAACCAAGAGAG
192 AAGTTCGTCCAAGAACCAAGAGAG
* * * * *
4734 AAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAATACCTAAAGTTGTTTACAAAATGAAAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * *
4799 A-TTAGACCAAATAATGCGATTTCCCGATCATGGAATGTTCGAAAATTTGGTCAAATGAATGGAT
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
** * * * *
4863 CGTCTTGACCACTATCAGGAACCGAAGTTATAAATGAACTAGTAAATGTTTGACAAGTTCGGTAC
131 CGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTC-GAAG
4928 TTCGTCCAAGAACCAAGAGAG
195 TTCGTCCAAGAACCAAGAGAG
* * * * *
4949 GAAGAATTCTCACGTAAAAAATTTTTTAATTTAAAGACCAAAAGTTATTTACAAAATGGCAAACT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * * * * * * *
5014 ATTTTGGCCAAATGATGAGATTTTTCGATCATGGAATATTCGAAAATTTTGTCAAAGGAATGAAT
66 ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
* * * * * *
5079 TGTCTTGAATACTCTCAGGAACTGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGTATG
131 CGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCG-AAG
* *
5144 TTCATCCAAGAACCAAGAGGG
195 TTCGTCCAAGAACCAAGAGAG
* * * * *
5165 AAATAACTCTCACGTAAATAGGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
1 AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
5222 TGATACGATC
Statistics
Matches: 4181, Mismatches: 718, Indels: 212
0.82 0.14 0.04
Matches are distributed among these distances:
206 1 0.00
207 20 0.00
208 11 0.00
209 134 0.03
210 7 0.00
211 1 0.00
212 6 0.00
213 142 0.03
214 522 0.12
215 1324 0.32
216 1631 0.39
217 211 0.05
218 165 0.04
219 6 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
AAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
ATTTAGACCAAATGATGCGATTTCTCGATCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGAT
CGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGAAGT
TCGTCCAAGAACCAAGAGAG
Found at i:1374 original size:431 final size:432
Alignment explanation
Indices: 5--5221 Score: 5904
Period size: 431 Copynumber: 12.1 Consensus size: 432
1 AAAG
* *
5 AATTCTAACGTAAAAAAGCT-TTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACTATT
1 AATTCTCACGTAAAAAAG-TATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * * * * *
69 TTGACCAAATGATGCGGTTTCTCGGTCATGGAATCTTCAAAAAATTGGTCAAAGGAATGGATCAT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGT
* * * * * * * *
134 CTTGAATATTCTTAGGAACCGATGTTATAAAAGAATTCGTAAATGTTTAACAAGTTCGGAAGTTC
130 CTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTC
* * * * * *
199 GTCCAAGAACTAATAGAGAAACAATTCTCACGTTAAAAAGTTTTAAATTCAAAGACCAAAAGTTG
195 GTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTG
* * *
264 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-AGCACGGAATATTCA-AAAA
260 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAAAA
* ** * * * *
327 ATTGCTCAAATCAATGGAACGTCTTGAATACTTTAAGGAACC-AGAGTTATAAATGAACTTGTAA
325 TTTG-TCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGA-AGTTATAAAAGAACTTGTAA
* * * * *
391 AATTTTGACCAGTTTGTATGTTCGTCCAAGAACTAAGAGGGAAAC
388 AAGTTTGACAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* * * *
436 AATTCTCACATAAAAAAGTATTTAGTTCAAAG-CACAAAAGTTGTTTACAAATTGACAAGCTATT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTATT
500 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGT
* * * **
