genome.fa.s11617.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011617.1 Kokia drynarioides strain JFW-HI SEQ_126607, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128244

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532--605	15	4.9	15	79	0	85	18	16	24	40	1.90
540--605	30	2.2	30	94	0	114	16	18	24	40	1.90
638--700	17	3.7	17	89	0	90	52	3	0	44	1.17
1598--1639	10	4.3	10	82	14	52	78	0	21	0	0.75
1598--1623	13	2.0	13	100	0	52	84	0	15	0	0.62
2442--2500	18	3.2	18	83	11	75	77	1	18	1	0.93
2735--2942	114	1.8	114	87	0	308	21	25	20	33	1.97
3139--3454	49	6.4	49	73	7	241	22	25	17	35	1.95
3146--3351	98	2.1	98	88	0	304	21	24	18	34	1.96
3146--3436	98	3.0	97	83	3	287	21	25	17	35	1.95
3139--3454	147	2.1	147	83	2	393	22	25	17	35	1.95
3881--4092	113	1.9	116	83	3	286	41	10	19	29	1.84
4197--4471	96	2.9	96	85	1	327	33	15	26	25	1.95
4416--4904	109	4.5	108	71	12	324	33	17	25	24	1.96
4595--4792	95	2.1	96	86	3	276	34	16	24	24	1.95
4525--4904	208	1.8	210	86	3	552	33	16	25	24	1.96
6764--6842	28	2.9	26	77	18	81	21	12	2	63	1.41
17494--17788	147	2.0	147	95	0	536	38	22	13	25	1.91
30430--30483	18	2.9	18	81	13	56	35	1	3	59	1.26
37649--37746	49	2.0	49	97	0	187	43	10	15	30	1.79
38355--38386	12	2.6	13	85	14	50	75	0	0	25	0.81
38467--38523	17	3.2	18	87	5	80	63	0	3	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38467--38523	26	2.1	28	87	6	82	63	0	3	33	1.12
38467--38523	9	6.3	9	87	6	80	63	0	3	33	1.12
38653--38700	12	3.9	12	86	10	62	58	2	0	39	1.10
39126--39177	20	2.6	20	85	11	63	32	0	17	50	1.47
39149--39190	21	2.0	21	81	9	50	33	0	16	50	1.46
44301--44339	20	2.0	20	90	10	62	61	0	2	35	1.10
44302--44355	21	2.7	20	82	8	65	62	0	1	35	1.06
44471--44516	23	2.0	23	83	8	58	45	0	26	28	1.54
45283--45353	31	2.3	31	85	9	92	29	18	12	39	1.88
45515--45567	13	4.0	13	80	4	52	49	3	0	47	1.19
45513--45570	26	2.2	25	79	8	62	50	3	0	46	1.18
45676--45750	9	8.1	9	70	16	55	32	5	1	61	1.27
45676--45705	10	3.1	10	95	4	53	30	0	0	70	0.88
46397--46456	25	2.3	25	80	5	66	16	11	11	60	1.60
53829--54047	86	2.6	82	81	7	237	39	16	10	34	1.82
54166--54215	19	2.6	19	81	6	57	62	4	4	30	1.32
54148--54234	27	3.2	26	80	6	93	64	3	4	27	1.29
54317--54368	10	5.4	9	78	17	52	76	1	1	19	0.97
54324--54369	19	2.4	19	79	17	51	76	2	0	21	0.90
54383--54446	21	3.0	21	77	13	69	26	7	0	65	1.19
54389--54532	10	14.4	10	68	12	73	26	5	1	66	1.21
54432--54503	29	2.5	29	84	8	85	27	4	2	65	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54410--54513	39	2.6	39	76	13	97	26	5	1	65	1.26
54451--54539	29	3.1	29	75	12	76	28	4	1	66	1.18
55193--55266	29	2.5	29	84	6	87	44	1	2	51	1.24
55260--55291	16	1.9	17	93	6	57	46	0	0	53	1.00
55987--56039	26	2.1	26	82	10	65	33	1	3	60	1.26
56183--56230	19	2.6	19	83	3	62	68	4	0	27	1.07
56183--56249	9	7.2	9	74	17	57	67	5	0	26	1.14
56183--56253	26	2.6	28	80	13	76	66	5	0	28	1.14
56689--56736	24	2.0	24	83	0	60	27	18	27	27	1.98
56853--56902	27	2.0	25	84	11	66	40	24	2	34	1.66
57680--57742	24	2.6	24	82	0	81	26	14	11	47	1.77
63259--63309	23	2.2	23	78	0	57	21	9	7	60	1.53
72148--72181	16	2.2	16	89	5	52	26	8	14	50	1.72
73659--73719	24	2.5	24	86	0	95	50	3	14	31	1.59
77057--77101	15	3.2	15	78	18	51	2	35	0	62	1.08
96616--96655	15	2.5	15	88	12	53	62	0	35	2	1.09
96627--96670	23	2.0	20	83	16	52	65	0	34	0	0.93
97122--97166	17	2.6	17	85	3	54	17	20	17	44	1.87
97104--97166	18	3.6	18	76	4	56	17	15	17	49	1.80
101291--101329	15	2.7	14	84	15	53	46	2	2	48	1.29
101404--101507	49	2.1	50	92	1	174	35	3	9	50	1.53
104125--104165	20	2.0	20	100	0	82	41	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106774--107144	183	2.0	183	92	0	607	29	20	15	35	1.93
108233--108336	50	2.1	50	90	3	165	32	7	10	49	1.66
108588--108624	17	2.2	17	90	4	58	2	5	8	83	0.88
109793--109817	13	1.9	13	100	0	50	40	0	12	48	1.40
114169--114225	29	2.0	29	82	0	69	19	26	19	35	1.95
122991--123035	22	2.0	24	82	8	58	37	6	6	48	1.56
127488--127660	23	7.4	23	79	10	147	46	19	22	11	1.82
127536--127660	46	2.7	47	83	6	164	45	20	23	11	1.82
127488--127637	69	2.1	67	83	11	178	47	19	21	12	1.81

Tables:   1

The End!