genome.fa.s11654.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011654.1 Kokia drynarioides strain JFW-HI SEQ_126646, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184726

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703--749	12	3.7	12	81	18	51	53	2	4	40	1.32
823--865	3	14.3	3	90	0	68	60	0	0	39	0.97
826--876	15	3.4	15	86	0	66	56	0	0	43	0.99
1868--2087	29	7.5	29	81	7	257	33	30	3	32	1.75
1866--2143	59	4.7	59	84	4	303	33	30	3	32	1.76
1868--2117	88	2.8	87	83	7	292	33	30	4	32	1.76
1899--2118	29	7.5	29	76	13	141	33	30	4	32	1.77
2376--2562	96	1.9	96	83	8	238	32	18	12	36	1.89
3610--3681	29	2.4	30	79	4	83	36	2	9	51	1.49
5794--5874	39	2.0	40	88	2	119	32	17	19	30	1.95
6192--6272	39	2.0	40	88	2	119	32	17	19	30	1.95
7945--8004	28	2.1	28	100	0	120	40	6	18	35	1.77
11080--11163	39	2.2	39	78	10	91	27	19	21	32	1.97
11097--11176	39	2.0	40	90	2	126	30	17	21	31	1.96
12270--12352	35	2.4	35	80	8	98	45	2	1	50	1.22
12814--12839	12	2.2	12	100	0	52	69	7	0	23	1.14
12822--12857	18	1.9	18	88	5	54	72	13	0	13	1.13
13303--13342	20	2.0	21	85	5	55	72	5	2	20	1.15
14142--14174	7	4.7	7	100	0	66	60	0	0	39	0.97
16764--16821	29	2.0	28	86	3	80	43	31	0	25	1.55
17169--17308	43	3.3	43	97	0	262	42	14	13	29	1.83
18373--18424	20	2.5	20	76	14	61	50	7	7	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19025--19086	32	1.9	33	90	6	101	67	11	0	20	1.21
19058--19100	22	1.9	23	85	4	61	69	11	0	18	1.17
20426--20478	25	2.2	25	86	10	74	62	1	7	28	1.33
20650--20684	18	2.0	17	94	5	61	74	2	0	22	0.95
20660--20705	14	3.3	13	85	11	56	63	6	6	23	1.43
22662--22958	101	3.0	99	76	9	320	25	17	19	38	1.93
22789--22942	51	3.1	50	73	10	161	25	16	19	37	1.93
22696--22996	101	3.0	101	77	7	237	26	18	18	35	1.94
23614--23735	20	6.1	20	81	3	138	50	9	18	22	1.75
23601--23737	40	3.4	40	78	4	141	50	10	16	22	1.75
34772--34842	28	2.6	28	88	2	99	33	22	19	23	1.97
36900--36945	14	3.3	13	85	11	56	63	6	6	23	1.43
39010--39042	16	2.1	16	100	0	66	30	15	18	36	1.91
39423--39499	29	2.6	29	87	2	109	45	0	16	37	1.48
39430--39576	30	4.9	30	81	7	138	37	1	23	37	1.64
39428--39647	30	7.6	30	71	15	115	36	1	25	36	1.67
39533--39636	52	2.0	52	83	3	129	33	2	29	33	1.73
39517--39700	82	2.2	84	82	6	225	35	3	27	33	1.73
39520--39747	83	2.7	82	80	7	221	37	3	26	32	1.72
39589--39765	30	6.1	29	74	13	98	40	2	24	32	1.67
41730--41896	84	2.0	85	84	1	219	23	21	16	38	1.93
41662--42217	207	2.7	208	85	1	731	23	19	16	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41938--42103	85	2.0	85	85	0	224	24	18	15	40	1.90
42128--42351	121	1.8	121	85	2	313	24	19	16	40	1.91
53650--53955	29	10.8	29	72	12	140	37	2	24	34	1.68
53673--53989	29	11.0	29	68	15	131	36	2	25	34	1.70
55537--55569	16	1.9	17	88	11	50	30	0	6	63	1.18
61043--61229	25	7.4	25	82	0	212	26	19	21	31	1.98
63406--63497	24	3.8	24	86	0	112	31	29	17	21	1.96
71651--71675	13	1.9	13	100	0	50	48	0	20	32	1.50
71841--71874	16	2.0	18	88	11	54	41	5	5	47	1.52
72094--72136	15	2.9	15	79	10	52	16	9	0	74	1.06
73219--73480	39	6.7	39	80	1	292	41	20	14	23	1.89
73219--73480	78	3.4	78	85	1	328	41	20	14	23	1.89
73219--73518	116	2.6	117	81	2	289	40	19	16	24	1.91
75282--75370	44	2.0	44	100	0	178	24	32	24	17	1.97
80374--80480	39	2.7	39	83	0	133	43	12	14	29	1.81
80476--80547	31	2.3	31	90	0	117	40	18	15	26	1.90
91514--91800	36	8.0	36	86	3	353	39	24	13	22	1.90
91514--91800	108	2.7	108	88	1	414	39	24	13	22	1.90
98976--99190	43	5.0	43	90	0	331	32	21	8	37	1.84
102516--102560	18	2.5	18	79	13	56	26	2	0	71	0.98
104481--104563	43	2.0	42	83	7	105	50	3	7	38	1.47
110200--110403	94	2.1	95	82	7	245	58	2	14	24	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110382--110419	4	9.8	4	83	16	53	78	0	0	21	0.74
110381--110432	12	4.2	12	82	12	61	76	0	1	21	0.87
112170--112979	100	8.0	101	74	8	492	27	17	17	37	1.92
112201--112978	200	3.9	200	76	8	553	27	17	17	37	1.92
112748--113017	50	5.3	50	72	9	165	28	17	16	37	1.92
112201--112984	50	15.5	50	67	13	286	27	17	17	37	1.92
118186--118220	3	11.7	3	100	0	70	65	0	0	34	0.93
120212--120271	19	3.0	20	81	11	79	53	1	0	45	1.10
122246--122312	33	2.0	33	100	0	134	46	5	5	41	1.53
124905--124944	22	1.9	20	90	10	62	75	5	7	12	1.18
135808--135898	37	2.5	37	87	0	128	36	32	19	10	1.87
135865--135937	21	3.5	21	94	0	119	43	31	19	5	1.73
142649--142773	37	3.4	37	86	0	151	39	28	18	13	1.89
151966--151990	9	2.8	9	100	0	50	40	0	0	60	0.97
155294--155326	17	1.9	18	88	11	52	42	12	0	45	1.41
164029--164374	191	1.8	192	90	0	559	28	19	24	27	1.99
166822--166877	27	2.1	27	86	0	76	42	14	10	32	1.80
173123--173149	13	2.1	13	100	0	54	48	14	0	37	1.45
176831--177147	158	2.0	158	96	1	582	16	23	18	40	1.91
178782--178864	24	3.4	23	78	8	85	34	25	18	21	1.96
181310--181335	12	2.2	12	100	0	52	69	7	0	23	1.14
181312--181391	41	2.0	41	89	0	124	63	12	3	20	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183189--183237	18	2.7	18	90	3	71	32	18	26	22	1.97

Tables:   1

The End!