Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011657.1 Kokia drynarioides strain JFW-HI SEQ_126649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 145170
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Warning! 27 characters in sequence are not A, C, G, or T
Found at i:499 original size:18 final size:18
Alignment explanation
Indices: 476--512 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
466 TTTGTGATCA
476 AAATTGAAAGTGAAAGTG
1 AAATTGAAAGTGAAAGTG
* *
494 AAATTGGAATTGAAAGTG
1 AAATTGAAAGTGAAAGTG
512 A
1 A
513 TATGAATTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24
Consensus pattern (18 bp):
AAATTGAAAGTGAAAGTG
Found at i:3435 original size:24 final size:24
Alignment explanation
Indices: 3391--3437 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
3381 AAAATTCAAA
* *
3391 ATATTTATAAAAATTTCAAAATTT
1 ATATTTATAAAAATATAAAAATTT
3415 ATATTTA-AAAATATATAAAAATT
1 ATATTTATAAAA-ATATAAAAATT
3438 CTAAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
ATATTTATAAAAATATAAAAATTT
Found at i:3459 original size:22 final size:22
Alignment explanation
Indices: 3431--3472 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
3421 AAAAATATAT
3431 AAAAA-TTCTAAAATATATAAGA
1 AAAAATTTCTAAAATA-ATAAGA
3453 AAAAATTTCTAAAATAATAA
1 AAAAATTTCTAAAATAATAA
3473 TTTTTGGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAAATTTCTAAAATAATAAGA
Found at i:3901 original size:5 final size:5
Alignment explanation
Indices: 3891--3922 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
3881 ATTGAAAGTG
*
3891 TAATA TAATA TAATA TAGTA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TA
3923 TTCATACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:12104 original size:38 final size:38
Alignment explanation
Indices: 12061--12165 Score: 133
Period size: 38 Copynumber: 2.8 Consensus size: 38
12051 CCAGCACAAA
**
12061 ACCTACTAGGCACAAAGCCTGATAAACACTGGA-ACAT
1 ACCTACTAGGCACAAAGCCCAATAAACACTGGACACAT
*
12098 AGCCTACTAGGCACAAAGCCCAATAAACA-TTGACACAT
1 A-CCTACTAGGCACAAAGCCCAATAAACACTGGACACAT
* *
12136 ACTCTGCTAGGCAAAAAGCCCAATAAACAC
1 AC-CTACTAGGCACAAAGCCCAATAAACAC
12166 CGTATGATCT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
37 5 0.08
38 54 0.92
ACGTcount: A:0.42, C:0.29, G:0.14, T:0.15
Consensus pattern (38 bp):
ACCTACTAGGCACAAAGCCCAATAAACACTGGACACAT
Found at i:13792 original size:4 final size:4
Alignment explanation
Indices: 13783--13816 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
13773 ATTATTATTA
13783 TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TT
1 TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TT
13817 TACCTTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53
Consensus pattern (4 bp):
TTAC
Found at i:17380 original size:14 final size:14
Alignment explanation
Indices: 17361--17390 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
17351 AGGAGCTCAA
17361 AAGGCTTCGATGAT
1 AAGGCTTCGATGAT
17375 AAGGCTTCGATGAT
1 AAGGCTTCGATGAT
17389 AA
1 AA
17391 CCTAATCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (14 bp):
AAGGCTTCGATGAT
Found at i:18040 original size:14 final size:13
Alignment explanation
Indices: 18021--18054 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
18011 ATATACTAAA
18021 TATTTTATTTATTT
1 TATTTTA-TTATTT
18035 TATTTTATTATTT
1 TATTTTATTATTT
18048 TAATTTT
1 T-ATTTT
18055 TTAAGTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TATTTTATTATTT
Found at i:21939 original size:22 final size:22
Alignment explanation
Indices: 21891--21960 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 22
21881 TTTTGCAAGT
* * *
21891 TTTTGGTGCTATTGTTGGTGCTG
1 TTTTGGTGCT-TTTTTTGTGTTG
21914 -TTTGGTGCTTTTTTTGTGTTG
1 TTTTGGTGCTTTTTTTGTGTTG
* *
21935 TTTTGATG-TTGTTTTGTGTTG
1 TTTTGGTGCTTTTTTTGTGTTG
21956 TTTTG
1 TTTTG
21961 ATCTTTATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 26 0.63
22 15 0.37
ACGTcount: A:0.03, C:0.04, G:0.30, T:0.63
Consensus pattern (22 bp):
TTTTGGTGCTTTTTTTGTGTTG
Found at i:21944 original size:11 final size:10
Alignment explanation
Indices: 21925--21960 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
21915 TTGGTGCTTT
21925 TTTTGTGTTG
1 TTTTGTGTTG
21935 TTTTGATGTTG
1 TTTTG-TGTTG
21946 TTTTGTGTTG
1 TTTTGTGTTG
21956 TTTTG
1 TTTTG
21961 ATCTTTATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.03, C:0.00, G:0.28, T:0.69
Consensus pattern (10 bp):
TTTTGTGTTG
Found at i:36916 original size:19 final size:19
Alignment explanation
Indices: 36892--36930 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
36882 AGAGGATAGA
36892 TTAACTCGGGGGTGAACAT
1 TTAACTCGGGGGTGAACAT
36911 TTAACTCGGGGGTGAACAT
1 TTAACTCGGGGGTGAACAT
36930 T
1 T
36931 CAGGTGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (19 bp):
TTAACTCGGGGGTGAACAT
Found at i:39073 original size:31 final size:32
Alignment explanation
Indices: 39011--39077 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
39001 TAAAATAAGG
* *
39011 TTTTAGGTTCCATAAAAGTTTGAGAAAAAAAA
1 TTTTAAGTCCCATAAAAGTTTGAGAAAAAAAA
39043 TTTTAAGTCCCATAAAAG-TTG-GTAAAAAAAA
1 TTTTAAGTCCCATAAAAGTTTGAG-AAAAAAAA
39074 TTTT
1 TTTT
39078 GGGTTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 1 0.03
31 15 0.47
32 16 0.50
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.34
Consensus pattern (32 bp):
TTTTAAGTCCCATAAAAGTTTGAGAAAAAAAA
Found at i:41565 original size:16 final size:17
Alignment explanation
Indices: 41534--41587 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
41524 TATATATTTA
41534 TAATAAATATTTAAAAT
1 TAATAAATATTTAAAAT
*
41551 TAATAATTA-TTAAAAT
1 TAATAAATATTTAAAAT
* *
41567 CT-ATAAAAATTTAAATT
1 -TAATAAATATTTAAAAT
41584 TAAT
1 TAAT
41588 GATAATATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
16 13 0.43
17 17 0.57
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAAATATTTAAAAT
Found at i:41573 original size:33 final size:34
Alignment explanation
Indices: 41536--41606 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
41526 TATATTTATA
* * *
41536 ATAAATATTTAAAATTAATAATTAT-TAAAATCT
1 ATAAAAATTTAAAATTAATAATAATATAAAATAT
* *
41569 ATAAAAATTTAAATTTAATGATAATATAAAATAT
1 ATAAAAATTTAAAATTAATAATAATATAAAATAT
41603 ATAA
1 ATAA
41607 TCACATAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 21 0.66
34 11 0.34
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (34 bp):
ATAAAAATTTAAAATTAATAATAATATAAAATAT
Found at i:42459 original size:24 final size:23
Alignment explanation
Indices: 42409--42459 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
42399 TTTCAAAACG
*
42409 TAATAAATAAGTATATTAAATACA
1 TAATAAATAAG-ATATTAAATAAA
42433 TAATAAATAA-ATATTAATATTAAA
1 TAATAAATAAGATATTAA-A-TAAA
42457 TAA
1 TAA
42460 AAGTAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 7 0.29
23 1 0.04
24 16 0.67
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (23 bp):
TAATAAATAAGATATTAAATAAA
Found at i:43545 original size:29 final size:28
Alignment explanation
Indices: 43512--43610 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 28
43502 CACCTGAATG
*
43512 TTTCCAAAATTGCGTTTGACCCTTAAACT
1 TTTCCAAAATTGCCTTT-ACCCTTAAACT
*
43541 TTTCCAAAATTGCACTTTAACCTTAAACT
1 TTTCCAAAATTGC-CTTTACCCTTAAACT
* ** *
43570 TTTCCAAAAATGAATTTTAACCCCTAAACT
1 TTTCCAAAATTG-CCTTT-ACCCTTAAACT
43600 TTTCCAAAATT
1 TTTCCAAAATT
43611 ACATTTTAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
29 37 0.63
30 22 0.37
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.37
Consensus pattern (28 bp):
TTTCCAAAATTGCCTTTACCCTTAAACT
Found at i:43560 original size:59 final size:60
Alignment explanation
Indices: 43473--43630 Score: 160
Period size: 59 Copynumber: 2.7 Consensus size: 60
43463 CTCAAGAGGT
** * * * * * * *
43473 CCCTAAACTTTTTAAAAATCATATTTTAACACCTGAA-TGTTTCCAAAATTG-CGTTTGAC
1 CCCTAAACTTTTCCAAAATTACACTTTAACACCTAAACT-TTTCCAAAAATGAAGTTTAAC
* * * *
43532 CCTTAAACTTTTCCAAAATTGCACTTTAAC-CTTAAACTTTTCCAAAAATGAATTTTAAC
1 CCCTAAACTTTTCCAAAATTACACTTTAACACCTAAACTTTTCCAAAAATGAAGTTTAAC
*
43591 CCCTAAACTTTTCCAAAATTACATTTTAACACCTAAACTT
1 CCCTAAACTTTTCCAAAATTACACTTTAACACCTAAACTT
43631 CCCAAAATCA
Statistics
Matches: 79, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
58 15 0.19
59 56 0.71
60 8 0.10
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.37
Consensus pattern (60 bp):
CCCTAAACTTTTCCAAAATTACACTTTAACACCTAAACTTTTCCAAAAATGAAGTTTAAC
Found at i:43598 original size:30 final size:31
Alignment explanation
Indices: 43473--43712 Score: 155
Period size: 30 Copynumber: 8.1 Consensus size: 31
43463 CTCAAGAGGT
* * *
43473 CCCTAAACTTTT-TAAAAATCATATTTTAAC
1 CCCTAAACTTTTCCAAAAATGACATTTTAAC
* * * * *
43503 ACCTGAA-TGTTTCCAAAATTG-C-GTTTGAC
1 CCCTAAACT-TTTCCAAAAATGACATTTTAAC
* * *
43532 CCTTAAACTTTTCCAAAATTG-CACTTTAA-
1 CCCTAAACTTTTCCAAAAATGACATTTTAAC
*
43561 CCTTAAACTTTTCCAAAAATGA-ATTTTAAC
1 CCCTAAACTTTTCCAAAAATGACATTTTAAC
*
43591 CCCTAAACTTTTCC-AAAATTACATTTTAAC
1 CCCTAAACTTTTCCAAAAATGACATTTTAAC
* * *
43621 ACCTAAAC--TTCCCAAAATCACATTTTGAA-
1 CCCTAAACTTTTCCAAAAATGACATTTT-AAC
*** * *
43650 CCCTAAAC-TTTCTTGAAATTATATTTTAAC
1 CCCTAAACTTTTCCAAAAATGACATTTTAAC
* * *
43680 CCCTAAA-TTTTCCTAAAATTACATTTTTAC
1 CCCTAAACTTTTCCAAAAATGACATTTTAAC
43710 CCC
1 CCC
43713 AAATTCTTCG
Statistics
Matches: 169, Mismatches: 29, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
28 4 0.02
29 76 0.45
30 84 0.50
31 5 0.03
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (31 bp):
CCCTAAACTTTTCCAAAAATGACATTTTAAC
Found at i:43635 original size:29 final size:29
Alignment explanation
Indices: 43530--43711 Score: 161
Period size: 30 Copynumber: 6.1 Consensus size: 29
43520 ATTGCGTTTG
* * *
43530 ACCCTTAAACTTTTCCAAAATTGCACTTTA
1 ACCC-TAAACTTTCCCAAAATTACATTTTA
* * *
43560 ACCTTAAACTTTTCCAAAAATGA-ATTTTA
1 ACCCTAAAC-TTTCCCAAAATTACATTTTA
*
43589 ACCCCTAAACTTTTCCAAAATTACATTTTA
1 A-CCCTAAACTTTCCCAAAATTACATTTTA
*
43619 ACACCTAAAC-TTCCCAAAATCACATTTTGA
1 AC-CCTAAACTTTCCCAAAATTACATTTT-A
*** *
43649 ACCCTAAACTTTCTTGAAATTATATTTTA
1 ACCCTAAACTTTCCCAAAATTACATTTTA
* * *
43678 ACCCCTAAATTTTCCTAAAATTACATTTTT
1 A-CCCTAAACTTTCCCAAAATTACATTTTA
43708 ACCC
1 ACCC
43712 CAAATTCTTC
Statistics
Matches: 123, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
29 50 0.41
30 73 0.59
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.37
Consensus pattern (29 bp):
ACCCTAAACTTTCCCAAAATTACATTTTA
Found at i:43636 original size:59 final size:60
Alignment explanation
Indices: 43526--43706 Score: 176
Period size: 59 Copynumber: 3.0 Consensus size: 60
43516 CAAAATTGCG
* * * * * *
43526 TTTG-ACCCTTAAACTTTTCCAAAATTGCACTTTAACCTTAAACTTTTCCAAAAATGA-AT
1 TTTGAACCCCTAAACTTTTCCAAAATTACATTTTAACCCTAAAC-TTTCCCAAAATCACAT
43585 TTT-AACCCCTAAACTTTTCCAAAATTACATTTTAACACCTAAAC-TTCCCAAAATCACAT
1 TTTGAACCCCTAAACTTTTCCAAAATTACATTTTAAC-CCTAAACTTTCCCAAAATCACAT
** * * * *
43644 TTTGAA-CCCTAAAC-TTTCTTGAAATTATATTTTAACCCCTAAATTTTCCTAAAATTACAT
1 TTTGAACCCCTAAACTTTTC-CAAAATTACATTTTAA-CCCTAAACTTTCCCAAAATCACAT
43704 TTT
1 TTT
43707 TACCCCAAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 13
0.80 0.09 0.10
Matches are distributed among these distances:
58 14 0.14
59 64 0.62