565 CTTGACTACTATCAGGAACCGAAGTTATAGAAGAACTAGTTAATGTTT-AGCACGTTTAGAAGTT
130 CTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA-CAAGTTCGGAAGTT
* * * *
629 CGTCCAACAACCAGGAGAGAAAGAATTCTAACGTAAAAAATTTTTTAATTCAAAGGCCAAAAGTT
194 CGTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTT
* * ** * * *
694 ATTTACAAAATGACAAACGT-TTTAGACCAAATAATATGATTTCCCGGTCATGGAATCTTCAAAA
259 GTTTACAAAATGACAAAC-TATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAA
* * *
758 AATTAGTCAAAGGAATGGATCGTCTTGAATACGCTCAAGAACCGAAGTTATAAAAGAACTTGTAA
323 AATTTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAA
* * * * *
823 ATGTTTAACTAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAAT
388 AAGTTTGACAAGTTC-GTATGTTCGTCCAAGAACCAAGAGAGAAAC
* *
868 AATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * ** * *
933 ATACCAAATGATACGATTTCCTGATCATGGAATGCTT-GAAAATTTTTTTGAAGGAATGGATCAT
66 AGACCAAATGATGCGATTTCCCGATCATGGAATG-TTCGAAAAATTGGTCGAAGGAATGGATCGT
* * * * *
997 CTTGACTACTATTAGTAATCGAAGTTGTAAAAGAACTAGTAAATGTTTGACAAGTTC-GATACTT
130 CTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGA-AGTT
* * *
1061 CGTCCAAGAACCAAGAGAGAAAGAATTCTAATGTAAAAAAGTTTTTAATTCAAAGATCAAAATTT
194 CGTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * * *
1126 ATTTAC-AAATGGCAAACTATTTTGATCAAATTATGCGATTTCTCGATAATGGAATCTTCAGAAA
259 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAAA
1190 ATTTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAA
324 ATTTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAA
* * * *
1255 AGTTTGACTAGTTCATATGTTCGTCCAAGAACCAAGAGGGAAAT
389 AGTTTGACAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* * * * * *
1299 AATTCACACGTAAATAAGTATTTAATTCAAAGACTAAAACTTGTATACAAAATGATAAACTATTT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * **
1364 AAATCAAATGAAGCGATTT-CCGGGCATGGAATGTTCGAAAAATTGG-CTGAAGGAATGGATCGT
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTC-GAAGGAATGGATCGT
* * ** * * * * * ** *
1427 CTTTAATACTCCCAGGAATCAAAGTTATAAAAGAGCTTGAAAATGTTTGACGTGTTCGAAAGTTC
130 CTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTC
* * * * *
1492 GTCCAAGAACTAATAGAGAAATAATTCTCACGTGAAAAAGTTTTTAATTCAAAGACCAAAAGTTG
195 GTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTG
* ** * * *
1557 TTTACAAAATGACAAACTATTTAGACCAAATAATGTTAATTCTC-AGCATGGAATATTC-GAAAA
260 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAAAA
* ** * * *
1620 ATTGCTCAAATCAATGGATCGTCTT-AGATACTTTAAGGAACCGAAGTTATTAAAGAACTTGTAA
325 TTTG-TCAAAGGAATGGATCGTCTTGA-ATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAA
* * * *
1684 AATTTTGACCAA-TTTGTATGTTCGTCCAAGAACTAAGAGGGAAAC
388 AAGTTTGA-CAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* * * *
1729 AATTCTCACATAAAAAAGTATTTAGTTCAAAG-CACAAAAGTTGTTTACAAATTGACAAGCTATT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTATT
* * *
1793 TAGACCAAACGTTGCGATTTCTCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGT
* * * *
1858 CTTGACTACTATCAGGAACCGAAGTTATATAAGAACTAGTTAATGTTT-AGCATGTTCAGAAGTT
130 CTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA-CAAGTTCGGAAGTT
* * * *
1922 CATCTAAGAACCAAGAGAGAAAGAATTCTAATGT-AAAAAG-TTTTAATCCAAAGACCAAAAGTT
194 CGTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTT
* * * *
