Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001165.1 Kokia drynarioides strain JFW-HI SEQ_112490, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 773

Length: 1289
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40


Found at i:735 original size:26 final size:26

Alignment explanation


    Indices: 685--741  Score: 64
    Period size: 26  Copynumber: 2.2  Consensus size: 26

        675 ATCCAAATTG

                                     *
        685 TAAATAATTATATTAATTATATATGT
          1 TAAATAATTATATTAATTATATATGA

                                  *     
        711 TAAATAA-TA-ATTACATATATTTATGA
          1 TAAATAATTATATTA-AT-TATATATGA

                 
        737 TAAAT
          1 TAAAT

        742 CACTAACCCA


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  24    4  0.15
  25    4  0.15
  26   19  0.70

ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46


Consensus pattern (26 bp):   
TAAATAATTATATTAATTATATATGA
Done.