60 25 0.24
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (60 bp):
TTTGAACCCCTAAACTTTTCCAAAATTACATTTTAACCCTAAACTTTCCCAAAATCACAT
Found at i:53424 original size:12 final size:12
Alignment explanation
Indices: 53403--53432 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
53393 TATGATATTT
*
53403 AAGAAGAAGAAG
1 AAGAAAAAGAAG
53415 AAGAAAAAGAAG
1 AAGAAAAAGAAG
53427 AAGAAA
1 AAGAAA
53433 GGGATGATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
AAGAAAAAGAAG
Found at i:54245 original size:18 final size:18
Alignment explanation
Indices: 54219--54257 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
54209 TGCTTACAGA
*
54219 ACTTCGATCAGACCTTCT
1 ACTTCGATCAGAACTTCT
*
54237 ACTTTGATCAGAACTTCT
1 ACTTCGATCAGAACTTCT
54255 ACT
1 ACT
54258 GAGGTTGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (18 bp):
ACTTCGATCAGAACTTCT
Found at i:54700 original size:43 final size:44
Alignment explanation
Indices: 54638--54720 Score: 125
Period size: 43 Copynumber: 1.9 Consensus size: 44
54628 TTTTGCCTGA
* *
54638 AAAAAAAGAGGATTGAGATGAAAACCC-ACAAAGGGTGTCTCGAT
1 AAAAAAAGAGGATCGAGATGAAAACCCGA-AAAGGGCGTCTCGAT
54682 AAAAAAA-AGGATCGAGATGAAAACCCGAAAAGGGCGTCT
1 AAAAAAAGAGGATCGAGATGAAAACCCGAAAAGGGCGTCT
54721 TGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
43 28 0.78
44 8 0.22
ACGTcount: A:0.47, C:0.14, G:0.25, T:0.13
Consensus pattern (44 bp):
AAAAAAAGAGGATCGAGATGAAAACCCGAAAAGGGCGTCTCGAT
Found at i:55834 original size:85 final size:85
Alignment explanation
Indices: 55685--55844 Score: 223
Period size: 85 Copynumber: 1.9 Consensus size: 85
55675 GATCAAACGC
** * ** * *
55685 CATCTTCTTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGTCATCTTTCTGACGAGAT
1 CATCTTCTTGATGAGATACAGAGAAGTGAATCAAAAAAATAAAGCGGTCATCTTCCTGACGAGAT
55750 -GTAGAGAAGTGAATCAAATT
66 AG-AGAGAAGTGAATCAAATT
* *
55770 CATCTTCTTGATGAGATACAGAGAAGTGAATTAAAAAAATAAAGCGGTCATCTTCCTGATGAGAT
1 CATCTTCTTGATGAGATACAGAGAAGTGAATCAAAAAAATAAAGCGGTCATCTTCCTGACGAGAT
55835 AGAGAGAAGT
66 AGAGAGAAGT
55845 AGACTAATTC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
85 64 0.98
86 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.26
Consensus pattern (85 bp):
CATCTTCTTGATGAGATACAGAGAAGTGAATCAAAAAAATAAAGCGGTCATCTTCCTGACGAGAT
AGAGAGAAGTGAATCAAATT
Found at i:56052 original size:209 final size:209
Alignment explanation
Indices: 55677--56217 Score: 796
Period size: 209 Copynumber: 2.6 Consensus size: 209
55667 TGTGAGTGGA
* *
55677 TCAAACGCCATCTTCTTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGTCATCTTTCT
1 TCAAACCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGTCATCTTCCT
* * *
55742 GACGAGATGTAGAGAAGTGAATCAAAT-TCATCTTCTTGATGAGATACAGAGAAGTGAATTAAAA
66 GACGAGATGCAGAGAAGTGAATCAAATCT-ATCTTCCTGATGAGATACAGAGAAGTGGATTAAAA
** * * *
55806 AAATAAAGCGGTCATCTTCCTGATGAGATAGAGAGAAGTAGACTAATTCAATCAAGCGACGCTCA
130 AAATAAAGCAATCATCTTCCTGATAAGATAGAGAGAAGTAGACCAATTCAATCAAGCGAAGCTCA
55871 ATGTAAGTGAAACTT
195 ATGTAAGTGAAACTT
* * * *
55886 TCAAACCCCATCTTCTTGATGAGATACGGCGAAGTGAGTCAAAGCAATAAAGTGGTCATCTTCCT
1 TCAAACCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGTCATCTTCCT
* * * *
55951 GACGAGATGCAGAGAAGTGAATCAAATCTGTCTTCCTAATGAGATACAGAGAATTGGATTAAAAC
66 GACGAGATGCAGAGAAGTGAATCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATTAAAAA
* * * *
56016 AATGAAGCAATCATCTTCCTGATAAGATATAGAGAAGTATACCAATTCAATGAAGCGAAGCTCAA
131 AATAAAGCAATCATCTTCCTGATAAGATAGAGAGAAGTAGACCAATTCAATCAAGCGAAGCTCAA
*
56081 TGTGAGTGAAACTT
196 TGTAAGTGAAACTT
* * * * *
56095 CCAAACCCCATCTTCCTGATGAGATACAAAGAAATGGGTCGAAGTAATAAAGTGGTCATCTTCCT
1 TCAAACCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGTCATCTTCCT
* *
56160 GACAAGATGCAGAGAAGTGAACCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGA
66 GACGAGATGCAGAGAAGTGAATCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGA
56218 CCAAAAGATG
Statistics
Matches: 294, Mismatches: 37, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
209 293 1.00
210 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (209 bp):
TCAAACCCCATCTTCTTGATGAGATACAGAGAAGTGGGTCGAAGCAATAAAGTGGTCATCTTCCT
GACGAGATGCAGAGAAGTGAATCAAATCTATCTTCCTGATGAGATACAGAGAAGTGGATTAAAAA
AATAAAGCAATCATCTTCCTGATAAGATAGAGAGAAGTAGACCAATTCAATCAAGCGAAGCTCAA
TGTAAGTGAAACTT
Found at i:56193 original size:37 final size:37
Alignment explanation
Indices: 56152--56222 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
56142 TAAAGTGGTC
*
56152 ATCTTCCTGACAAGATGCAGAGAAGTGAACCAAATCT
1 ATCTTCCTGACAAGATACAGAGAAGTGAACCAAATCT
** *
56189 ATCTTCCTGATGAGATACAGAGAAGTGGACCAAA
1 ATCTTCCTGACAAGATACAGAGAAGTGAACCAAA
56223 AGATGAAGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (37 bp):
ATCTTCCTGACAAGATACAGAGAAGTGAACCAAATCT
Found at i:58180 original size:30 final size:29
Alignment explanation
Indices: 57998--58217 Score: 113
Period size: 30 Copynumber: 7.4 Consensus size: 29
57988 TAAAAACCAT
* * *
57998 ATTTTGACCCTCAAATATTTCCAAAATAAT
1 ATTTTGACCCTCAAA-CTTTCCAAAATTAC
* * *
58028 GTTTTGACCCTCGAACTTTTCCAAAATTAA
1 ATTTTGACCCTCAAAC-TTTCCAAAATTAC
* * *** **
58058 ACTTTGA-CCTTAAACTTTTTTTAAATTGT
1 ATTTTGACCCTCAAAC-TTTCCAAAATTAC
* * *
58087 ATTTGGTCCC-CTAAACTTTTTCCAAAATTGC
1 ATTTTGACCCTC-AAAC--TTTCCAAAATTAC
* * * *
58118 ATTTTGACCACCCAAACTTCCCAATATCAC
1 ATTTTGACC-CTCAAACTTTCCAAAATTAC
*
58148 ATTTTGACCCTCAAACTTTCCTTAAATTAC
1 ATTTTGACCCTCAAACTTTCC-AAAATTAC
* * *
58178 ATTTT-AACCTTAAATTTTCCCAAAATTAC
1 ATTTTGACCCTCAAACTTT-CCAAAATTAC
*
58207 ATTTTAACCCT
1 ATTTTGACCCT
58218 AAATTCTTCA
Statistics
Matches: 143, Mismatches: 38, Indels: 18
0.72 0.19 0.09
Matches are distributed among these distances:
29 51 0.36
30 69 0.48
31 17 0.12
32 5 0.03
33 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (29 bp):
ATTTTGACCCTCAAACTTTCCAAAATTAC
Found at i:58240 original size:29 final size:28
Alignment explanation
Indices: 58095--58244 Score: 99
Period size: 29 Copynumber: 5.1 Consensus size: 28
58085 GTATTTGGTC
*
58095 CCCTAAACTTTTTCCAAAATTGCATTTTGACCA
1 CCCTAAA--TTTTCCAAAATTACATTTT-A--A
* * * * *
58128 CCC-AAACTTCCCAATATCACATTTTGA
1 CCCTAAATTTTCCAAAATTACATTTTAA
* *
58155 CCCTCAAACTTTCCTTAAATTACATTTTAA
1 CCCT-AAATTTTCC-AAAATTACATTTTAA
*
58185 CCTTAAATTTTCCCAAAATTACATTTTAA
1 CCCTAAATTTT-CCAAAATTACATTTTAA
*
58214 CCCTAAATTCTT-CAAAACTT-CATTTTTA
1 CCCTAAATT-TTCCAAAA-TTACATTTTAA
58242 CCC
1 CCC
58245 CTTTTTTATT
Statistics
Matches: 95, Mismatches: 16, Indels: 17
0.74 0.12 0.13
Matches are distributed among these distances:
27 4 0.04
28 15 0.16
29 38 0.40
30 32 0.34
32 3 0.03
33 3 0.03
ACGTcount: A:0.33, C:0.28, G:0.02, T:0.37
Consensus pattern (28 bp):
CCCTAAATTTTCCAAAATTACATTTTAA
Found at i:62396 original size:18 final size:18
Alignment explanation
Indices: 62325--62396 Score: 56
Period size: 18 Copynumber: 3.9 Consensus size: 18
62315 TGTCACTATG
* *
62325 TATTTTAAAATTAAAAAA
1 TATTTTAAAAATAAAAAT
* **
62343 TATATTAAATGTAAAAAT
1 TATTTTAAAAATAAAAAT
*
62361 CTGATTTTTAATAA-AAAAAT
1 -T-A-TTTTAAAAATAAAAAT
62381 TATTTTAAAAATAAAA
1 TATTTTAAAAATAAAA
62397 TGTGAAATTG
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
17 8 0.20
18 19 0.46
19 2 0.05
20 7 0.17
21 5 0.12
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (18 bp):
TATTTTAAAAATAAAAAT
Found at i:63441 original size:2 final size:2
Alignment explanation
Indices: 63436--63467 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
63426 TCCATTTAAA
63436 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63468 GTATGTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63493 original size:13 final size:13
Alignment explanation
Indices: 63475--63505 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
63465 TATGTATGTG
63475 AAAAAAATA-AAC
1 AAAAAAATAGAAC
63487 AAAAAAATAGAAC
1 AAAAAAATAGAAC
63500 AAAAAA
1 AAAAAA
63506 GGGTTAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.84, C:0.06, G:0.03, T:0.06
Consensus pattern (13 bp):
AAAAAAATAGAAC
Found at i:63928 original size:66 final size:66
Alignment explanation
Indices: 63822--63953 Score: 255
Period size: 66 Copynumber: 2.0 Consensus size: 66
63812 TTTATGTAGG
*
63822 TTTCCAAAATGACATAGTTTTGGGCATGATTTAAAACACCCAAAACGATGCCGTTTTGGCTTATG
1 TTTCCAAAATGACATAGTTTTGGGCATGATTTAAAACACCCAAAACGACGCCGTTTTGGCTTATG
63887 C
66 C
63888 TTTCCAAAATGACATAGTTTTGGGCATGATTTAAAACACCCAAAACGACGCCGTTTTGGCTTATG
1 TTTCCAAAATGACATAGTTTTGGGCATGATTTAAAACACCCAAAACGACGCCGTTTTGGCTTATG
63953 C
66 C
63954 CTTAATAATC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31
Consensus pattern (66 bp):
TTTCCAAAATGACATAGTTTTGGGCATGATTTAAAACACCCAAAACGACGCCGTTTTGGCTTATG
C
Found at i:64210 original size:29 final size:29
Alignment explanation
Indices: 64177--64357 Score: 222
Period size: 29 Copynumber: 6.2 Consensus size: 29
64167 GTTTTACCCA
*
64177 AAAATCACATTTAAGCCTCAAACTTTCCC
1 AAAATCACATTTAAGCCTCAAACTTTCCT
* *
64206 AAAATCACATTTCAACCCCCAAACTTTCCT
1 AAAATCACATTT-AAGCCTCAAACTTTCCT
* * *
64236 AAAATCACATTTAAGCCTTAAACTTCCCC
1 AAAATCACATTTAAGCCTCAAACTTTCCT
64265 AAAATCACATTTCAATGCCT-AAACTTTCCT
1 AAAATCACATTT-AA-GCCTCAAACTTTCCT
64295 AAAATCACATTTAAGCCTCAAACTTTCCT
1 AAAATCACATTTAAGCCTCAAACTTTCCT
* * * *
64324 AAAATTACATTTCAA-CCCCAAGCTTTTCT
1 AAAATCACATTT-AAGCCTCAAACTTTCCT
64353 AAAAT
1 AAAAT
64358 TGCATTTTGA
Statistics
Matches: 133, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
28 4 0.03
29 75 0.56
30 50 0.38
31 4 0.03
ACGTcount: A:0.38, C:0.29, G:0.03, T:0.30
Consensus pattern (29 bp):
AAAATCACATTTAAGCCTCAAACTTTCCT
Found at i:64269 original size:59 final size:58
Alignment explanation
Indices: 64177--64357 Score: 272
Period size: 59 Copynumber: 3.1 Consensus size: 58
64167 GTTTTACCCA
64177 AAAATCACATTTAAGCCTCAAACTTTCCCAAAATCACATTTCAACCCCCAAACTTTCCT
1 AAAATCACATTTAAGCCTCAAACTTTCCCAAAATCACATTTCAA-CCCCAAACTTTCCT
* * * *
64236 AAAATCACATTTAAGCCTTAAACTTCCCCAAAATCACATTTCAATGCCTAAACTTTCCT
1 AAAATCACATTTAAGCCTCAAACTTTCCCAAAATCACATTTCAA-CCCCAAACTTTCCT
* * * *
64295 AAAATCACATTTAAGCCTCAAACTTTCCTAAAATTACATTTCAACCCCAAGCTTTTCT
1 AAAATCACATTTAAGCCTCAAACTTTCCCAAAATCACATTTCAACCCCAAACTTTCCT
64353 AAAAT
1 AAAAT
64358 TGCATTTTGA
Statistics
Matches: 109, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
58 15 0.14
59 94 0.86
ACGTcount: A:0.38, C:0.29, G:0.03, T:0.30
Consensus pattern (58 bp):
AAAATCACATTTAAGCCTCAAACTTTCCCAAAATCACATTTCAACCCCAAACTTTCCT
Found at i:64370 original size:29 final size:28
Alignment explanation
Indices: 64286--64400 Score: 106
Period size: 29 Copynumber: 4.0 Consensus size: 28
64276 TCAATGCCTA
* * *
64286 AACTTTCCTAAAATCACA-TTTAAGCCTCA
1 AACTTTCCTAAAATTACATTTTGA-CC-CC
**
64315 AACTTTCCTAAAATTACATTTCAACCCC
1 AACTTTCCTAAAATTACATTTTGACCCC
* * *
64343 AAGCTTTTCTAAAATTGCATTTTGACCCTT
1 AA-CTTTCCTAAAATTACATTTTGACCC-C
*
64373 AACTTTCCAAAAATTACATTTTGACCCC
1 AACTTTCCTAAAATTACATTTTGACCCC
64401 TAAACTTTTT
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
28 3 0.04
29 62 0.87
30 6 0.08
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.35
Consensus pattern (28 bp):
AACTTTCCTAAAATTACATTTTGACCCC
Found at i:64414 original size:29 final size:29
Alignment explanation
Indices: 64206--64486 Score: 122