1985 ATATACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCGATCATGGAATCTTC-GAAA
259 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAG-AA
* * * * *
2049 AAATGGTCAACGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTGTAATAGAACTTGTAA
323 AATTTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAA
* *
2114 AAGTTTGACTAGTTCGTATGTCCGTCCAAG-----A-AG-GAAAC
388 AAGTTTGACAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* *
2152 AATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATTACAAACTATTT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * ** * *
2217 TGACCAAATAATGCGATTTCTCGATAATGGAATCTGAGGAAAATTGGTCAAAGGAATGGATCGTC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTC
* * * * * * *
2282 TTGAATACTCTTAGGAACCGAAGTTATGAAAGAACTCGTAAATGTTTAACCAA-TTCGGAAGTTT
131 TTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGA-CAAGTTCGGAAGTTC
* * ** * *
2346 GTCCAAGAGCCAAGAGAGAAACAATTCTTTCGTAATAAAGTTTTTAATTCAAAGACCAAAAATTG
195 GTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTG
* * *
2411 TTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGATCATGGAATGTTC-GAAAA
260 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAG-AAA
* * * * * * * * * *
2475 ATTGGTCGAGGGAATTGATCATCTTGACTACTATCAGGAATCGAAGTTATAGAAGAACTAGTAAA
324 ATTTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAA
* * * * *
2540 TGTTTGACAAGTTTG-AGAGTTTGTCCAAGAA-CAAGGAGAGAAAG
389 AGTTTGACAAGTTCGTA-TGTTCGTCCAAGAACCAA-GAGAGAAAC
* * * * *
2584 AACTCTAACGTAAAAAAGTTTTTAATTCAAAAGACCAAAAGTTATTTACAAAATAACAAACTATT
1 AATTCTCACGTAAAAAAGTATTTAATTC-AAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * *
2649 T-GACCAAATAATGCGATTTCCCGATCATGGAATCTTCTAAAAATTAGTCAAAGGAATGGATCGT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGT
* * * *
2713 CTTGGA-TACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTAACCAGTTCGGAAGTT
130 CTT-GACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTT
* **
2777 CGTCCAAGAACCAAGAGAGAAATAATTCTCTCG-AAAAAAGTTTTTAATTCAAAGACCAAAAGTT
194 CGTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * * * *
2841 GTTTACAAAATGACAAACTTTTTTGTCCAAATGATGTGATTTCTCGAGCATGGAATGTTTAGAAA
259 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAAA
** * * * *
2906 ATTTGTTGAAGGAATGGATCATCTTGAATACTCTCAAGAATCGAAGTTATAAAAGAACTCGTAAA
324 ATTTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAA
* * * * * * *
2971 GGTTTGACAAGTTTGGAAGTTTGTCCAAGAA-TAAGAGAGAAAT
389 AGTTTGACAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* * * * * *
3014 AATTCACGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTCCAAAATGAC-AACTATTA
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
*
3078 AGACCAAATGATGCGATTTCTCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTC
* * * *
3143 TTGACTACTATCAGGAATCGACGTAATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTTG
131 TTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCG
* *
3208 TCCAAGAACCAAGATAGAAAGAATTCTAATGTAAAAAAGTTTTTAATAT-AAAGACCAAAATGTT
196 TCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAAT-TCAAAGACCAAAA-GTT
* * * * * *
3272 TTTTACAAAATGGCAAATTATTTTA-ACCAAATGATGCAATTTTTCGATCATGGAATCTTCAAAA
259 GTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAA
* * * * * * *
