Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011631.1 Kokia drynarioides strain JFW-HI SEQ_126622, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4444
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.36

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:703 original size:29 final size:28

Alignment explanation


    Indices: 663--718  Score: 71
    Period size: 29  Copynumber: 2.0  Consensus size: 28

        653 TTTAAAGGTA

                                          
        663 AAAAATTAAATTTTACTT-TTTATAATAGT
          1 AAAAATTAAATTTTA-TTATTT-TAATAGT

                                        
        692 AAAAA-TATAATTTTATTATTTTAATAG
          1 AAAAATTA-AATTTTATTATTTTAATAG

        719 CTTATATCTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 5
        0.83            0.00        0.17

Matches are distributed among these distances:
  28   10  0.40
  29   15  0.60

ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48


Consensus pattern (28 bp):   
AAAAATTAAATTTTATTATTTTAATAGT
Done.