Period size: 30 Copynumber: 9.5 Consensus size: 29
64196 AAACTTTCCC
* * * *
64206 AAAATCACATTTCAACCCCCAAACTTTCCT
1 AAAATTACATTTTAACCCCTAAACTTT-TT
* * * ***
64236 AAAATCACA-TTTAAGCCTTAAACTTCCCC
1 AAAATTACATTTTAACCCCTAAACTT-TTT
* * ** *
64265 AAAATCACATTTCAATGCCTAAACTTTCCT
1 AAAATTACATTTTAACCCCTAAACTTT-TT
* * *
64295 AAAATCACA-TTTAA-GCCTCAAACTTTCCT
1 AAAATTACATTTTAACCCCT-AAACTTT-TT
* *
64324 AAAATTACATTTCAACCCC-AAGCTTTTCT
1 AAAATTACATTTTAACCCCTAAACTTTT-T
* * * **
64353 AAAATTGCATTTTGA-CCCTTAACTTTCCA
1 AAAATTACATTTTAACCCCTAAACTTT-TT
*
64382 AAAATTACATTTTGACCCCTAAACTTTTT
1 AAAATTACATTTTAACCCCTAAACTTTTT
* * *
64411 AAAAATTATATTTTAACACCTAAATTTTTT
1 -AAAATTACATTTTAACCCCTAAACTTTTT
* * * ***
64441 CAAATTTACATTTTAATCCTTAAACATTCCC
1 -AAAATTACATTTTAACCCCTAAAC-TTTTT
64472 AAAATTACATTTTAA
1 AAAATTACATTTTAA
64487 ACCCAAAATT
Statistics
Matches: 195, Mismatches: 44, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
28 7 0.04
29 82 0.42
30 102 0.52
31 4 0.02
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.36
Consensus pattern (29 bp):
AAAATTACATTTTAACCCCTAAACTTTTT
Found at i:64415 original size:30 final size:30
Alignment explanation
Indices: 64324--64486 Score: 125
Period size: 30 Copynumber: 5.5 Consensus size: 30
64314 AAACTTTCCT
* *
64324 AAAATTACATTTCAACCCC-AAGCTTTTCT-
1 AAAATTACATTTTAACCCCTAAACTTTT-TA
* * * **
64353 AAAATTGCATTTTGA-CCCTTAACTTTCCA
1 AAAATTACATTTTAACCCCTAAACTTTTTA
*
64382 AAAATTACATTTTGACCCCTAAACTTTTTA
1 AAAATTACATTTTAACCCCTAAACTTTTTA
* * * *
64412 AAAATTATATTTTAACACCTAAATTTTTTC
1 AAAATTACATTTTAACCCCTAAACTTTTTA
* * * * ***
64442 AAATTTACATTTTAATCCTTAAACATTCCC
1 AAAATTACATTTTAACCCCTAAACTTTTTA
64472 AAAATTACATTTTAA
1 AAAATTACATTTTAA
64487 ACCCAAAATT
Statistics
Matches: 105, Mismatches: 26, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
28 3 0.03
29 31 0.30
30 71 0.68
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.40
Consensus pattern (30 bp):
AAAATTACATTTTAACCCCTAAACTTTTTA
Found at i:67633 original size:59 final size:59
Alignment explanation
Indices: 67539--67719 Score: 210
Period size: 60 Copynumber: 3.1 Consensus size: 59
67529 TTTACACCTT
* * * * * *
67539 TAAACTTTCCTAAAATCACATTTCAACCCTCAAACTTTTCT-AAATTGCATTTTAA-CAC
1 TAAACTTTCCAAAAATTATATTTTAACCCT-AAACTTTTCTAAAATTACATTTTAACCCC
*
67597 TCGAACTTTCCAAAAAATTATATTTTAACCCTAAAC-TTTCTAAAAATTACATTTTAACCCC
1 T-AAACTTTCC-AAAAATTATATTTTAACCCTAAACTTTTCT-AAAATTACATTTTAACCCC
*
67658 TAAACATTCCAAAAATTATATTTTAACCCCTAAA-TTTTCTAAAATTACATTTTAA-CCC
1 TAAACTTTCCAAAAATTATATTTTAA-CCCTAAACTTTTCTAAAATTACATTTTAACCCC
67716 TAAA
1 TAAA
67720 ATTCTAAAAA
Statistics
Matches: 107, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
58 13 0.12
59 43 0.40
60 48 0.45
61 3 0.03
ACGTcount: A:0.40, C:0.23, G:0.01, T:0.36
Consensus pattern (59 bp):
TAAACTTTCCAAAAATTATATTTTAACCCTAAACTTTTCTAAAATTACATTTTAACCCC
Found at i:67650 original size:29 final size:29
Alignment explanation
Indices: 67539--67729 Score: 176
Period size: 29 Copynumber: 6.5 Consensus size: 29
67529 TTTACACCTT
* *
67539 TAAACTTTCCT-AAAATCACATTTCAACCC
1 TAAACTTT-CTAAAAATTACATTTTAACCC
* *
67568 TCAAACTTTTCT--AAATTGCATTTTAACAC
1 T-AAAC-TTTCTAAAAATTACATTTTAACCC
* * *
67597 TCGAACTTTCCAAAAAATTATATTTTAACCC
1 T-AAACTTT-CTAAAAATTACATTTTAACCC
67628 TAAACTTTCTAAAAATTACATTTTAACCCC
1 TAAACTTTCTAAAAATTACATTTTAA-CCC
* * *
67658 TAAACATTCCAAAAATTATATTTTAACCCC
1 TAAACTTTCTAAAAATTACATTTTAA-CCC
*
67688 TAAATTTTCT-AAAATTACATTTTAACCC
1 TAAACTTTCTAAAAATTACATTTTAACCC
*
67716 TAAA-ATTCTAAAAA
1 TAAACTTTCTAAAAA
67730 GACTTCATTT
Statistics
Matches: 135, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
27 4 0.03
28 14 0.10
29 50 0.37
30 49 0.36
31 18 0.13
ACGTcount: A:0.41, C:0.22, G:0.01, T:0.36
Consensus pattern (29 bp):
TAAACTTTCTAAAAATTACATTTTAACCC
Found at i:70828 original size:30 final size:30
Alignment explanation
Indices: 70792--70939 Score: 149
Period size: 30 Copynumber: 4.9 Consensus size: 30
70782 AAACCCTTAC
* *
70792 ACCCTCAAACTTTCCCAAAATCACATTTCA
1 ACCCTCAAACTTTCCCAAAATTACATTTTA
***
70822 ACCCTCAAACTTTTTAAAAATTACATTTTA
1 ACCCTCAAACTTTCCCAAAATTACATTTTA
* **
70852 ACCCTTAAA-TATTCTAAAAATTACATTTTA
1 ACCCTCAAACT-TTCCCAAAATTACATTTTA
* * *
70882 ACCACT-AAATTTTTCCAACATTACATTTTA
1 ACC-CTCAAACTTTCCCAAAATTACATTTTA
70912 ACCC-CTAAACTTTCCCAAAATTACATTT
1 ACCCTC-AAACTTTCCCAAAATTACATTT
70940 CGGCCATAAA
Statistics
Matches: 99, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
29 2 0.02
30 94 0.95
31 3 0.03
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.36
Consensus pattern (30 bp):
ACCCTCAAACTTTCCCAAAATTACATTTTA
Found at i:70878 original size:60 final size:60
Alignment explanation
Indices: 70793--70940 Score: 167
Period size: 60 Copynumber: 2.5 Consensus size: 60
70783 AACCCTTACA
* *
70793 CCCTCAAACTTTCCCAAAATCACATTTCAACC-CTCAAACTTTTT-AAAAATTACATTTTAAC
1 CCCT-AAACTTTCCAAAAATTACATTTCAACCACT-AAA-TTTTTCAAAAATTACATTTTAAC
* * * * *
70854 CCTTAAA-TATTCTAAAAATTACATTTTAACCACTAAATTTTTCCAACATTACATTTTAAC
1 CCCTAAACT-TTCCAAAAATTACATTTCAACCACTAAATTTTTCAAAAATTACATTTTAAC
*
70914 CCCTAAACTTTCCCAAAATTACATTTC
1 CCCTAAACTTTCCAAAAATTACATTTC
70941 GGCCATAAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
59 6 0.08
60 60 0.83
61 6 0.08
ACGTcount: A:0.38, C:0.26, G:0.00, T:0.36
Consensus pattern (60 bp):
CCCTAAACTTTCCAAAAATTACATTTCAACCACTAAATTTTTCAAAAATTACATTTTAAC
Found at i:72468 original size:85 final size:85
Alignment explanation
Indices: 72325--72491 Score: 217
Period size: 85 Copynumber: 2.0 Consensus size: 85
72315 CAAACTCCCA
* * * * * *
72325 TCTTCCTGATCAGATATAGAGAAGTGGGTTAAAGCAATAAAGTGGTCATCTTCCTGATGATATAC
1 TCTTCCTGATCAGATATACAGAAATGGATTAAAACAATAAAGCGGTCATCTTCCTGATGAGATAC
* **
72390 AGAGAAGTGGACCAAATTCG
66 AAAGAAGAAGACCAAATTCG
* * * *
72410 TCTTCCTGATGAGATATACAGAAATGGATTAAAACAATGAGGCGGTCATCTTCTTGATGAGATAC
1 TCTTCCTGATCAGATATACAGAAATGGATTAAAACAATAAAGCGGTCATCTTCCTGATGAGATAC
72475 AAAGAAGAAGACCAAAT
66 AAAGAAGAAGACCAAAT
72492 CAATGAAGTC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 69 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (85 bp):
TCTTCCTGATCAGATATACAGAAATGGATTAAAACAATAAAGCGGTCATCTTCCTGATGAGATAC
AAAGAAGAAGACCAAATTCG
Found at i:72557 original size:209 final size:207
Alignment explanation
Indices: 71941--72695 Score: 895
Period size: 209 Copynumber: 3.7 Consensus size: 207
71931 TTTTCACAGT
* * *
71941 GGTCAAAGCATTAAAGCGGTCATCTTTCTGATGAGATACAGAGAAGTGGACCAAATCTGTCTCCC
1 GGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATC-GTCTTCC
* * * *
72006 AAATGAGATAAAGAGAAGTGAATTAAAACAATGAGGCAGTCATCTTCCT-ATGAGATACATAGAA
65 TAATGAGATATAGAGAAGTGGATTAAAACAATGAGGCAGTCATCTTCCTGATGAGATACAAAGAA
** * * *
72070 GTAGACTGAATCAATGAA-ACGAAGCTTAATGTGAGTGAAACTTCAAACCCCCATCTTCCTGATA
130 GTAGACCAAATCAATGAAGTC-AAGCTCAATATGAGTGAAACTTCAAA-CCCCATCTTCCTGATA
*
72134 AGATACAAAGAAGTG
193 AGATACAGAGAAGTG
* * *
72149 GGTCAAAGCAATAAAACAGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCAT-TTCC
1 GGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAAT-CGTCTTCC
* * * *
72213 TAATGAGATACAGAGAAGTGGATTAAAACAATGAGGCAG------TCCTGATGGGATATAGAGAA
65 TAATGAGATATAGAGAAGTGGATTAAAACAATGAGGCAGTCATCTTCCTGATGAGATACAAAGAA
* * * * *
72272 GTAGACCAAATCGATGAAGTAAAGTTCAATATGAGTGAAGCTTCAAACTCCCATCTTCCTGATCA
130 GTAGACCAAATCAATGAAGTCAAGCTCAATATGAGTGAAACTTCAAAC-CCCATCTTCCTGATAA
*
72337 GATATAGAGAAGTG
194 GATACAGAGAAGTG
* * *
72351 GGTTAAAGCAATAAAGTGGTCATCTTCCTGATGATATACAGAGAAGTGGACCAAATTCGTCTTCC
1 GGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAA-TCGTCTTCC
* * * * *
72416 TGATGAGATATACAGAAATGGATTAAAACAATGAGGCGGTCATCTTCTTGATGAGATACAAAGAA
65 TAATGAGATATAGAGAAGTGGATTAAAACAATGAGGCAGTCATCTTCCTGATGAGATACAAAGAA
* * *
72481 GAAGACCAAATCAATGAAGTCAAGCTCAACATGAGTGAAACTTCAAACCCCTATCTTCCTGATGA
130 GTAGACCAAATCAATGAAGTCAAGCTCAATATGAGTGAAACTTCAAACCCC-ATCTTCCTGATAA
72546 GATACAGAGAAGTG
194 GATACAGAGAAGTG
* * * * * * * *
72560 GGTCGAAGCAATAAAGCGATCTTCTTCCTGATGAGATATAGAGAAGTGAACTAAATCGATATTCT
1 GGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCG-TCTTCC
* * * * **
72625 TGATGAAATATAGAGAAGTGGATCAAAACAATGAAGTGGTCATCTTCCTGATGAGATAC---GAA
65 TAATGAGATATAGAGAAGTGGATTAAAACAATGAGGCAGTCATCTTCCTGATGAGATACAAAGAA
72687 GTAGACCAA
130 GTAGACCAA
72696 GAGATGAAGC
Statistics
Matches: 467, Mismatches: 66, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
201 5 0.01
202 128 0.27
203 39 0.08
206 11 0.02
207 39 0.08
208 59 0.13
209 186 0.40
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (207 bp):
GGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCGTCTTCCT
AATGAGATATAGAGAAGTGGATTAAAACAATGAGGCAGTCATCTTCCTGATGAGATACAAAGAAG
TAGACCAAATCAATGAAGTCAAGCTCAATATGAGTGAAACTTCAAACCCCATCTTCCTGATAAGA
TACAGAGAAGTG
Found at i:73834 original size:12 final size:11
Alignment explanation
Indices: 73788--73839 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 11
73778 TATTTTTAGA
73788 TATTAATATA-
1 TATTAATATAT
*
73798 TA--AATTTAT
1 TATTAATATAT
73807 TATTAATATA-
1 TATTAATATAT
73817 TATTAATATACT
1 TATTAATATA-T
73829 TATTAAT-TAT
1 TATTAATATAT
73839 T
1 T
73840 TATTTATTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
8 5 0.14
9 2 0.06
10 14 0.40
11 7 0.20
12 7 0.20
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (11 bp):
TATTAATATAT
Found at i:73834 original size:22 final size:19
Alignment explanation
Indices: 73788--73835 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
73778 TATTTTTAGA
*
73788 TATTAATATATAAATTTAT
1 TATTAATATATAAATATAT
73807 TATTAATATATATTAATATACT
1 TATTAATATATA--AATATA-T
73829 TATTAAT
1 TATTAAT
73836 TATTTATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 12 0.48
21 5 0.20
22 8 0.32
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TATTAATATATAAATATAT
Found at i:74922 original size:30 final size:30
Alignment explanation
Indices: 74888--75114 Score: 192
Period size: 30 Copynumber: 7.6 Consensus size: 30
74878 ATTTTATTTA
*
74888 AAAATTACATTTTGACCCTTTAACTTTTCC
1 AAAATTACATTTTGACCCTTAAACTTTTCC
* * * *
74918 AAAATTGCATTTTGTCCCTCAAGCTTTTCC
1 AAAATTACATTTTGACCCTTAAACTTTTCC
* * * *
74948 AAAATTACCTTTT-AACCTCTAAATTTTTCA
1 AAAATTACATTTTGACCCT-TAAACTTTTCC
* * **
74978 AAAAGTGCATTTTGACCCTCGAACTTTTCC
1 AAAATTACATTTTGACCCTTAAACTTTTCC
* * * *
75008 AAAATCACATTTTTACCCTTAAGCTCTTCC
1 AAAATTACATTTTGACCCTTAAACTTTTCC
* * *
75038 AAAATCACATTTTGACCCCTAAAC-TTTCT
1 AAAATTACATTTTGACCCTTAAACTTTTCC
* * *
75067 AAAATTACATTTTAACCC-TAAA-ATTTCTT
1 AAAATTACATTTTGACCCTTAAACTTTTC-C
*
75096 AAAATTACATTTTAACCCT
1 AAAATTACATTTTGACCCT
75115 AAAATTCTCC
Statistics
Matches: 156, Mismatches: 36, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
28 8 0.05
29 41 0.26
30 103 0.66
31 4 0.03
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39
Consensus pattern (30 bp):
AAAATTACATTTTGACCCTTAAACTTTTCC
Found at i:75040 original size:90 final size:90
Alignment explanation
Indices: 74895--75060 Score: 226
Period size: 90 Copynumber: 1.8 Consensus size: 90
74885 TTAAAAATTA
** ** * * *
74895 CATTTTGACCCTTTAACTTTTCCAAAATTGCATTTTGTCCCTCAAGCTTTTCCAAAATTACCTTT
1 CATTTTGACCCTCGAACTTTTCCAAAATCACATTTTGTCCCTCAAGCTCTTCCAAAATCACATTT