3336 AATTGGTCAAAGGAATGGATCGCCTTGAATACTCTCGGGAATCTAAGCTATAAAAGAACTAGTAA
323 AATTTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAA
* * * * * *
3401 ATGTTT-AGCAAATTCGAAAGTTCATCCAAGAACC---AGAGAAGC
388 AAGTTTGA-CAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* * * * * *
3443 AATTCTCTCGTGAAAAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACATAATGACAAACTTTTT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * *
3508 AGTCCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGTTCGAAGGAATGGATCAT
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGA-AAAATTGGTCGAAGGAATGGATCGT
* * * * * * * **
3572 CTTGAATAATCTCAGGAACCGAAGTTATAAAATAACTCGTAAAGGTTTGACAGGTTTAGAAGTTC
130 CTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTC
* * *
3637 TTCCAAGAA-CAAGAGAGAAAGAATT-TACACGTAAATAAGTTTTTAATTCAAAGGCCAAAAGTT
195 GTCCAAGAACCAAGAGAGAAAGAATTCTA-ACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * *
3700 GTTTCCAAAATGATAAACTATTTAGACCAAATGATGCGATTTCGCGATCATGGAATGTTCAAAAA
259 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAAA
* * * * * * * * *
3765 ATTGGTCGAAGGAATGAATCGTCTTGACTACTAC-CAGGAATCGACGTAATAAAAAAACTAGTAA
324 ATTTGTCAAAGGAATGGATCGTCTTGAATACT-CTCAGGAACCGAAGTTATAAAAGAACTTGTAA
* * * * *
3829 ATGTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAAG
388 AAGTTTGACAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* * *** * * *
3874 AATTTTCACATAAAATTTTTTTTAATTTAAAGACCAAAAGTTATTTACAAAATGACAAACTATTT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * ** *
3939 AGATCAAATGAAGTGATTTCCCGGGCATGGAATGTTC-AAATAATTGGTCGAAAGAATGGATCGT
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAA-AATTGGTCGAAGGAATGGATCGT
* * * * * * * * *
4003 CTTTAATACTCTCAAGAACCGAAGTTATAAAAGAACTCGTAAATGTTTCACGAGTTCAGAAGTTT
130 CTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTC
* * * * * * **
4068 ATCAAAGAACTAATAGAGAAATAATTCTCACGTAAAGTAGTTTTTAATTCAAAGACCAAAAGTTG
195 GTCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTG
* * *
4133 CTTAGAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-AGCATGGAAT-TTCAGAAAA
260 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAAAA
* * * *
4196 -TTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTTGTAAA
325 TTTG-TCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAA
* * * *
4260 ATTTTGACTAGTTTGTATGTTCGTCCAAGAACCAAGAAAGAAAC
389 AGTTTGACAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* * * *
4304 AATGCTCATGTAAAAAAGTATTTAGTTCAAAG-CACAAAAGTTGTTTACAAAACGACAAACTATT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTATT
* * * * *
4368 AAGACCAAATGATGTGAATTCCCGATCATGGAATGTTCAAAAAATTGGTCGAAGGGATGGATCGT
65 TAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGT
* * *
4433 CTTGACTACTATCAGGAACCGAAGTTATAGAAGAACTAGTAAATGTTTGACAAGTTCGAAAGTTT
130 CTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTC
* *
4498 GTCCAATAA-CAAGGAGAGAAAGAACTCTAACGTAAAAAAAGTTTTTAATTCAAAAGACCAAAAG
195 GTCCAAGAACCAA-GAGAGAAAGAATTCTAACGT-AAAAAAGTTTTTAATTC-AAAGACCAAAAG
* * * ** *
4562 TTATTTATAAAATGACAAACTATTTTGACCAAAAAATGCGATTTCCCGATCATGGAATCTTCTA-
257 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTC-AG
* * * **
4626 AAAATTAGTCAAAGGAATGGATCGTCTTGGATACTCTCAAGAACCGAAGTTATAAAAGAACTCAT
321 AAAATTTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGT
* * * * *
4691 AAATGTTTAACCAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAC
386 AAAAGTTTGACAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* * * * *
4738 AATTCTCTCGTAAAAAAGTTTTTAATTCAAATACCTAAAGTTGTTTACAAAATGAAAAACTA-TT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * *
4802 AGACCAAATAATGCGATTTCCCGATCATGGAATGTTCGAAAATTTGGTCAAATGAATGGATCGTC
66 AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTC
* * * *
4867 TTGACCACTATCAGGAACCGAAGTTATAAATGAACTAGTAAATGTTTGACAAGTTCGGTACTTCG
131 TTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCG
* * * * *
4932 TCCAAGAACCAAGAGAGGAAGAATTCTCACGTAAAAAATTTTTTAATTTAAAGACCAAAAGTTAT
196 TCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * * *
4997 TTACAAAATGGCAAACTATTTTGGCCAAATGATGAGATTTTTCGATCATGGAATATTC-GAAAAT
261 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAAAA-
* * *
5061 TTTGTCAAAGGAATGAATTGTCTTGAATACTCTCAGGAACTGAAGTTATAAAAGAACTTGTAAAA
325 TTTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAA
* * *
5126 GTTTGACAAGTTCGTATGTTCATCCAAGAACCAAGAGGGAAAT
390 GTTTGACAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
* * *
5169 AACTCTCACGTAAATAGGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
1 AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
5222 TGATACGATC
Statistics
Matches: 4053, Mismatches: 651, Indels: 164
0.83 0.13 0.03
Matches are distributed among these distances:
423 192 0.05
424 12 0.00
425 156 0.04
427 4 0.00
428 146 0.04
429 342 0.08
430 862 0.21
431 1342 0.33
432 645 0.16
433 199 0.05
434 149 0.04
435 4 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (432 bp):
AATTCTCACGTAAAAAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
AGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTC
TTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCG
TCCAAGAACCAAGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGT
TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGATCATGGAATCTTCAGAAAAT
TTGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTGTAAAAG
TTTGACAAGTTCGTATGTTCGTCCAAGAACCAAGAGAGAAAC
Found at i:6190 original size:32 final size:32
Alignment explanation
Indices: 6149--6211 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
6139 GCCATCCATA
* *
6149 CATGTACCTGAAATATATTAATCAGCTAATTG
1 CATGTACCTGAAACACATTAATCAGCTAATTG
6181 CATGTACCTGAAACACATTAATCAGCTAATT
1 CATGTACCTGAAACACATTAATCAGCTAATT
6212 AATTTCAGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (32 bp):
CATGTACCTGAAACACATTAATCAGCTAATTG
Found at i:8975 original size:48 final size:48
Alignment explanation
Indices: 8880--8975 Score: 140
Period size: 48 Copynumber: 2.0 Consensus size: 48
8870 TGACCAAATA
* * *
8880 ATGCGATTTCTCGATCATGGAATCTTCTAAAAATTGGTCAAGGGAATG
1 ATGCGATTTCCCGATCATGGAATCTTCGAAAAATTGGTCAAGAGAATG
*
8928 ATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAA-AGAATG
1 ATGCGATTTCCCGATCATGGAATCTTCGAAAAATTGGTC-AAGAGAATG
8976 GATCGTCTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
48 41 0.95
49 2 0.05
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (48 bp):
ATGCGATTTCCCGATCATGGAATCTTCGAAAAATTGGTCAAGAGAATG
Found at i:9801 original size:215 final size:216
Alignment explanation
Indices: 8924--12616 Score: 4117
