genome.fa.s11641.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011641.1 Kokia drynarioides strain JFW-HI SEQ_126632, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  197057

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1763--1812	24	2.0	25	84	3	66	52	14	24	10	1.71
7695--8340	122	5.3	121	89	1	923	41	18	18	21	1.91
9307--9336	15	1.9	16	93	6	53	63	0	0	36	0.95
10204--10384	30	6.1	29	81	3	184	36	28	1	34	1.65
10201--10384	60	3.1	59	83	4	219	36	28	1	34	1.65
27536--27561	7	3.7	7	100	0	52	15	0	0	84	0.62
30895--30979	21	4.1	19	79	19	82	60	5	0	34	1.21
34395--34435	16	2.6	16	84	3	57	41	4	4	48	1.46
34860--34914	20	2.8	20	100	0	110	18	12	14	54	1.71
42471--43047	291	2.0	291	98	0	1109	29	19	20	29	1.97
79600--79680	30	2.9	28	73	10	83	18	13	25	41	1.87
79842--79899	30	1.9	30	85	0	80	18	15	31	34	1.93
96940--96978	19	2.0	20	85	5	53	51	5	5	38	1.46
107176--107336	45	3.6	45	84	5	218	37	12	19	29	1.89
133049--133300	56	4.5	56	89	3	373	22	20	23	34	1.97
133000--133313	28	11.2	28	77	8	264	23	19	22	34	1.97
133260--133354	28	3.4	28	78	8	86	25	16	25	32	1.96
133049--133354	112	2.7	110	80	9	336	23	19	23	33	1.97
133288--133368	28	2.9	28	78	14	87	23	16	25	34	1.95
145688--145728	15	2.9	15	85	7	50	65	2	29	2	1.18
149363--149404	21	2.0	21	100	0	84	38	14	9	38	1.78
152120--152322	82	2.5	81	87	2	289	21	15	26	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156701--156924	82	2.7	82	85	5	292	24	16	25	33	1.96
161747--161790	22	2.0	22	83	16	56	77	6	4	11	1.11
166854--166908	3	18.3	3	100	0	110	32	0	0	67	0.91
166950--166995	2	23.0	2	81	0	56	43	2	2	52	1.25
168181--168947	78	9.8	78	81	2	610	27	19	28	24	1.98
168220--168947	156	4.7	156	81	0	749	27	19	28	24	1.99
168298--168909	39	15.7	39	68	13	265	27	19	28	23	1.99
168181--168943	39	19.6	38	68	7	258	27	19	28	24	1.99
169325--169353	13	2.3	13	94	5	51	24	10	20	44	1.82
175484--175734	30	8.5	29	80	7	231	39	1	23	35	1.63
175484--175734	60	4.2	59	82	5	267	39	1	23	35	1.63
175484--175732	88	2.8	87	80	8	261	39	1	23	35	1.63
177483--177673	95	2.0	96	84	5	253	33	13	22	30	1.93
178126--178484	60	6.2	60	83	8	447	27	5	32	35	1.79
178027--178405	89	4.4	87	74	14	277	29	5	31	32	1.80
177959--178481	29	18.0	27	67	21	183	29	5	31	33	1.80
178241--178455	109	2.0	109	88	6	312	27	4	29	38	1.77
179695--179733	7	5.9	7	82	11	55	43	0	0	56	0.99
179695--179740	15	3.1	15	81	6	58	43	0	0	56	0.99
179810--179851	18	2.3	19	91	4	68	47	2	4	45	1.36
180365--180434	15	4.7	15	78	7	79	20	11	25	42	1.85
180424--180464	13	3.2	14	80	19	54	17	7	19	56	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180466--180521	17	3.4	16	85	7	76	53	1	0	44	1.11
182397--182439	22	2.0	22	81	9	52	41	0	9	48	1.35
184222--184254	15	2.3	15	89	5	50	39	3	0	57	1.14
186226--186273	23	2.1	23	96	0	87	27	8	6	58	1.51
191485--191634	47	3.2	47	68	12	146	20	13	10	56	1.66
191485--191632	48	3.1	48	66	16	146	20	13	10	55	1.67
191480--191666	93	2.0	93	100	0	374	20	12	9	57	1.63
191480--191620	46	3.1	45	66	13	133	21	14	9	53	1.70
192778--192860	41	2.0	41	92	0	139	36	22	16	24	1.95
193143--193192	21	2.3	23	86	6	68	74	20	0	6	1.03
193186--193258	24	3.2	23	75	13	69	68	21	5	4	1.27
193209--193269	22	2.9	21	85	7	79	67	26	4	1	1.20
193194--193265	24	3.1	23	80	13	85	63	25	6	4	1.37
193938--193981	15	2.9	15	79	3	52	63	2	0	34	1.07
196557--196610	21	2.6	21	75	0	63	33	25	11	29	1.91

Tables:   1

The End!