*
74960 TAACCTCTAAATTTTTCAAAAAGTG
66 TAACCCCTAAATTTTTCAAAAAGTG
*
74985 CATTTTGACCCTCGAACTTTTCCAAAATCACATTTT-TACCCTTAAGCTCTTCCAAAATCACATT
1 CATTTTGACCCTCGAACTTTTCCAAAATCACATTTTGT-CCCTCAAGCTCTTCCAAAATCACATT
*
75049 TTGACCCCTAAA
65 TTAACCCCTAAA
75061 CTTTCTAAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
89 1 0.02
90 64 0.98
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.38
Consensus pattern (90 bp):
CATTTTGACCCTCGAACTTTTCCAAAATCACATTTTGTCCCTCAAGCTCTTCCAAAATCACATTT
TAACCCCTAAATTTTTCAAAAAGTG
Found at i:75135 original size:29 final size:29
Alignment explanation
Indices: 74943--75137 Score: 112
Period size: 30 Copynumber: 6.7 Consensus size: 29
74933 CCCTCAAGCT
* *
74943 TTTCC-AAAATTACCTTTTAACCTCTAAAT
1 TTTCCGAAAATTACATTTTAACC-CTAAAA
* * * * * **
74972 TTTTCAAAAAGTGCATTTTGACCCTCGAACT
1 TTTCCGAAAATTACATTTTAACCCT--AAAA
* * **
75003 TTTCC-AAAATCACATTTTTACCCTTAAGC
1 TTTCCGAAAATTACATTTTAACCC-TAAAA
* * *
75032 TCTTCC-AAAATCACATTTTGACCCCTAAAC
1 T-TTCCGAAAATTACATTTT-AACCCTAAAA
*
75062 TTT-CTAAAATTACATTTTAACCCTAAAA
1 TTTCCGAAAATTACATTTTAACCCTAAAA
**
75090 TTTCTTAAAATTACATTTTAACCCTAAAA
1 TTTCCGAAAATTACATTTTAACCCTAAAA
*
75119 TTCTCCGAAACTT-CATTTT
1 TT-TCCGAAAATTACATTTT
75138 TCGACCCCTT
Statistics
Matches: 134, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
28 12 0.09
29 55 0.41
30 56 0.42
31 11 0.08
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (29 bp):
TTTCCGAAAATTACATTTTAACCCTAAAA
Found at i:84416 original size:209 final size:208
Alignment explanation
Indices: 84088--84870 Score: 1041
Period size: 209 Copynumber: 3.8 Consensus size: 208
84078 GATATAGGTC
* * * * * *
84088 AATTCAATGAAGCGAAGCTCAATGAGAGTGAAACTTCCAAACCCTATCTTCTTAATAAGATATAG
1 AATTCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCCAAACCCCATCTTCCTGATGAGATACAG
* * * * * * * *
84153 AAAAATGGGTCGAAGCAATAAAGTGGTCATCTTCCTAACGAGATGCAAAGAAGTGAACCAAATCC
66 AGAAGTGGGTCAAAGCAATAAAGCGATCATCTTCCTGACGAGATACAGAGAAGTGAACCAAATCC
* *
84218 GTCTTCTTGATGAGATACAAATAAGTAAATTAAAACAATGAAGCAGTCATCTTCCTAATGAGATA
131 GTCTTCTTGATGAGATACAGAGAAGTAAATTAAAACAATGAAGC-GTCATCTTCCTAATGAGATA
*
84283 CAGAGAAGTAGATA
195 CAGAGAAGTAGACA
* *
84297 AATTCAATGAAGCGAAGCTTAATGTGAGTGAAACTTCCATACCCCATCTTCCTGATGAGATACAG
1 AATTCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCCAAACCCCATCTTCCTGATGAGATACAG
* * * * *
84362 AGAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTGACGAGATGCAGAGAAGTGAATCAAATCT
66 AGAAGTGGGTCAAAGCAATAAAGCGATCATCTTCCTGACGAGATACAGAGAAGTGAACCAAATCC
* * *
84427 GTCTT-TCTAATGAGATACAGAGAAGTGAATTAAAACAATGAAGCGATCATCTTCCTAATAAGAT
131 GTCTTCT-TGATGAGATACAGAGAAGTAAATTAAAACAATGAAGCG-TCATCTTCCTAATGAGAT
*
84491 ACAGAGAAGTAGACC
194 ACAGAGAAGTAGACA
* * *
84506 AATTCAATAAAGCGAAGCTCAATGTGAGTGAAACATCTAAACCCCATCTTCCTGATGAGATACAG
1 AATTCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCCAAACCCCATCTTCCTGATGAGATACAG
* * * *
84571 AGAAGTGGGTCAAAGCAATAAAACGATCATCTTCCTGATGAGATACAGAGAAGTGGACTAAATCC
66 AGAAGTGGGTCAAAGCAATAAAGCGATCATCTTCCTGACGAGATACAGAGAAGTGAACCAAATCC
* * * *
84636 GTCTTCCTGATGAGATACAGAGAAGTTAATTCAAACAATGAGGCGGTCATCTTCCTAATGAGATA
131 GTCTTCTTGATGAGATACAGAGAAGTAAATTAAAACAATGAAGC-GTCATCTTCCTAATGAGATA
*
84701 CGGAGAAGTAGACCA
195 CAGAGAAGTAGA-CA
*
84716 AA-TCAATGAAGCGAAGCTCAATGTGAGTGAAACTT-CAAACTCCTATCTTCCTGATGAGATACA
1 AATTCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCCAAAC-CCCATCTTCCTGATGAGATACA
* * * * * * * *
84779 GAGAAGTGAGTTAAAGTAATAAAGCAATCATCTTCTTGATGAGATATAGAGAAGTGGACCAAATC
65 GAGAAGTGGGTCAAAGCAATAAAGCGATCATCTTCCTGACGAGATACAGAGAAGTGAACCAAATC
*
84844 CGTCTTCTTGGTGAGATACAGAGAAGT
130 CGTCTTCTTGATGAGATACAGAGAAGT
84871 GGACCATCCT
Statistics
Matches: 510, Mismatches: 58, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
208 6 0.01
209 500 0.98
210 4 0.01
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.24
Consensus pattern (208 bp):
AATTCAATGAAGCGAAGCTCAATGTGAGTGAAACTTCCAAACCCCATCTTCCTGATGAGATACAG
AGAAGTGGGTCAAAGCAATAAAGCGATCATCTTCCTGACGAGATACAGAGAAGTGAACCAAATCC
GTCTTCTTGATGAGATACAGAGAAGTAAATTAAAACAATGAAGCGTCATCTTCCTAATGAGATAC
AGAGAAGTAGACA
Found at i:84686 original size:85 final size:85
Alignment explanation
Indices: 84552--84719 Score: 221
Period size: 85 Copynumber: 2.0 Consensus size: 85
84542 CTAAACCCCA
** *
84552 TCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAACGATCATCTTCCTGATGAGATAC
1 TCTTCCTGATGAGATACAGAGAAGTAAGTCAAAGCAATAAAACGATCATCTTCCTAATGAGATAC
* *
84617 AGAGAAGTGGACTAAATCCG
66 AGAGAAGTAGACCAAATCCG
* * ** *
84637 TCTTCCTGATGAGATACAGAGAAGTTAATTCAAA-CAATGAGGCGGTCATCTTCCTAATGAGATA
1 TCTTCCTGATGAGATACAGAGAAG-TAAGTCAAAGCAATAAAACGATCATCTTCCTAATGAGATA
*
84701 CGGAGAAGTAGACCAAATC
65 CAGAGAAGTAGACCAAATC
84720 AATGAAGCGA
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
85 65 0.92
86 6 0.08
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (85 bp):
TCTTCCTGATGAGATACAGAGAAGTAAGTCAAAGCAATAAAACGATCATCTTCCTAATGAGATAC
AGAGAAGTAGACCAAATCCG
Found at i:84899 original size:65 final size:65
Alignment explanation
Indices: 84817--84938 Score: 190
Period size: 65 Copynumber: 1.9 Consensus size: 65
84807 CATCTTCTTG
* * **
84817 ATGAGATATAGAGAAGTGGACCAAATCCGTCTTCTTGGTGAGATACAGAGAAGTGGACCATCCTA
1 ATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGTGGACCATCCTA
**
84882 ATGAGATACAGAGAAGTGGACCAAATTTGTCTTCCTAATGAGATACAGAGAAGTGGA
1 ATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGTGGA
84939 TTAAAATAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 51 1.00
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (65 bp):
ATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGTGGACCATCCTA
Found at i:84975 original size:274 final size:274
Alignment explanation
Indices: 84603--85116 Score: 821
Period size: 274 Copynumber: 1.9 Consensus size: 274
84593 ACGATCATCT
* * * * *
84603 TCCTGATGAGATACAGAGAAGTGGACTAAATCCGTCTTCCTGATGAGATACAGAGAAGTTAATTC
1 TCCTAATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGTGAATTA
*
84668 AAACAATGAGGCGGTCATCTTCCTAATGAGATACGGAGAAGTAGACCAAATCAATGAAGCGAAGC
66 AAACAATGAGGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGC
* * *
84733 TCAATGTGAGTGAAACTTCAAACTCCTATCTTCCTGATGAGATACAGAGAAGTGAGTTAAAGTAA
131 TCAATGTGAGTGAAACTTCAAACCCCCATCTTCCTGATGAGATACAGAGAAGTGAGTTAAAGCAA
* *
84798 TAAAGCAATCATCTTCTTGATGAGATATAGAGAAGTGGACCAAATCCGTCTTCTTGGTGAGATAC
196 TAAAGCAATCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCTTGGTGAGATAC
84863 AGAGAAGTGGACCA
261 AGAGAAGTGGACCA
** *
84877 TCCTAATGAGATACAGAGAAGTGGACCAAATTTGTCTTCCTAATGAGATACAGAGAAGTGGATTA
1 TCCTAATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGTGAATTA
* * *
84942 AAATAATGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCGATGAAGCGAAGC
66 AAACAATGAGGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGC
* * * *
85007 TCAATGTGAGTGAAACTTCAATCCCCCATCTTCCTGATGAGATATAGAGAAGTGGGTTAACGCAA
131 TCAATGTGAGTGAAACTTCAAACCCCCATCTTCCTGATGAGATACAGAGAAGTGAGTTAAAGCAA
**
85072 TAAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAAT
196 TAAAGCAATCATCTTCCTGATGAGATACAGAGAAGTGGACCAAAT
85117 TTATTTTCCT
Statistics
Matches: 217, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
274 217 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (274 bp):
TCCTAATGAGATACAGAGAAGTGGACCAAATCCGTCTTCCTAATGAGATACAGAGAAGTGAATTA
AAACAATGAGGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCGAAGC
TCAATGTGAGTGAAACTTCAAACCCCCATCTTCCTGATGAGATACAGAGAAGTGAGTTAAAGCAA
TAAAGCAATCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCGTCTTCTTGGTGAGATAC
AGAGAAGTGGACCA
Found at i:85267 original size:209 final size:208
Alignment explanation
Indices: 84877--85407 Score: 767
Period size: 209 Copynumber: 2.5 Consensus size: 208
84867 AAGTGGACCA
* * *
84877 TCCTAATGAGATACAGAGAAGTGGACCAAATTTGTCTTCCTAATGAGATACAGAGAAGTGGATTA
1 TCCTGATGAGATACAGAGAAGTGGACCAAATTTATCTTCCTGATGAGATACAGAGAAGTGGATTA
* * * * *
84942 AAATAATGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCGATGAAGCGAAGC
66 AAATAATGAGG-TGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACGAAACCAAGC
* * * *
85007 TCAATGTGAGTGAAACTTCAATCCCCCATCTTCCTGATGAGATATAGAGAAGTGGGTTAACGCAA
130 TCAATGTGAGTGAAACTTCAAACCCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAA
85072 TAAAGCGGTCATCT
195 TAAAGCGGTCATCT
* *
85086 TCCTGATGAGATACAGAGAAGTGGACCAAATTTATTTTCCTGATGAGATACAGAGAAATGGATTA
1 TCCTGATGAGATACAGAGAAGTGGACCAAATTTATCTTCCTGATGAGATACAGAGAAGTGGATTA
* *
85151 AAATAATGAGGATGTCATCTTCCTGATGAGATATAGAGAAGTATACCAAATCAACGAAACCAAGC
66 AAATAATGAGG-TGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACGAAACCAAGC
* * * *
85216 TCAATGTGAGTGAAACTTCAAACCCCTATCTTCTTGATGATATACAGAGAAGTGGGTCAAAGTAA
130 TCAATGTGAGTGAAACTTCAAACCCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAA
85281 TAAAGCGGTCATCT
195 TAAAGCGGTCATCT
* * * * *
85295 TCTTGATGAGATATAGAGAAGTGGA-CAAATTCATCTTCTTGATGAGATACAGAGAAGTGGATGA
1 TCCTGATGAGATACAGAGAAGTGGACCAAATTTATCTTCCTGATGAGATACAGAGAAGTGGATTA
* * * *
85359 AAACAATGAAGTGGTCATCTTCTTGATGAGATACAGAGAAGTGGACCAA
66 AAATAATGAGGT-GTCATCTTCCTGATGAGATACAGAGAAGTAGACCAA
85408 GAGATGAAGC
Statistics
Matches: 287, Mismatches: 34, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
207 1 0.00
208 75 0.26
209 211 0.74
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (208 bp):
TCCTGATGAGATACAGAGAAGTGGACCAAATTTATCTTCCTGATGAGATACAGAGAAGTGGATTA
AAATAATGAGGTGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACGAAACCAAGCT
CAATGTGAGTGAAACTTCAAACCCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAAT
AAAGCGGTCATCT
Found at i:85313 original size:483 final size:482
Alignment explanation
Indices: 84401--85355 Score: 1435
Period size: 483 Copynumber: 2.0 Consensus size: 482
84391 TCTTCCTGAC
* * *
84401 GAGATGCAGAGAAGTGAATCAAATCTGTCTTTCTAATGAGATACAGAGAAGTGAATTAAAACAAT
1 GAGATACAGAGAAGTGAACCAAATCTGTCTTCCTAATGAGATACAGAGAAGTGAATTAAAACAAT
*
84466 GAAGCGATCATCTTCCTAATAAGATACAGAGAAGTAGACCAATTCAATAAAGCGAAGCTCAATGT
66 GAAGCGATCATCTTCCTAATAAGATACAGAGAAGTAGACCAAATCAATAAAGCGAAGCTCAATGT
84531 GAGTGAAACATCTAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAACG
131 GAGTGAAACATCTAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAACG
* * *
84596 ATCATCTTCCTGATGAGATACAGAGAAGTGGACTAAATCCGTCTTCCTGATGAGATACAGAGAAG
196 ATCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCTGATGAGATACAGAGAAA
* * * * *
84661 TTAATTCAAACAATGAGGCGGTCATCTTCCTAATGAGATACGGAGAAGTAGACCAAATCAATGAA
261 TGAATTAAAACAATGAGGAGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAACGAA
* * * *
84726 GCGAAGCTCAATGTGAGTGAAACTTCAAACTCCTATCTTCCTGATGAGATACAGAGAAGTGAGTT
326 ACCAAGCTCAATGTGAGTGAAACTTCAAACCCCTATCTTCCTGATGAGATACAGAGAAGTGAGTC
* *
84791 AAAGTAATAAAGCAATCATCTTCTTGATGAGATATAGAGAAGTGGACCAAATCCGTCTTCTTGGT
391 AAAGTAATAAAGCAATCATCTTCTTGATGAGATATAGAGAAGTGGA-CAAATCCATCTTCTTGAT
84856 GAGATACAGAGAAGTGGACCATCCTAAT
455 GAGATACAGAGAAGTGGACCATCCTAAT
* * * *
84884 GAGATACAGAGAAGTGGACCAAATTTGTCTTCCTAATGAGATACAGAGAAGTGGATTAAAATAAT
1 GAGATACAGAGAAGTGAACCAAATCTGTCTTCCTAATGAGATACAGAGAAGTGAATTAAAACAAT
* * * * * *
84949 GAGGCGGTCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCGATGAAGCGAAGCTCAATGT
66 GAAGCGATCATCTTCCTAATAAGATACAGAGAAGTAGACCAAATCAATAAAGCGAAGCTCAATGT
* * * * * *
85014 GAGTGAAACTTC-AATCCCCCATCTTCCTGATGAGATATAGAGAAGTGGGTTAACGCAATAAAGC
131 GAGTGAAACATCTAA-ACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAAC
* ** *
85078 GGTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATTTATTTTCCTGATGAGATACAGAGAA
195 GATCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCTGATGAGATACAGAGAA
* * * * * *
85143 ATGGATTAAAATAATGAGGATGTCATCTTCCTGATGAGATATAGAGAAGTATACCAAATCAACGA
260 ATGAATTAAAACAATGAGGAGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAACGA
* * *
85208 AACCAAGCTCAATGTGAGTGAAACTTCAAACCCCTATCTTCTTGATGATATACAGAGAAGTGGGT
325 AACCAAGCTCAATGTGAGTGAAACTTCAAACCCCTATCTTCCTGATGAGATACAGAGAAGTGAGT
** *
85273 CAAAGTAATAAAGCGGTCATCTTCTTGATGAGATATAGAGAAGTGGACAAATTCATCTTCTTGAT
390 CAAAGTAATAAAGCAATCATCTTCTTGATGAGATATAGAGAAGTGGACAAATCCATCTTCTTGAT
85338 GAGATACAGAGAAGTGGA
455 GAGATACAGAGAAGTGGA
85356 TGAAAACAAT
Statistics
Matches: 421, Mismatches: 50, Indels: 3
0.89 0.11 0.01
Matches are distributed among these distances:
482 35 0.08
483 386 0.92
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (482 bp):
GAGATACAGAGAAGTGAACCAAATCTGTCTTCCTAATGAGATACAGAGAAGTGAATTAAAACAAT
GAAGCGATCATCTTCCTAATAAGATACAGAGAAGTAGACCAAATCAATAAAGCGAAGCTCAATGT
GAGTGAAACATCTAAACCCCATCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAACG
ATCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCTGATGAGATACAGAGAAA
TGAATTAAAACAATGAGGAGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAACGAA
ACCAAGCTCAATGTGAGTGAAACTTCAAACCCCTATCTTCCTGATGAGATACAGAGAAGTGAGTC
AAAGTAATAAAGCAATCATCTTCTTGATGAGATATAGAGAAGTGGACAAATCCATCTTCTTGATG
AGATACAGAGAAGTGGACCATCCTAAT
Found at i:85314 original size:48 final size:43
Alignment explanation
Indices: 85243--85402 Score: 145
Period size: 48 Copynumber: 3.7 Consensus size: 43
85233 TCAAACCCCT
*
85243 ATCTTCTTGATGATATACAGAGAAGTGGGTCAAAGTAATAAAGCGGTC
1 ATCTTCTTGATGAGATACAGAGAAGTGGGT-AAA--AAT-AAG-GGTC
* *
85291 ATCTTCTTGATGAGATATAGAGAAGT-GG-ACAAAT-----TC
1 ATCTTCTTGATGAGATACAGAGAAGTGGGTAAAAATAAGGGTC
*
85327 ATCTTCTTGATGAGATACAGAGAAGTGGATGAAAACAATGAAGTGGTC
1 ATCTTCTTGATGAGATACAGAGAAGTGG--GTAAA-AAT-AAG-GGTC
85375 ATCTTCTTGATGAGATACAGAGAAGTGG
1 ATCTTCTTGATGAGATACAGAGAAGTGG
85403 ACCAAGAGAT
Statistics
Matches: 95, Mismatches: 5, Indels: 24
0.77 0.04 0.19
Matches are distributed among these distances:
36 27 0.28
37 1 0.01
39 1 0.01
40 2 0.02
41 3 0.03
43 3 0.03
45 2 0.02
47 2 0.02
48 54 0.57
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.28
Consensus pattern (43 bp):
ATCTTCTTGATGAGATACAGAGAAGTGGGTAAAAATAAGGGTC
Found at i:85384 original size:84 final size:84
Alignment explanation
Indices: 85243--85404 Score: 252
Period size: 84 Copynumber: 1.9 Consensus size: 84
85233 TCAAACCCCT
* * **
85243 ATCTTCTTGATGATATACAGAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCTTGATGAGATA
1 ATCTTCTTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGGTCATCTTCTTGATGAGATA
*
85308 TAGAGAAGTGGACAAATTC
66 CAGAGAAGTGGACAAATTC
* * *
85327 ATCTTCTTGATGAGATACAGAGAAGTGGATGAAAACAATGAAGTGGTCATCTTCTTGATGAGATA
1 ATCTTCTTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGGTCATCTTCTTGATGAGATA
85392 CAGAGAAGTGGAC
66 CAGAGAAGTGGAC
85405 CAAGAGATGA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 70 1.00
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (84 bp):
ATCTTCTTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGGTCATCTTCTTGATGAGATA
CAGAGAAGTGGACAAATTC
Found at i:86460 original size:29 final size:29
Alignment explanation
Indices: 86400--86465 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
86390 CGAAGCGTTT
* *
86400 TTATTTTTAGATATTAATATATCAATTTA
1 TTATTTATAGATATTAATATATCAATTAA
* *
86429 TTATTTATATATATTAATATA-CTTATTAA
1 TTATTTATAGATATTAATATATC-AATTAA
86458 TTATTTAT
1 TTATTTAT
86466 TTATTTCTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 1 0.03
29 31 0.97
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (29 bp):
TTATTTATAGATATTAATATATCAATTAA
Found at i:86880 original size:25 final size:23
Alignment explanation
Indices: 86837--86894 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 23
86827 GATTTTGTTT
* *
86837 TAAAAATAAAAACATATTTTAAAA
1 TAAAAA-AAAAACAGATTTGAAAA
86861 TACTAAAAAAAAACAGATTTGAAAA
1 TA--AAAAAAAAACAGATTTGAAAA
86886 TAAAAAAAA
1 TAAAAAAAA
86895 GAAAATCCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 7 0.23
24 2 0.07
25 17 0.57
26 4 0.13
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.22
Consensus pattern (23 bp):
TAAAAAAAAAACAGATTTGAAAA
Found at i:87562 original size:30 final size:30
Alignment explanation
Indices: 87528--87788 Score: 159
Period size: 30 Copynumber: 8.8 Consensus size: 30
87518 AATTGCATAA
87528 TGACCTCTAAACTTTTCCAAAATTACATTT
1 TGACCTCTAAACTTTTCCAAAATTACATTT
* *
87558 TGACC-CTCAAACTTTT-TAAAATTATATTT
1 TGACCTCT-AAACTTTTCCAAAATTACATTT
* *
87587 TAACCT-TAAACTTTTCCAAAATTACCTTT
1 TGACCTCTAAACTTTTCCAAAATTACATTT
* * * * *
87616 TGTCCCCTAAATTTTTTCAAAATTGCATTT
1 TGACCTCTAAACTTTTCCAAAATTACATTT
* * *
87646 TAATCCTC-GAACTTTTCCAAAATCACATTT
1 TGA-CCTCTAAACTTTTCCAAAATTACATTT
* * * *
87676 T-ACCCCCAAAC-TCTCCTAAAATCACATTT
1 TGACCTCTAAACTTTTCC-AAAATTACATTT
* * *
87705 TGACC-CTCAAAC-TTTCTCGAGATAACATTT
1 TGACCTCT-AAACTTTTC-CAAAATTACATTT
** * *
87735 TGTTCTCCTAAACTTCT-AAAAATTACATTT
1 TGACCT-CTAAACTTTTCCAAAATTACATTT
87765 TGATCC-C-AAA-TTTTCCTAAAATTA
1 TGA-CCTCTAAACTTTTCC-AAAATTA
87789 TGTTTTAACC
Statistics
Matches: 175, Mismatches: 40, Indels: 33
0.71 0.16 0.13
Matches are distributed among these distances:
27 3 0.02
28 18 0.10
29 57 0.33
30 84 0.48
31 9 0.05
32 4 0.02
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39
Consensus pattern (30 bp):
TGACCTCTAAACTTTTCCAAAATTACATTT
Found at i:87604 original size:58 final size:58
Alignment explanation
Indices: 87530--87687 Score: 185
Period size: 58 Copynumber: 2.7 Consensus size: 58
87520 TTGCATAATG
*
87530 ACCTCTAAACTTTTCCAAAATTACATTTTGACCCTCAAACTTTTT-AAAATTATATTTTA
1 ACCT-TAAACTTTTCCAAAATTACATTTTGACCC-CAAACTTTTTCAAAATTACATTTTA
* * * *
87589 ACCTTAAACTTTTCCAAAATTACCTTTTGTCCCCTAAATTTTTTCAAAATTGCATTTTA
1 ACCTTAAACTTTTCCAAAATTACATTTTGACCCC-AAACTTTTTCAAAATTACATTTTA
** *
87648 ATCCTCGAACTTTTCCAAAATCACATTTT-ACCCCCAAACT
1 A-CCTTAAACTTTTCCAAAATTACATTTTGA-CCCCAAACT
87688 CTCCTAAAAT
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
57 1 0.01
58 35 0.42
59 21 0.25
60 27 0.32
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.40
Consensus pattern (58 bp):
ACCTTAAACTTTTCCAAAATTACATTTTGACCCCAAACTTTTTCAAAATTACATTTTA
Found at i:87704 original size:59 final size:58
Alignment explanation
Indices: 87530--87788 Score: 202
Period size: 59 Copynumber: 4.4 Consensus size: 58
87520 TTGCATAATG
* *
87530 ACCTCTAAACTTTTCCAAAATTACATTTTGACCCTCAAACTTTTTAAAATTATATTTTA
1 ACCTC-AAACTTTTCCAAAATTACATTTTGACCCCCAAACTTTTTAAAATTACATTTTA
* * * * * *
87589 ACCTTAAACTTTTCCAAAATTACCTTTTGTCCCCTAAATTTTTTCAAAATTGCATTTTA
1 ACCTCAAACTTTTCCAAAATTACATTTTGACCCCCAAACTTTTT-AAAATTACATTTTA
* * ** *
87648 ATCCTCGAACTTTTCCAAAATCACATTTT-ACCCCCAAACTCTCCTAAAATCACATTTTGA
1 A-CCTCAAACTTTTCCAAAATTACATTTTGACCCCCAAACT-TTTTAAAATTACATTTT-A
* * * * * * * * *
87708 CCCTCAAAC-TTTCTCGAGATAACATTTTGTTCTCCTAAACTTCTAAAAATTACATTTTGA
1 ACCTCAAACTTTTC-CAAAATTACATTTTG-ACCCCCAAACTTTTTAAAATTACATTTT-A
*
87768 TCC-CAAA-TTTTCCTAAAATTA
1 ACCTCAAACTTTTCC-AAAATTA
87789 TGTTTTAACC
Statistics
Matches: 157, Mismatches: 34, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
58 39 0.25
59 66 0.42
60 44 0.28
61 8 0.05
ACGTcount: A:0.33, C:0.24, G:0.03, T:0.39
Consensus pattern (58 bp):
ACCTCAAACTTTTCCAAAATTACATTTTGACCCCCAAACTTTTTAAAATTACATTTTA
Found at i:89081 original size:14 final size:13
Alignment explanation
Indices: 89062--89091 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
89052 TCACCCTTAA
89062 TATTATATATTACT
1 TATTATATATTA-T
89076 TATTATATATTAT
1 TATTATATATTAT
89089 TAT
1 TAT
89092 ACTAGTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTATATATTAT
Found at i:89331 original size:30 final size:31
Alignment explanation
Indices: 89273--89338 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
89263 TATATTATAA
89273 TAATAGTTATATATGTATTAATATTTTTA-G
1 TAATAGTTATATATGTATTAATATTTTTATG
89303 TAATAGTTATATAT-TA-TAATATTGTTTTATG
1 TAATAGTTATATATGTATTAATA-T-TTTTATG
89334 TAATA
1 TAATA
89339 ATAATATACT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
28 5 0.15
29 3 0.09
30 19 0.58
31 6 0.18
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (31 bp):
TAATAGTTATATATGTATTAATATTTTTATG
Found at i:89346 original size:31 final size:30
Alignment explanation
Indices: 89281--89346 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 30
89271 AATAATAGTT
* *
89281 ATATATGTATTAATATTTTTAGTAATAGTT
1 ATATATGTATTAATATTTTTAGTAATAATA
89311 ATATAT-TA-TAATATTGTTTTATGTAATAATA
1 ATATATGTATTAATA-T-TTTTA-GTAATAATA
89342 ATATA
1 ATATA
89347 CTAATTTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 5 0.16
29 3 0.10
30 11 0.35
31 12 0.39
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.52
Consensus pattern (30 bp):
ATATATGTATTAATATTTTTAGTAATAATA
Found at i:91282 original size:18 final size:17
Alignment explanation
Indices: 91251--91292 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
91241 TATGAAAAAT
91251 TATAGTTTATTATTTTTA
1 TATA-TTTATTATTTTTA
91269 TATATTTATATATTTTTA
1 TATATTTAT-TATTTTTA
*
91287 AATATT
1 TATATT
91293 GTTTTTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TATATTTATTATTTTTA
Found at i:92613 original size:18 final size:16
Alignment explanation
Indices: 92579--92627 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
92569 TCAATTGTAA
*
92579 TTAATTTAAAA-TT-T
1 TTAATTAAAAATTTAT
92593 TTAATTAATCAAATTTAT
1 TTAATTAA--AAATTTAT
92611 TTAATTAAAAATTTAT
1 TTAATTAAAAATTTAT
92627 T
1 T
92628 CTCATCCCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 7 0.23
16 12 0.40
17 2 0.07
18 9 0.30
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATTAAAAATTTAT
Found at i:92989 original size:14 final size:14
Alignment explanation
Indices: 92970--92998 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
92960 AGACGGTTGC
92970 CTAAGCATTGCCCA
1 CTAAGCATTGCCCA
92984 CTAAGCATTGCCCA
1 CTAAGCATTGCCCA
92998 C
1 C
92999 GTATACAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.38, G:0.14, T:0.21
Consensus pattern (14 bp):
CTAAGCATTGCCCA
Found at i:95783 original size:126 final size:126
Alignment explanation
Indices: 95514--95783 Score: 323
Period size: 126 Copynumber: 2.2 Consensus size: 126
95504 CATAACACTT
* * * *
95514 ATACATATA-GGTGCAGACAAGCTACCGGATGGTTGAGGATCCACAACCCTTCGCAGATAAAAGC
1 ATACATAGACGGTGCAAACAAGCTACCGGATGGTGGAGGATCCACAACCCTTCGCAAATAAAAGC
* * * * * * *
95578 TGTTAAAGAAAGTTGTGAATTCTCCGTATAAAAGTCGCAGTTGGAATTTGCTAAGCTGTGA
66 TGTCAAAGAAAATCGTAAATGCTCCATACAAAAGTCGCAGTTGGAATTTGCTAAGCTGTGA
* * * * *
95639 ATACATAGAGGGTGCAAACAAGCTACCGTATGGTGGAGGATCCACAATTCC-TCTCAAATGAAAG
1 ATACATAGACGGTGCAAACAAGCTACCGGATGGTGGAGGATCCACAA-CCCTTCGCAAATAAAAG
* *
95703 CTGTCAGAGAAAATCGTAAATGCTCCATACATATAGTCGCAGTTGGAATTTGCTTAAGCTGTGA