Period size: 216 Copynumber: 17.2 Consensus size: 216
8914 TGGTCAAGGG
*
8924 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAA-GAATGGATCGTCTTGAC
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTC-AAAGGAATGGATCGTCTTGAA
* * * * *
8988 CACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGTACTTCGTCCAA
65 TACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
* *
9053 GAACCAAGAGAGAAAGAATTCTCAT-GT-AAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTAC
130 GAACCAAGAGAGAAACAATTCTC-TCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
9116 ----TGACAAACTATTTAGACCA
194 AAAATGACAAACTATTTAGACCA
* * * **
9135 AATGATGCGACTTCCCAATCATGGAATCTTCGAAAAATTGGTCTCAGGAATGGATCG-CTTGAAT
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
* * * * * *
9199 ACTCTCAGGAA-CTGAAGTTATAAAAGAAGTCGTAAATGTTTAACAAGTTAGGAAGTTCATCTAA
66 ACTCTCAGGAATC-GAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
* * * *
9263 GAACCAAGAGAAAAACAATTCTCTCGTAAAAAAGTTTTTAATTTAAAGACCAACAGTTTTTTACA
130 GAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
9328 AAATGACAAACTATTTAGACCA
195 AAATGACAAACTATTTAGACCA
* *
9350 AATGATGCGATTTCCTGATCATGGAATGTTCGAAAAATTGGTCGAAA-GAATGGATCGTCTTGAC
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTC-AAAGGAATGGATCGTCTTGAA
* * * * *
9414 TACTATCAAGAATCGACGTAATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCATCCAA
65 TACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
* * * *
9479 GAACCAAGAGAGAAAGAA-----ACGTAAAAAAG-TTTTAATTTAAAGACCAAAAGTTATTTACA
130 GAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* *
9538 AAATGACAAATTATTTTGACCA
195 AAATGACAAACTATTTAGACCA
* ** * ** *
9560 AATCATGCGATTTTTCGATCATGGAATCTTCGAAAAATTGGTCAAAGGAATGGATCACCTCGAAT
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
* * *
9625 ATTCTC-GAGAATCAAAGTTATAAAAGAACTAGTAAATGTTTAACAA-TTCGGAAGTTCGTCCAA
66 ACTCTCAG-GAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
* *
9688 GAACCAAGAGAGAAGCAATTCTCTCGTAAAAAAGTTTTTAATTCAAAAACCAAAAGTTGTTTACA
130 GAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * *
9753 AAATGATAAACTTTTTAGTCCA
195 AAATGACAAACTATTTAGACCA
* * * *
9775 AATGTTGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGGTTAAAGGAATGGATCATCTTGAA
1 AATGATGCGATTTCCCGATCATGGAATGTTCGA-AAAATTGGTCAAAGGAATGGATCGTCTTGAA
* * * * *
9839 TACTCTCAGGAATTGAAGTTATAAAATAACTCGTAAAGGTTTGACAAGTTCGAAAGTTCGTCCAA
65 TACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
* ** * * * *
9904 GAA-CAAGAGAGAAACAATTCACAGGTATATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTCCA
130 GAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
*
9968 AAATGACAAACTATTAAGACCA
195 AAATGACAAACTATTTAGACCA
* * *
9990 AATGATGCGA-TTCCCTGATCATGGAATGTTCGAAAAATTGGTCAATGGAATGGATAGTCTTGAC
1 AATGATGCGATTTCCC-GATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAA
* * * *
10054 TACTATTAGGAATCGACGTAATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
65 TACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
* * * * **
10119 GAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTTAAAAACCAAAAGTTACTTACA
130 GAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * *
10184 AAATGGCAAACTATTTTGATCA
195 AAATGACAAACTATTTAGACCA
* ** * * * * * * *
