Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011636.1 Kokia drynarioides strain JFW-HI SEQ_126627, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8102
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32


Found at i:2246 original size:103 final size:103

Alignment explanation


    Indices: 2066--2370  Score: 506
    Period size: 103  Copynumber: 3.0  Consensus size: 103

       2056 AATTAACCTT

                                            *            *    *              
       2066 GCATTTGC-T-TCTCTTAGAAACTTGTAGGCAGAGTAGTAGTACTACTTTTCAGTGCGAAAGCGT
          1 GCATTTGCTTCTCTCTTAGAAACTTGTAGG--TAG-AGTAGTACTCCTTTACAGTGCGAAAGCGT

                                                     
       2129 GTGGGACATTCATATTGAAAATAGTTGTACCACTTTTGAGA
         63 GTGGGACATTCATATTGAAAATAGTTGTACCACTTTTGAGA

                                                                             
       2170 GCATTTGCTTCTCTCTTAGAAACTTGTAGGTAGAGTAGTACTCCTTTACAGTGCGAAAGCGTGTG
          1 GCATTTGCTTCTCTCTTAGAAACTTGTAGGTAGAGTAGTACTCCTTTACAGTGCGAAAGCGTGTG

                                                  
       2235 GGACATTCATATTGAAAATAGTTGTACCACTTTTGAGA
         66 GGACATTCATATTGAAAATAGTTGTACCACTTTTGAGA

                                                                  *     *    
       2273 GCATTTGCTTCTCTCTTAGAAACTTGTAGGTAGAGTAGTACTCCTTTACAGTGCAAAAGCATGTG
          1 GCATTTGCTTCTCTCTTAGAAACTTGTAGGTAGAGTAGTACTCCTTTACAGTGCGAAAGCGTGTG

                *    *                       
       2338 GGACTTTCACATTGAAAATAGTTGTACCACTTT
         66 GGACATTCATATTGAAAATAGTTGTACCACTTT

       2371 GGAAACCAAT


Statistics
Matches: 192,  Mismatches: 7, Indels: 5
        0.94            0.03        0.02

Matches are distributed among these distances:
 103  162  0.84
 104   10  0.05
 105    1  0.01
 106   19  0.10

ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34


Consensus pattern (103 bp):   
GCATTTGCTTCTCTCTTAGAAACTTGTAGGTAGAGTAGTACTCCTTTACAGTGCGAAAGCGTGTG
GGACATTCATATTGAAAATAGTTGTACCACTTTTGAGA
Done.