65 CTGTCAAAGAAAATCGTAAATGCTCCATACA-AAAGTCGCAGTTGGAATTTGC-TAAGCTGTGA
95767 ATACATAG-CGGT-CAAAC
1 ATACATAGACGGTGCAAAC
95784 GTATAGATAT
Statistics
Matches: 123, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
125 8 0.07
126 72 0.59
127 25 0.20
128 18 0.15
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (126 bp):
ATACATAGACGGTGCAAACAAGCTACCGGATGGTGGAGGATCCACAACCCTTCGCAAATAAAAGC
TGTCAAAGAAAATCGTAAATGCTCCATACAAAAGTCGCAGTTGGAATTTGCTAAGCTGTGA
Found at i:97429 original size:30 final size:29
Alignment explanation
Indices: 97390--97489 Score: 85
Period size: 30 Copynumber: 3.3 Consensus size: 29
97380 GGAAGTTTAG
* *
97390 GGGTCAAAATGTAAATTTGGAAAAGTCCAA
1 GGGTTAAAATGT-AATTTGGAAAAGTTCAA
* * * *
97420 GGGTTAAAATATGATTTTAGG-AAAGTTTAG
1 GGGTTAAAATGT-AATTT-GGAAAAGTTCAA
* *
97450 GGGTTAAAATGTGATTTCGAAGAAGTTCAA
1 GGGTTAAAATGTAATTTGGAA-AAGTTCAA
97480 GGGTTAAAAT
1 GGGTTAAAAT
97490 CAAATTTATG
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
28 1 0.02
29 4 0.07
30 47 0.87
31 2 0.04
ACGTcount: A:0.39, C:0.05, G:0.26, T:0.30
Consensus pattern (29 bp):
GGGTTAAAATGTAATTTGGAAAAGTTCAA
Found at i:97443 original size:31 final size:29
Alignment explanation
Indices: 97404--97489 Score: 93
Period size: 30 Copynumber: 2.9 Consensus size: 29
97394 CAAAATGTAA
*
97404 ATTTGGAAAAGTCCAAGGGTTAAAATATG
1 ATTTGGAAAAGTTCAAGGGTTAAAATATG
* * *
97433 ATTTTAGG-AAAGTTTAGGGGTTAAAATGTG
1 A-TTT-GGAAAAGTTCAAGGGTTAAAATATG
*
97463 ATTTCGAAGAAGTTCAAGGGTTAAAAT
1 ATTTGGAA-AAGTTCAAGGGTTAAAAT
97490 CAAATTTATG
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
28 1 0.02
29 5 0.11
30 38 0.83
31 2 0.04
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.31
Consensus pattern (29 bp):
ATTTGGAAAAGTTCAAGGGTTAAAATATG
Found at i:97449 original size:60 final size:60
Alignment explanation
Indices: 97373--97489 Score: 164
Period size: 60 Copynumber: 1.9 Consensus size: 60
97363 CAAAAATGTA
* *
97373 ATTTAAGGGAAGTTTAGGGGTCAAAATGTAAATTTGGAA-AAGTCCAAGGGTTAAAATATG
1 ATTTAAGGAAAGTTTAGGGGTCAAAATGT-AATTTCGAAGAAGTCCAAGGGTTAAAATATG
* * * *
97433 ATTTTAGGAAAGTTTAGGGGTTAAAATGTGATTTCGAAGAAGTTCAAGGGTTAAAAT
1 ATTTAAGGAAAGTTTAGGGGTCAAAATGTAATTTCGAAGAAGTCCAAGGGTTAAAAT
97490 CAAATTTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
59 7 0.14
60 43 0.86
ACGTcount: A:0.38, C:0.04, G:0.26, T:0.31
Consensus pattern (60 bp):
ATTTAAGGAAAGTTTAGGGGTCAAAATGTAATTTCGAAGAAGTCCAAGGGTTAAAATATG
Found at i:97505 original size:60 final size:60
Alignment explanation
Indices: 97382--97519 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 60
97372 AATTTAAGGG
* * *
97382 AAGTTTAGGGGTCAAAATGTAAATTTGGAAAAGTCCAAGGGTTAAAATATGATTTTAGGA
1 AAGTTTAGGGGTCAAAATGTAAATTTCGAAAAGTCCAAGGGTTAAAATATAATTTTAGAA
* * *
97442 AAGTTTAGGGGTTAAAATGT-GATTTCGAAGAAGTTCAAGGGTTAAAATCA-AA-TTTATGAA
1 AAGTTTAGGGGTCAAAATGTAAATTTCGAA-AAGTCCAAGGGTTAAAAT-ATAATTTTA-GAA
* * *
97502 AAGTGTAGAGGTCCAAAT
1 AAGTTTAGGGGTCAAAAT
97520 CAAATTTTTG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
59 11 0.17
60 53 0.82
61 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.25, T:0.30
Consensus pattern (60 bp):
AAGTTTAGGGGTCAAAATGTAAATTTCGAAAAGTCCAAGGGTTAAAATATAATTTTAGAA
Found at i:99899 original size:208 final size:206
Alignment explanation
Indices: 99524--100322 Score: 955
Period size: 208 Copynumber: 3.9 Consensus size: 206
99514 GGTGTTCGTA
** * * *
99524 ACTTCATCCTTTGGTCCACTTCTCTGTATCTTATCAGGAAGATGACCACTTCATTGTTTTAATCC
1 ACTTCATGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATCC
* * * * * *
99589 ACTTCTCTGTATCTCATCAGGAAGACGGATTTGGT-TCAGTTCTTTGTATCTCGTTAGGAAGATG
66 ACTTCTCTGTATCTCATCAAGAAGACGGATTTGGTCT-ACTTCTCTGTATCTCATCAAGAAGATG
*
99653 ACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAAGTTTCAC
130 ACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTG-AAGTCTCA-
* *
99718 TAC-ATTGAGCTTT
193 TTCGATTGAGCTTC
* * *
99731 ACTTCATGGAATTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATT
1 ACTTCAT-GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATC
* * * * * * *
99796 CACTTATATGTATCTCATTAGGAAGACGGATTTGGT-TCACTTCTCTGCATCTCGTCAAGAAAAT
65 CACTTCTCTGTATCTCATCAAGAAGACGGATTTGGTCT-ACTTCTCTGTATCTCATCAAGAAGAT
** * * ** *
99860 GACCACTTTATTATTTTGACTCACTTCTTTGTATCTCATCGGGAAGATGAGGTTTGAAGTCTCAT
129 GACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCAT
*
99925 TCGTATTGACCTTC
194 TCG-ATTGAGCTTC
* ** * * *
99939 GCCTT-ATTGATTTTATCTACTTCTCTGTATCTCATCAGGAAGATGACTGCGTCATTGATTTAAT
1 -ACTTCA-TGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTAAT
*
100003 CCACTTCTCTGTATCTCATCAAGAAGGCGGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGAT
64 CCACTTCTCTGTATCTCATCAAGAAGACGGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGAT
* *
100068 GACCGCTTTATTGCTTTGACCCACTTCTCTATATCTCATC-AGAAAGATGGGGTTTGAAGTCTCA
129 GACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAG-AAGATGGGGTTTGAAGTCTCA
100132 TTCGTATTGAGCTTC
193 TTCG-ATTGAGCTTC
* * * * *
100147 GCTTCAATGATTTTGTCTAC-T-TCTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTCAATC
1 ACTTC-ATGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATC
* * * * *
100210 CACTTCTTTGTATCTCATCAAGAAGACGAATTTAGTCTACTTCTCTGTATCTCATTAGGAAGATG
65 CACTTCTCTGTATCTCATCAAGAAGACGGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATG
* * * *
100275 ACTACTTTATTGCTTTGACCGACTTCTTTGCATCTCATCAAGAAGATG
130 ACCACTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATG
100323 ACCGCTTTAT
Statistics
Matches: 511, Mismatches: 71, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
206 139 0.27
207 21 0.04
208 345 0.68
209 6 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (206 bp):
ACTTCATGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATCC
ACTTCTCTGTATCTCATCAAGAAGACGGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGA
CCACTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTC
GATTGAGCTTC
Found at i:99905 original size:85 final size:85
Alignment explanation
Indices: 99749--99906 Score: 190
Period size: 85 Copynumber: 1.9 Consensus size: 85
99739 GAATTGGTCT
* * * * * *
99749 ACTTCTCTATATCTCATCAGGAAGATGACCGCTTCATTGTTTTAATTCACTTATATGTATCTCAT
1 ACTTCTCTACATCTCATCAAGAAAATGACCACTTCATTATTTTAACTCACTTATATGTATCTCAT
*
99814 TAGGAAGACGGATTTGGTTC
66 CAGGAAGACGGATTTGGTTC
* * * * * *
99834 ACTTCTCTGCATCTCGTCAAGAAAATGACCACTTTATTATTTTGACTCACTTCTTTGTATCTCAT
1 ACTTCTCTACATCTCATCAAGAAAATGACCACTTCATTATTTTAACTCACTTATATGTATCTCAT
*
99899 CGGGAAGA
66 CAGGAAGA
99907 TGAGGTTTGA
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
85 59 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (85 bp):
ACTTCTCTACATCTCATCAAGAAAATGACCACTTCATTATTTTAACTCACTTATATGTATCTCAT
CAGGAAGACGGATTTGGTTC
Found at i:100302 original size:85 final size:83
Alignment explanation
Indices: 100156--100320 Score: 217
Period size: 85 Copynumber: 2.0 Consensus size: 83
100146 CGCTTCAATG
* * *
100156 ATTTTGTCTACTTCTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTCAATCCACTTCTTTGT
1 ATTTAGTCTACTTCTGTATCTCATCAGGAAGATGACTACCTCATTGTTTCAATCCACTTCTTTGC
100221 ATCTCATCAAGAAGACGA
66 ATCTCATCAAGAAGACGA
* * * *
100239 ATTTAGTCTACTTCTCTGTATCTCATTAGGAAGATGACTACTTTATTGCTTT-GA-CCGACTTCT
1 ATTTAGTCTAC-T-TCTGTATCTCATCAGGAAGATGACTACCTCATTG-TTTCAATCC-ACTTCT
100302 TTGCATCTCATCAAGAAGA
62 TTGCATCTCATCAAGAAGA
100321 TGACCGCTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
83 10 0.14
84 3 0.04
85 55 0.77
86 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (83 bp):
ATTTAGTCTACTTCTGTATCTCATCAGGAAGATGACTACCTCATTGTTTCAATCCACTTCTTTGC
ATCTCATCAAGAAGACGA
Found at i:100320 original size:48 final size:48
Alignment explanation
Indices: 100248--100369 Score: 181
Period size: 48 Copynumber: 2.5 Consensus size: 48
100238 AATTTAGTCT
* *
100248 ACTTCTCTGTATCTCATTAGGAAGATGACTACTTTATTGCTTTGACCG
1 ACTTCTCTGTATCTCATTAAGAAGATGACCACTTTATTGCTTTGACCG
* * * * *
100296 ACTTCTTTGCATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCT
1 ACTTCTCTGTATCTCATTAAGAAGATGACCACTTTATTGCTTTGACCG
100344 ACTTCTCTGTATCTCATTAAGAAGAT
1 ACTTCTCTGTATCTCATTAAGAAGAT
100370 AAGGTTTGAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.39
Consensus pattern (48 bp):
ACTTCTCTGTATCTCATTAAGAAGATGACCACTTTATTGCTTTGACCG
Found at i:100421 original size:254 final size:254
Alignment explanation
Indices: 100042--100575 Score: 815
Period size: 254 Copynumber: 2.1 Consensus size: 254
100032 GATTTGGTCT
100042 ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTATATCTCAT
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTATATCTCAT
* ** * *
100107 CAGAAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCAATGATTTTGTCTAC-T-TC
66 AAGAAAGATAAGGTTTGAAGTCTCATTCGCATTGAGCTTCGCTTCAATGATTTGGTCTACTTCTC
* *
100170 TGTATCTCATCAGGAAGATGACTGCCTCATTGTTTCAATCCACTTCTTTGTATCTCATCAAGAAG
131 TGTATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCAC-TC-ATGTATCTCATCAAGAAG
* *
100235 ACGAATTTAGTCTACTTCTCTGTATCTCATTAGGAAGATGA-CTACTTTATTGCTTTGACCG
194 ACGAATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATGATCT-CTTTATTGCTTTGACCC
* * * *
100296 ACTTCTTTGCATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCTACTTCTCTGTATCTCAT
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTATATCTCA-
*
100361 TAAG-AAGATAAGGTTTGAAGTCTCATTCGCATTGAGCTTCGCTTCATTGATTTGGTCTACTTCT
65 TAAGAAAGATAAGGTTTGAAGTCTCATTCGCATTGAGCTTCGCTTCAATGATTTGGTCTACTTCT
* *
100425 CTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCTACTCATGTATCTCATCAGGAAGA
130 CTGTATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTCATGTATCTCATCAAGAAGA
* * * * *
100490 CGAATTTGGTTTACTTCTTTGTATCTCATCATGAAGATGATCTCTTTATTGTTTTGACCC
195 CGAATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATGATCTCTTTATTGCTTTGACCC
100550 ACTTCTCTGTATCTCATCAAGAAGAT
1 ACTTCTCTGTATCTCATCAAGAAGAT
100576 AGGGGTTTGA
Statistics
Matches: 253, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
254 202 0.80
255 8 0.03
256 43 0.17
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (254 bp):
ACTTCTCTGTATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCCACTTCTCTATATCTCAT
AAGAAAGATAAGGTTTGAAGTCTCATTCGCATTGAGCTTCGCTTCAATGATTTGGTCTACTTCTC
TGTATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTCATGTATCTCATCAAGAAGAC
GAATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATGATCTCTTTATTGCTTTGACCC
Found at i:100748 original size:209 final size:208
Alignment explanation
Indices: 100296--101115 Score: 961
Period size: 209 Copynumber: 3.9 Consensus size: 208
100286 GCTTTGACCG
* * *
100296 ACTTCTTTGCATCTCATCAAGAAGATGACCGCTTTATTGCTTTGACCTACTTCTCTGTATCTCAT
1 ACTTCTTTGCATCTCATCAGGAAGATGACCGCTTTATTGTTTTGACCCACTTCTCTGTATCTCAT
* * *
100361 TAAGAAGATAAGGTTTGAAGTCTCATTCGCATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTC
66 TAAGAAGATAAGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTC
* * *
100426 TGTATCTCATCAGGAAGATGACCGCCTCATTG-TTTCAATCTAC-TC-ATGTATCTCATCAGGAA
131 TGTATCTCATCAGGAAGATGACCGCTTCATTGATTT-AATCCACTTCTCTGTATCTCATCAGGAA
*
100488 GACGAATTTGGTTT
195 GACGAATTTGGTTC
* * * *
100502 ACTTCTTTGTATCTCATCATGAAGATGATCTCTTTATTGTTTTGACCCACTTCTCTGTATCTCAT
1 ACTTCTTTGCATCTCATCAGGAAGATGACCGCTTTATTGTTTTGACCCACTTCTCTGTATCTCAT
