genome.fa.s11630.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011630.1 Kokia drynarioides strain JFW-HI SEQ_126621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38657

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1317--1736	138	3.0	138	87	2	574	40	7	6	46	1.56
1803--1842	21	1.9	21	84	0	53	47	7	2	42	1.45
3151--3237	20	4.4	19	72	7	66	31	6	12	49	1.67
3764--4185	138	3.0	138	88	3	589	41	7	5	45	1.57
6746--6864	28	4.2	28	81	4	141	38	20	12	28	1.89
7806--7862	27	2.1	27	83	6	71	26	10	31	31	1.90
7938--8159	60	3.8	62	78	10	172	36	4	25	34	1.75
7960--8227	30	9.1	29	69	15	133	36	3	26	33	1.73
8020--8217	57	3.4	61	78	11	175	39	2	24	33	1.69
9980--10056	17	4.5	17	85	0	100	57	6	1	35	1.33
9970--10056	34	2.6	34	84	0	111	55	5	1	37	1.31
10379--10782	205	2.0	205	86	1	569	22	22	19	35	1.96
10681--10890	115	1.8	115	92	0	357	23	23	18	34	1.96
10476--11140	320	2.1	320	92	0	1114	23	22	18	34	1.96
10796--11358	201	2.8	201	85	1	750	22	22	19	35	1.96
11408--11593	39	4.8	38	73	11	126	27	22	27	22	1.99
11393--11643	78	3.2	78	83	0	322	26	20	29	23	1.99
11733--11990	100	2.5	102	91	3	430	30	16	15	37	1.90
12101--12337	48	4.9	48	84	1	303	11	27	24	37	1.89
12111--12337	97	2.3	96	88	1	337	11	27	24	37	1.90
12859--13058	106	1.9	102	88	6	296	41	11	24	23	1.87
13597--13661	7	10.2	6	75	15	51	4	16	0	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13603--13661	27	2.2	26	82	14	68	5	16	0	77	0.93
13620--13665	17	2.8	16	90	3	65	2	21	0	76	0.90
13620--13661	16	2.6	15	85	14	57	2	21	0	76	0.90
15789--15838	25	2.0	25	100	0	100	40	28	12	20	1.87
19246--19349	28	3.6	28	71	14	86	35	6	25	31	1.82
19273--19408	58	2.3	59	82	6	152	38	5	23	31	1.79
19243--19408	28	5.8	28	66	18	83	36	7	24	31	1.83
19436--19643	60	3.5	57	78	15	203	35	3	25	36	1.73
19436--19646	29	7.2	29	72	12	146	35	3	26	35	1.73
21400--21476	17	4.5	17	85	0	100	57	6	1	35	1.33
21390--21476	34	2.6	34	84	0	111	55	5	1	37	1.31
37189--37515	157	2.1	158	85	0	431	29	21	23	24	1.99

Tables:   1

The End!