Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001162.1 Kokia drynarioides strain JFW-HI SEQ_112483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4083
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:2593 original size:20 final size:20

Alignment explanation


    Indices: 2551--2593  Score: 50
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       2541 CTAAACAAAT

                      *       * 
       2551 AAACACAAATCTAATCTTCA
          1 AAACACAAATATAATCTTAA

                 *         *    
       2571 AAACATAAATATAATGTTAA
          1 AAACACAAATATAATCTTAA

               
       2591 AAA
          1 AAA

       2594 TTATATCTAA


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26


Consensus pattern (20 bp):   
AAACACAAATATAATCTTAA

Found at i:2934 original size:6 final size:6

Alignment explanation


    Indices: 2925--2954  Score: 51
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       2915 TTCTCTTTCT

                                              
       2925 CCTTCC CCTTCC CCTTCC CCTTCC CTCTTC
          1 CCTTCC CCTTCC CCTTCC CCTTCC C-CTTC

       2955 ATTGCGTCCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6   19  0.83
   7    4  0.17

ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37


Consensus pattern (6 bp):   
CCTTCC

Done.