* * * * *
100567 CAAGAAGATAGGGGTTTGAATTTTCACTCACATTAAGCTTTGCTTCATTGATTTGGTCTACTTCT
66 TAAGAAGATA-AGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTGGTCTACTTCT
* * * * * * *
100632 ATGTATCTCATCAAGAAGATGATCGCTGCATTGATTTAATACACTTTTCTGTATCTAATCAGGAA
130 CTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAA
* *
100697 GGCGAATTTGGTCC
195 GACGAATTTGGTTC
* * * *
100711 ACTTCTTTGTATCTCATCAGGAATATGACCGCTTTATT-TCTTTGACCCAATTCTCTGTACCTCA
1 ACTTCTTTGCATCTCATCAGGAAGATGACCGCTTTATTGT-TTTGACCCACTTCTCTGTATCTCA
* * * * * * *
100775 TTAAGAAGATAGGGGTTTAAAGTTTCACTCACATTGAGCTCCGCTTCGTTGAATAGGTCCACTTC
65 TTAAGAAGATA-AGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTGGTCTACTTC
* * *
100840 TCTGTATCTCATCAGGAAGATGACCGCTTCTTTGTTTTGATCCACTTCTCTGTATCTCATCAGGA
129 TCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGA
*
100905 AGACGGATTTGGTTC
194 AGACGAATTTGGTTC
* * * * * * * *
100920 ATTTCTCTACATCTCATCAGAAAGATGACCACTTTATTGCTTCT-ACCCGACTTATCTATATCTC
1 ACTTCTTTGCATCTCATCAGGAAGATGACCGCTTTATTG-TTTTGACCC-ACTTCTCTGTATCTC
* * * * * * *
100984 ATTAGGAAGATAAGGTTTGAAGTTTTACTCTCATGGAGCTTTGCTTCATTGTTTTGGT-TCGCTT
64 ATTAAGAAGATAAGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTGGTCT-ACTT
* * * * *
101048 CTTTGTATCTTATCAGGAAGATGACCGTTTCATT-ATTTGATCCACTTCTCTGTATCTTATCAGG
128 CTCTGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGG
101112 AAGA
193 AAGA
101116 TGAGGTTTGA
Statistics
Matches: 517, Mismatches: 88, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
206 68 0.13
207 80 0.15
208 37 0.07
209 307 0.59
210 24 0.05
211 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (208 bp):
ACTTCTTTGCATCTCATCAGGAAGATGACCGCTTTATTGTTTTGACCCACTTCTCTGTATCTCAT
TAAGAAGATAAGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTC
TGTATCTCATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTCTGTATCTCATCAGGAAG
ACGAATTTGGTTC
Found at i:101354 original size:42 final size:42
Alignment explanation
Indices: 101271--101589 Score: 362
Period size: 42 Copynumber: 7.7 Consensus size: 42
101261 CTCTTGACTA
* * * ** *
101271 GGGGTAAAAGATTGGAT-A-ATCTTCAATCTGTCTTATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATC
* *
101311 GGGGTGAGAGATTGGATGATGTCTTTAATCTGCCCCAAGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATC
* *
101353 GGGGTAAGAGATTGGATGATGTTTTCAATCTGCCCCATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATC
* * * * * * *
101395 GAGGTAAGAGATTAG-TG-TATCTTCAATCTACCTCACGATT
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATC
*
101435 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTAAGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATC
* * *
101477 GGGGTAAGAGATTGGATGATGTCTTTAATTTGCCCCATGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATC
* * *
101519 GAGGTAAGAGATTGG-TG-GGTCTTCAATCTGCCCCACGATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATC
* *
101559 GGGGTAAGAGATTGAATGATGTCTTCTATCT
1 GGGGTAAGAGATTGGATGATGTCTTCAATCT
101590 ACCTTATGGT
Statistics
Matches: 232, Mismatches: 41, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
40 77 0.33
41 9 0.04
42 146 0.63
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (42 bp):
GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATC
Found at i:101418 original size:124 final size:124
Alignment explanation
Indices: 101289--101589 Score: 451
Period size: 124 Copynumber: 2.4 Consensus size: 124
101279 AGATTGGATA
* * * * *
101289 ATCTTCAATCTGTCTTATGATCGGGGTGAGAGATTGGATGATGTCTTTAATCTGCCCCAAGATCG
1 ATCTTCAATCTGCCTCACGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATCG
*
101354 GGGTAAGAGATTGGATGATGT-TTTCAATCTGCCCCATGATCGAGGTAAGAGATTAGTGT
66 GGGTAAGAGATTGGATGATGTCTTT-AATCTGCCCCATGATCGAGGTAAGAGATTAGTGG
* * *
101413 ATCTTCAATCTACCTCACGATTGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTAAGATCG
1 ATCTTCAATCTGCCTCACGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATCG
* *
101478 GGGTAAGAGATTGGATGATGTCTTTAATTTGCCCCATGATCGAGGTAAGAGATTGGTGG
66 GGGTAAGAGATTGGATGATGTCTTTAATCTGCCCCATGATCGAGGTAAGAGATTAGTGG
* * * *
101537 GTCTTCAATCTGCCCCACGATCGGGGTAAGAGATTGAATGATGTCTTCTATCT
1 ATCTTCAATCTGCCTCACGATCGGGGTAAGAGATTGGATGATGTCTTCAATCT
101590 ACCTTATGGT
Statistics
Matches: 159, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
124 156 0.98
125 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (124 bp):
ATCTTCAATCTGCCTCACGATCGGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATCG
GGGTAAGAGATTGGATGATGTCTTTAATCTGCCCCATGATCGAGGTAAGAGATTAGTGG
Found at i:101439 original size:82 final size:84
Alignment explanation
Indices: 101271--101592 Score: 325
Period size: 82 Copynumber: 3.9 Consensus size: 84
101261 CTCTTGACTA
* * * ** * * * *
101271 GGGGTAAAAGATTGGAT-A-ATCTTCAATCTGTCTTATGATCGGGGTGAGAGATTGGATGATGTC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATCGGGGTAAGAGATTAGATGATATC
* * *
101334 TTTAATCTGCCCCAAGATC
66 TTCAATCTACCCCACGATC
* * *
101353 GGGGTAAGAGATTGGATGATGTTTTCAATCTGCCCCATGATCGAGGTAAGAGATTAG-TG-TATC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATCGGGGTAAGAGATTAGATGATATC
* *
101416 TTCAATCTACCTCACGATT
66 TTCAATCTACCCCACGATC
* * *
101435 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCTAAGATCGGGGTAAGAGATTGGATGATGTC
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATCGGGGTAAGAGATTAGATGATATC
* * * *
101500 TTTAATTTGCCCCATGATC
66 TTCAATCTACCCCACGATC
* * * *
101519 GAGGTAAGAGATTGG-TG-GGTCTTCAATCTGCCCCACGATCGGGGTAAGAGATT-GAATGATGT
1 GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATCGGGGTAAGAGATTAG-ATGATAT
*
101581 CTTCTATCTACC
65 CTTCAATCTACC
101593 TTATGGTTAG
Statistics
Matches: 200, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
81 1 0.00
82 133 0.67
83 7 0.04
84 59 0.29
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (84 bp):
GGGGTAAGAGATTGGATGATGTCTTCAATCTGCCCCAAGATCGGGGTAAGAGATTAGATGATATC
TTCAATCTACCCCACGATC
Found at i:102059 original size:49 final size:49
Alignment explanation
Indices: 101998--102227 Score: 191
Period size: 50 Copynumber: 4.7 Consensus size: 49
101988 CATCGTTGTG
* * * *
101998 ACCTCAATCTTTCCCTTCAAATCTTCAAGGTATCGAGTTCGTCATTACT
1 ACCTCAACCTTTCCCTTCAAATCTTCAAGGTATCGAGTTCGCCGTTGCT
* * * * ** *
102047 ACCTCAACCTTTCCCATCACATCTTCTAAGGTACCGGGTTTTCCGTTGCG
1 ACCTCAACCTTTCCCTTCAAATCTTC-AAGGTATCGAGTTCGCCGTTGCT
* * *
102097 GCCTCAACCTTTCCCTTCAAATCTTCATGGTGTC-AGGTTCGCCGTTGC-
1 ACCTCAACCTTTCCCTTCAAATCTTCAAGGTATCGA-GTTCGCCGTTGCT
* *
102145 AGCCTTAACCTTTCCCATTGC--ATCTTCTAAGGTATCGGGTTCGCCGTTG-T
1 A-CCTCAACCTTTCCC-TT-CAAATCTTC-AAGGTATCGAGTTCGCCGTTGCT
* * *
102195 GGCCACAACCTTTCCCTTCAAATCTTCATGGTA
1 -ACCTCAACCTTTCCCTTCAAATCTTCAAGGTA
102228 CCACGGCTCA
Statistics
Matches: 141, Mismatches: 29, Indels: 22
0.73 0.15 0.11
Matches are distributed among these distances:
48 1 0.01
49 64 0.45
50 75 0.53
51 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.16, T:0.34
Consensus pattern (49 bp):
ACCTCAACCTTTCCCTTCAAATCTTCAAGGTATCGAGTTCGCCGTTGCT
Found at i:102104 original size:50 final size:49
Alignment explanation
Indices: 101975--102229 Score: 213
Period size: 49 Copynumber: 5.2 Consensus size: 49
101965 TCATGTCTCT
** * * * *
101975 AAGGTACCGGGTTCATCGTTGTGACCTCAATCTTTCCCTTCAAATCTTC
1 AAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCAAATCTTC
* * * * * ** *
102024 AAGGTATCGAGTTCGTCATTACTACCTCAACCTTTCCCATCACATCTTC
1 AAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCAAATCTTC
** *
102073 TAAGGTACCGGGTTTTCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTC
1 -AAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCAAATCTTC
* ** * * * ***
102123 ATGGTGTCAGGTTCGCCGTTGCAGCCTTAACCTTTCCCATTGCATCTTC
1 AAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCAAATCTTC
* * * *
102172 TAAGGTATCGGGTTCGCCGTTGTGGCCACAACCTTTCCCTTCAAATCTTC
1 -AAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCAAATCTTC
*
102222 ATGGTACC
1 AAGGTACC
102230 ACGGCTCATT
Statistics
Matches: 158, Mismatches: 46, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
49 82 0.52
50 76 0.48
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.33
Consensus pattern (49 bp):
AAGGTACCGGGTTCGCCGTTGCGGCCTCAACCTTTCCCATCAAATCTTC
Found at i:102155 original size:99 final size:99
Alignment explanation
Indices: 101972--102227 Score: 320
Period size: 99 Copynumber: 2.6 Consensus size: 99
101962 TCATCATGTC
* * *
101972 TCTAAGGTACCGGGTTCAT-CGTTGTGACCTCAATCTTTCCCTTCAAATCTTCAAGGTATCGAGT
1 TCTAAGGTACCGGGTT-ATCCGTTGTGGCCTCAACCTTTCCCTTCAAATCTTCATGGTATCGAGT
*
102036 TCGTCATTACTACCTCAACCTTTCCCATCACATCT
65 TCGCCATTACTACCTCAACCTTTCCCATCACATCT
* * *
102071 TCTAAGGTACCGGGTTTTCCGTTGCGGCCTCAACCTTTCCCTTCAAATCTTCATGGTGTC-AGGT
1 TCTAAGGTACCGGGTTATCCGTTGTGGCCTCAACCTTTCCCTTCAAATCTTCATGGTATCGA-GT
* * * **
102135 TCGCCGTTGC-AGCCTTAACCTTTCCCATTGCATCT
65 TCGCCATTACTA-CCTCAACCTTTCCCATCACATCT
* ** *
102170 TCTAAGGTATCGGGTTCGCCGTTGTGGCCACAACCTTTCCCTTCAAATCTTCATGGTA
1 TCTAAGGTACCGGGTTATCCGTTGTGGCCTCAACCTTTCCCTTCAAATCTTCATGGTA
102228 CCACGGCTCA
Statistics
Matches: 136, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
98 3 0.02
99 133 0.98
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (99 bp):
TCTAAGGTACCGGGTTATCCGTTGTGGCCTCAACCTTTCCCTTCAAATCTTCATGGTATCGAGTT
CGCCATTACTACCTCAACCTTTCCCATCACATCT
Found at i:103085 original size:19 final size:18
Alignment explanation
Indices: 103063--103123 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 18
103053 TTGACCTCTC
103063 ATTTTCTTTTTCCTTTTTT
1 ATTTTCTTTTT-CTTTTTT
* *
103082 ATTTACTTTTTATTTTTTTT
1 ATTTTC-TTTT-TCTTTTTT
103102 ATTTT-TTTTTCTCTTTTT
1 ATTTTCTTTTTCT-TTTTT
103120 ATTT
1 ATTT
103124 ATTTATTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
17 2 0.06
18 13 0.37
19 5 0.14
20 14 0.40
21 1 0.03
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (18 bp):
ATTTTCTTTTTCTTTTTT
Found at i:103099 original size:8 final size:8
Alignment explanation
Indices: 103088--103141 Score: 54
Period size: 8 Copynumber: 6.4 Consensus size: 8
103078 TTTTATTTAC
103088 TTTTTATTT
1 TTTTTA-TT
103097 TTTTTATT
1 TTTTTATT
*
103105 TTTTTTTCT
1 TTTTTAT-T
103114 CTTTTTATT
1 -TTTTTATT
*
103123 TATTTATT
1 TTTTTATT
*
103131 TATTTATT
1 TTTTTATT
103139 TTT
1 TTT
103142 CTTCATCGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
8 25 0.64
9 8 0.21
10 6 0.15
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTATT
Found at i:103106 original size:26 final size:26
Alignment explanation
Indices: 103077--103131 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
103067 TCTTTTTCCT
*
103077 TTTTTATTT-ACTTTTTATTTTTTTTA
1 TTTTTATTTCACTTTTTA-TTTATTTA
* *
103103 TTTTTTTTTCTCTTTTTATTTATTTA
1 TTTTTATTTCACTTTTTATTTATTTA
103129 TTT
1 TTT
103132 ATTTATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (26 bp):
TTTTTATTTCACTTTTTATTTATTTA
Found at i:103133 original size:30 final size:27
Alignment explanation
Indices: 103087--103143 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 27
103077 TTTTTATTTA
*
103087 CTTTTTATTTTTTTTATTTTTTTTTCT
1 CTTTTTATTTTTTTTATTTATTTTTCT
103114 CTTTTTATTTATTTATTTATTTATTTTTCT
1 CTTTTTA-TT-TTT-TTTATTTATTTTTCT
