Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011639.1 Kokia drynarioides strain JFW-HI SEQ_126630, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2393
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.29

Warning! 89 characters in sequence are not A, C, G, or T


Found at i:1990 original size:18 final size:16

Alignment explanation


    Indices: 1947--1978  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       1937 GAAATAAATA

                *           
       1947 AATACCCAAAATACCT
          1 AATAACCAAAATACCT

                            
       1963 AATAACCAAAATACCT
          1 AATAACCAAAATACCT

       1979 TCCATAACCA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19


Consensus pattern (16 bp):   
AATAACCAAAATACCT
Done.