10206 AATGATACGATTTTTCGATCACGGAATATTCAAAAAATTTGTCGAAGGAATGGATTGTCTTAAAT
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
* * * * * **
10271 ACTCTCAGGAA-CTGAAGTTATAAAAGAACTTGTAAAAGTTCGACAAGTTCGTATGTTAATCCAA
66 ACTCTCAGGAATC-GAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
* * * * *
10335 GAACCAAGAGGGAAACAACTCTCAT-GTAAATAAGTATTTAATTCAAAAACCAAAAGTTGTTTAC
130 GAACCAAGAGAGAAACAATTCTC-TCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
*
10399 AAAATGACAAACTATTTAGATCA
194 AAAATGACAAACTATTTAGACCA
* * * * * *
10422 AATGAAGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTCGAAA-GAATGGATCATCTTTAA
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTC-AAAGGAATGGATCGTCTTGAA
* * * ** * *
10486 TACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTCA-AGAGTTCAAAAGTTCATCAA
65 TACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACA-AGTTCGGAAGTTCGTCCA
* * * * * ** *
10550 AGAACTAATAGAGAAACAATTTTCACGTAAAATAGTTTTTAATTCAAAGACTGAAAGTTATTTAC
129 AGAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* *
10615 AAAATGACAAACAAATTAGACCA
194 AAAATGACAAACTATTTAGACCA
* * * * * *
10638 AATGATGCGATTTCTC-AGCATGGAAT-TTCAAAAAATTGCTCGAATGAATGGATCGTCTTGAAT
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
* * * * * * * * *
10701 ACTTTAAGGAATCAAAGTTATAAAAGAACTTGTAAAAT-TTTGACTAGTTTGTATGTTTGTCCAA
66 ACTCTCAGGAATCGAAGTTATAAAAGAACTAGT-AAATGTTTGACAAGTTCGGAAGTTCGTCCAA
* * *
10765 GAACCAAGA-AGGAAACAATGCT-TACGTAAAAAAGTATTTAGTTCAAAG-CACAAAAGTTGTTT
130 GAACCAAGAGA-GAAACAATTCTCT-CGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTT
*
10827 ACAAAATGACAAACTATTAAGACCA
192 ACAAAATGACAAACTATTTAGACCA
* * ** * *
10852 AATGATGCGAATTCTCGATCATGGAATGTTTAAAAAATTGGTCTAAGGAATGGATCGTCTTGACT
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
* * *
10917 ACTATCAGGAACCGAAGTTAT---AGAAGTAGTAAATGTTTGACAAGTTC-GAAGTTCGTCCAAG
66 ACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAG
* * ** *
10978 AA-CAAGGAGAGAAAGAACTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTATTTACA
131 AACCAA-GAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
*
11042 AAATGACAAACTATTTTGACCA
195 AAATGACAAACTATTTAGACCA
* * * * * *
11064 AATAATGTGATTTCTCGATCATGGAATCTTCAAAAAAATT-GTCAAAGGAATGGATCGTCTTAAA
1 AATGATGCGATTTCCCGATCATGGAATGTTC-GAAAAATTGGTCAAAGGAATGGATCGTCTTGAA
* * * * * *
11128 TACTCTCAGGAACCGATGTTATAAAAGAACTCGTAAATTTTTAACCAA-TTCGAAAGTTCGTCCA
65 TACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGA-CAAGTTCGGAAGTTCGTCCA
*
11192 AGAACCAAGAGAGAAACAATTCTCTTGTAAAAAAGTTTTTAATTCAAATG-CCAAAAGTTGTTTA
129 AGAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAA-GACCAAAAGTTGTTTA
11256 CAAAATGACAAACTATTTAGACCA
193 CAAAATGACAAACTATTTAGACCA
* * **
11280 AATGATGCGATTTCCCAATCATGTAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGACC
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
* * * * * *
11345 ACTATCAGGAA-CTGCAGTTATAAAAGAATTAGTAAATGTTTAACAAGTTCGGTACTTCGTCCAA
66 ACTCTCAGGAATC-GAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAA
* * * *
11409 GAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGGCCAAAAGTTATTTACA
130 GAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
*
11474 AAATAACAAACTATTTAGACCA
195 AAATGACAAACTATTTAGACCA
* ** * *
11496 AATGATGCGATTTCCTGATCATGGAAACTTCAAAAAATTGGTCTAAGGAATGGATCGTCTTGAAT
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
* * * * * * *
11561 ACTCTTAGGAA-CAGATGTTATAAAAGTAGTCA-TAAATGTTTAACAAGTTAGGAAGTTCGTCTA
66 ACTCTCAGGAATC-GAAGTTATAAAAGAACT-AGTAAATGTTTGACAAGTTCGGAAGTTCGTCCA
* * *
11624 AGAACCAAGAGAGAAACAATTCTCTTGTAAAAAAGTTTTTAATTTAAAGACCAAAAGTTATTTAC
129 AGAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
*
11689 AAAATGGA-AAATTAGTTT-GACCA
194 AAAAT-GACAAACTA-TTTAGACCA
** * *
11712 AATGATGCGATTTTTCGATCATGGAATCTTCGAAAAATTGGTCAAAGGAATGGATCGCCTTGAAT
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
* * **
11777 ACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTAACAAATTCAAAAGTTCGTCCAAG
66 ACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAG
*
11842 AACCAAGAGAGAAGCAATTCTCTCGT-AAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
131 AACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* *
11906 AATGACAAACTTTTTAGTCCA
196 AATGACAAACTATTTAGACCA
* * ** *
11927 AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTTGAAGGAATGGATCATCTTGAAT
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
* * * ** *
11992 ACTCTCAGGAACCGAAGTTATAAAAGTACTCGTAAAAATTTGACAAGTTCGGAAGTTCGTCTAAG
66 ACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAG
* * * * * *
12057 AA-CAAGGGAGAAACAATTCACACATAAAAAAGTTTTTAATTGAAAGACCAAAAGTTGTTTCCAA
131 AACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
*
12121 AATGACAAACTATTAAGACCA
196 AATGACAAACTATTTAGACCA
* * ** * *
12142 AATGATGCGATTTCTCGATCATGGAAT-TTACGAGAAATTGGTTGAAGGAATGAATCATCTTGAA
1 AATGATGCGATTTCCCGATCATGGAATGTT-CGAAAAATTGGTCAAAGGAATGGATCGTCTTGAA
* * * * * * * * *
12206 TACTCACAGGAA-CCAATGTTATAGAGGAACTCGTGAATGTTTGACAAGTTCAGAATTTCATCCA
65 TACTCTCAGGAATCGAA-GTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCA
** ** * * * *
12270 AGAAGAAAGAGAGAAACAGCTCTCACGTAAACAAGTTTTTAATTTAAAGACCAAAAGTTCTTTAC
129 AGAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * *
12335 GAAATGACAAACTTTTTA-AACA
194 AAAATGACAAACTATTTAGACCA
* * * * ** * * *
12357 AATGATGTGA-TACCCGAAGCATGGAATGTTCGAAAGAA-TGCTTGAAGGAAGGGGTTGTCTTGA
1 AATGATGCGATTTCCCG-ATCATGGAATGTTCGAAA-AATTGGTCAAAGGAATGGATCGTCTTGA
* * * * * * * *
12420 ATACTTTAAAGGAATCAAAGTTATAAAAGAACTCA-TAAATGTTTGATAGGTTCGAAATTTCATC
64 ATACTCT-CAGGAATCGAAGTTATAAAAGAACT-AGTAAATGTTTGACAAGTTCGGAAGTTCGTC
* * * * * * * * *
12484 AAAGAGCCAATAGACAAAAAAATCT-TATGTAAAAAAGTTTTTAATTCAAAGACCGAAAGTAGTT
127 CAAGAACCAAGAGAGAAACAATTCTCT-CGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTT
* *
12548 TACAAAATGACAAATTATTTTGACCA
191 TACAAAATGACAAACTATTTAGACCA
12574 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTC
1 AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTC
12617 GAAGAA
Statistics
Matches: 2932, Mismatches: 472, Indels: 150
0.82 0.13 0.04
Matches are distributed among these distances:
209 37 0.01
210 220 0.08
211 96 0.03
212 150 0.05
213 31 0.01
214 205 0.07
215 808 0.28
216 1328 0.45
217 52 0.02
218 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
AATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAAT
ACTCTCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAG
AACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
AATGACAAACTATTTAGACCA
Done.