103144 TCATCGAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 7 0.27
28 2 0.08
29 3 0.12
30 14 0.54
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (27 bp):
CTTTTTATTTTTTTTATTTATTTTTCT
Found at i:108081 original size:30 final size:30
Alignment explanation
Indices: 108003--108132 Score: 106
Period size: 29 Copynumber: 4.4 Consensus size: 30
107993 GAAAAAAAAT
* * *
108003 GGGGTCAAAATG-AAGTTTTTGGGAA-TTTC
1 GGGGTCAAAATGTAA-ATTTGGGGAAGTTTA
* *
108032 GAGGT-AAAATGTAATTTTGGGGAAGTTTA
1 GGGGTCAAAATGTAAATTTGGGGAAGTTTA
* **
108061 GGGGTCAACATGTAAATTTGGAAAAGTTTA
1 GGGGTCAAAATGTAAATTTGGGGAAGTTTA
* * *
108091 GGGGTTAAAATGT-GATTTTGGGAAGTTTA
1 GGGGTCAAAATGTAAATTTGGGGAAGTTTA
* *
108120 AGGGTTAAAATGT
1 GGGGTCAAAATGT
108133 GATTTTAGAG
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 15 0.18
29 37 0.45
30 31 0.37
ACGTcount: A:0.32, C:0.03, G:0.31, T:0.34
Consensus pattern (30 bp):
GGGGTCAAAATGTAAATTTGGGGAAGTTTA
Found at i:108118 original size:29 final size:29
Alignment explanation
Indices: 108019--108166 Score: 133
Period size: 30 Copynumber: 5.1 Consensus size: 29
108009 AAAATGAAGT
* * *
108019 TTTTGGGAA-TTTCGAGG-TAAAATGTAA
1 TTTTGGGAAGTTTAGGGGTTAAAATGTGA
* * *
108046 TTTTGGGGAAGTTTAGGGGTCAACATGTAA
1 TTTT-GGGAAGTTTAGGGGTTAAAATGTGA
* *
108076 ATTTGGAAAAGTTTAGGGGTTAAAATGTGA
1 TTTTGG-GAAGTTTAGGGGTTAAAATGTGA
*
108106 TTTTGGGAAGTTTAAGGGTTAAAATGTGA
1 TTTTGGGAAGTTTAGGGGTTAAAATGTGA
* *
108135 TTTTAGAGAAATTT-GAGGGTTAAAAT-TGA
1 TTTT-GGGAAGTTTAG-GGGTTAAAATGTGA
108164 TTT
1 TTT
108167 CATGGAAAGT
Statistics
Matches: 100, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
27 4 0.04
28 5 0.05
29 39 0.39
30 52 0.52
ACGTcount: A:0.32, C:0.02, G:0.28, T:0.37
Consensus pattern (29 bp):
TTTTGGGAAGTTTAGGGGTTAAAATGTGA
Found at i:108156 original size:59 final size:60
Alignment explanation
Indices: 108036--108166 Score: 153
Period size: 59 Copynumber: 2.2 Consensus size: 60
108026 AATTTCGAGG
* * * *
108036 TAAAATGTAATTTTGGGGAAGTTTAGGGGTCAACATGTAAATTTGGAAAAGTTTAGGGGT
1 TAAAATGTGATTTTGGGGAAGTTTAAGGGTCAAAATGTAAATTTAGAAAAGTTTAGGGGT
* * *
108096 TAAAATGTGATTTT-GGGAAGTTTAAGGGTTAAAATGTGATTTTAGAGAAA-TTT-GAGGGT
1 TAAAATGTGATTTTGGGGAAGTTTAAGGGTCAAAATGTAAATTTAGA-AAAGTTTAG-GGGT
108155 TAAAAT-TGATTT
1 TAAAATGTGATTT
108167 CATGGAAAGT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
58 7 0.11
59 39 0.63
60 16 0.26
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.37
Consensus pattern (60 bp):
TAAAATGTGATTTTGGGGAAGTTTAAGGGTCAAAATGTAAATTTAGAAAAGTTTAGGGGT
Found at i:108174 original size:29 final size:29
Alignment explanation
Indices: 108092--108190 Score: 96
Period size: 30 Copynumber: 3.3 Consensus size: 29
108082 AAAAGTTTAG
* *
108092 GGGTTAAAATGTGATTT-TGGGAAGTTTAA
1 GGGTTAAAATGTGATTTAT-GGAAATTTGA
108121 GGGTTAAAATGTGATTT-TAGAGAAATTTGA
1 GGGTTAAAATGTGATTTAT-G-GAAATTTGA
*
108151 GGGTTAAAAT-TGATTTCATGGAAAGTCTGA
1 GGGTTAAAATGTGATTT-ATGGAAA-TTTGA
*
108181 GGGTCAAAAT
1 GGGTTAAAAT
108191 CAAATTTCTA
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
29 29 0.48
30 31 0.51
31 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.34
Consensus pattern (29 bp):
GGGTTAAAATGTGATTTATGGAAATTTGA
Found at i:108182 original size:30 final size:30
Alignment explanation
Indices: 108083--108190 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 30
108073 TAAATTTGGA
108083 AAAGTTT-AGGGGTTAAAATGTGATTT-TGG
1 AAAGTTTGA-GGGTTAAAATGTGATTTATGG
* *
108112 GAAGTTTAAGGGTTAAAATGTGATTT-TAGAG
1 AAAGTTTGAGGGTTAAAATGTGATTTAT-G-G
108143 AAA-TTTGAGGGTTAAAAT-TGATTTCATGG
1 AAAGTTTGAGGGTTAAAATGTGATTT-ATGG
* *
108172 AAAGTCTGAGGGTCAAAAT
1 AAAGTTTGAGGGTTAAAAT
108191 CAAATTTCTA
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
29 34 0.50
30 30 0.44
31 4 0.06
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (30 bp):
AAAGTTTGAGGGTTAAAATGTGATTTATGG
Found at i:109579 original size:9 final size:9
Alignment explanation
Indices: 109565--109592 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
109555 CTTGTTGAGT
109565 TTGGGTTTG
1 TTGGGTTTG
109574 TTGGGTTTG
1 TTGGGTTTG
109583 TTGGGTTTG
1 TTGGGTTTG
109592 T
1 T
109593 AAAGCTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.43, T:0.57
Consensus pattern (9 bp):
TTGGGTTTG
Found at i:113033 original size:13 final size:13
Alignment explanation
Indices: 113007--113059 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
112997 TTCTAAAATA
113007 TATTACTA-TATT
1 TATTACTATTATT
113019 TATTACTATTATT
1 TATTACTATTATT
** *
113032 TATTGTTGTTATT
1 TATTACTATTATT
*
113045 TATTATTAATTATT
1 TATTACT-ATTATT
113059 T
1 T
113060 TAAATAAGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
12 8 0.24
13 20 0.59
14 6 0.18
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (13 bp):
TATTACTATTATT
Found at i:114029 original size:29 final size:30
Alignment explanation
Indices: 113972--114029 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
113962 TTACGACCCC
* * *
113972 TGAACTTTCCAAAAATTATATTTTAACCTA
1 TGAACCTTCCAAAAATCACATTTTAACCTA
*
114002 TGAACCTTCC-AAAATCACATTTTGACCT
1 TGAACCTTCCAAAAATCACATTTTAACCT
114030 TCAGACTTCG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.36
Consensus pattern (30 bp):
TGAACCTTCCAAAAATCACATTTTAACCTA
Found at i:114048 original size:30 final size:30
Alignment explanation
Indices: 114012--114217 Score: 234
Period size: 30 Copynumber: 6.9 Consensus size: 30
114002 TGAACCTTCC
* *
114012 AAAATCACATTTTGACCTTCAGACTTCGTA
1 AAAATCACATTTTGACCCTCAAACTTCGTA
* *
114042 AAAATCATATTTTGACCCTCAAACTTCTTA
1 AAAATCACATTTTGACCCTCAAACTTCGTA
* ** **
114072 AAAATTACATTACGACCCTCAAACTTTTTA
1 AAAATCACATTTTGACCCTCAAACTTCGTA
*
114102 AAAATCACATTTTGACCCTCAAACTTCGTC
1 AAAATCACATTTTGACCCTCAAACTTCGTA
* *
114132 AAAATCACATTTTGACCCTCGAACTTCATA
1 AAAATCACATTTTGACCCTCAAACTTCGTA
* * *
114162 AAAATTACATTTTAACCC-CTAAACTTCATA
1 AAAATCACATTTTGACCCTC-AAACTTCGTA
* * *
114192 AAAATTACATTTTAACCCTTAAACTT
1 AAAATCACATTTTGACCCTCAAACTT
114218 TTCCAAAATT
Statistics
Matches: 152, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
29 1 0.01
30 151 0.99
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.33
Consensus pattern (30 bp):
AAAATCACATTTTGACCCTCAAACTTCGTA
Found at i:114104 original size:60 final size:60
Alignment explanation
Indices: 114012--114246 Score: 231
Period size: 60 Copynumber: 3.9 Consensus size: 60
114002 TGAACCTTCC
* * * ** * *
114012 AAAATCACATTTTGACCTTCAGACTTCGTAAAAATCATATTTTGACCCTCAAACTTCTTA
1 AAAATTACATTTTGACCCTCAAACTTTTTAAAAATCACATTTTGACCCTCAAACTTCATA
** * *
114072 AAAATTACATTACGACCCTCAAACTTTTTAAAAATCACATTTTGACCCTCAAACTTCGTC
1 AAAATTACATTTTGACCCTCAAACTTTTTAAAAATCACATTTTGACCCTCAAACTTCATA
* * ** * *
114132 AAAATCACATTTTGACCCTCGAACTTCATAAAAATTACATTTTAACCC-CTAAACTTCATA
1 AAAATTACATTTTGACCCTCAAACTTTTTAAAAATCACATTTTGACCCTC-AAACTTCATA
* * ** * * *
114192 AAAATTACATTTTAACCCTTAAACTTTTCCAAAATTATATTTT-AACCTCAAACTT
1 AAAATTACATTTTGACCCTCAAACTTTTTAAAAATCACATTTTGACCCTCAAACTT
114247 TTCCAATTGC
Statistics
Matches: 143, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
59 10 0.07
60 133 0.93
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.34
Consensus pattern (60 bp):
AAAATTACATTTTGACCCTCAAACTTTTTAAAAATCACATTTTGACCCTCAAACTTCATA
Found at i:114136 original size:90 final size:90
Alignment explanation
Indices: 114012--114246 Score: 278
Period size: 90 Copynumber: 2.6 Consensus size: 90
114002 TGAACCTTCC
* * * *
114012 AAAATCACATTTTGACCTTCAGACTTCGTAAAAATCATATTTTGACCCTCAAACTTCTTAAAAAT
1 AAAATCACATTTTGACCCTCAAACTTCGTCAAAATCATATTTTGACCCTCAAACTTCATAAAAAT
* **
114077 TACATTACGA-CCCTCAAACTTTTTA
66 TACATTACAACCCCT-AAACTTCATA
* *
114102 AAAATCACATTTTGACCCTCAAACTTCGTCAAAATCACATTTTGACCCTCGAACTTCATAAAAAT
1 AAAATCACATTTTGACCCTCAAACTTCGTCAAAATCATATTTTGACCCTCAAACTTCATAAAAAT
**
114167 TACATTTTAACCCCTAAACTTCATA
66 TACATTACAACCCCTAAACTTCATA
* * * * * *
114192 AAAATTACATTTTAACCCTTAAACTT-TTCCAAAATTATATTTT-AACCTCAAACTT
1 AAAATCACATTTTGACCCTCAAACTTCGT-CAAAATCATATTTTGACCCTCAAACTT
114247 TTCCAATTGC
Statistics
Matches: 124, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
89 11 0.09
90 109 0.88
91 4 0.03
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.34
Consensus pattern (90 bp):
AAAATCACATTTTGACCCTCAAACTTCGTCAAAATCATATTTTGACCCTCAAACTTCATAAAAAT
TACATTACAACCCCTAAACTTCATA
Found at i:114226 original size:30 final size:29
Alignment explanation
Indices: 114011--114389 Score: 207
Period size: 30 Copynumber: 12.8 Consensus size: 29
114001 ATGAACCTTC
* * * *
114011 CAAAATCACATTTTGACCTTCAGACTTCGT
1 CAAAATTACATTTTGACCCTCAAACTT-TT
* * *
114041 AAAAATCATATTTTGACCCTCAAACTTCTT
1 CAAAATTACATTTTGACCCTCAAACTT-TT
* **
114071 AAAAATTACATTACGACCCTCAAACTTTTT
1 CAAAATTACATTTTGACCCTCAAAC-TTTT
* * *
114101 AAAAATCACATTTTGACCCTCAAACTTCGT
1 CAAAATTACATTTTGACCCTCAAACTT-TT
* * *
114131 CAAAATCACATTTTGACCCTCGAACTTCAT
1 CAAAATTACATTTTGACCCTCAAACTT-TT
* * *
114161 AAAAATTACATTTTAACCC-CTAAACTTCAT
1 CAAAATTACATTTTGACCCTC-AAACTT-TT
* * *
114191 AAAAATTACATTTTAACCCTTAAACTTTT
1 CAAAATTACATTTTGACCCTCAAACTTTT
* *
114220 CCAAAATTATATTTT-AACCTCAAACTTTT
1 -CAAAATTACATTTTGACCCTCAAACTTTT
* * * *
114249 C-CAATTGCATTTTTACTCC-CAAACTTTCC
1 CAAAATTACATTTTGAC-CCTCAAACTTT-T
* *
114278 CAAAATTACATTTTGACTCT-AAACTTATC
1 CAAAATTACATTTTGACCCTCAAACTT-TT
* * * *
114307 CAAAAATTATCATTTTG-CTCTCGAACATCT
1 C-AAAATTA-CATTTTGACCCTCAAACTTTT
* * *
114337 AAAAATTACTATTTTGCCCCT-AAA-TTTC
1 CAAAATTAC-ATTTTGACCCTCAAACTTTT
* * *
114365 CAAAAATCACATTTTCAACCTCAAA
1 C-AAAATTACATTTTGACCCTCAAA
114390 ATTTCCCAAA
Statistics
Matches: 281, Mismatches: 50, Indels: 37
0.76 0.14 0.10
Matches are distributed among these distances:
27 9 0.03
28 20 0.07
29 53 0.19
30 186 0.66
31 13 0.05
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.35
Consensus pattern (29 bp):
CAAAATTACATTTTGACCCTCAAACTTTT
Found at i:132659 original size:24 final size:24
Alignment explanation
Indices: 132619--132674 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
132609 TCGAGCTCGA
*
132619 TTCGTTTA-GCGTTCGCGAACATG
1 TTCGTTTATACGTTCGCGAACATG
132642 TTCGTTTATACGTTCGCGAACATG
1 TTCGTTTATACGTTCGCGAACATG
*
132666 TTTGTTTAT
1 TTCGTTTAT
132675 GTTCGTGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 8 0.27
24 22 0.73
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (24 bp):
TTCGTTTATACGTTCGCGAACATG
Found at i:144601 original size:33 final size:33
Alignment explanation
Indices: 144536--144603 Score: 86
Period size: 33 Copynumber: 2.0 Consensus size: 33
144526 TAAGTTTATT
144536 TATATTTATTTTTTTAAAAATTTAAATATGAATA
1 TATATTTATTTTTTT-AAAATTTAAATATGAATA
*
144570 TATATTTATATTTTTT-TAATTT-AATATTGAATA
1 TATATTTAT-TTTTTTAAAATTTAAATA-TGAATA
144603 T
1 T
144604 TTAATAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
32 4 0.13
33 12 0.39
34 9 0.29
35 6 0.19
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (33 bp):
TATATTTATTTTTTTAAAATTTAAATATGAATA
Found at i:144640 original size:15 final size:16
Alignment explanation
Indices: 144620--144662 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
144610 ATTTTATTAT
144620 TTTTATTTATTAA-AA
1 TTTTATTTATTAATAA
*
144635 TTTTATTTAGTAATAA
1 TTTTATTTATTAATAA
* *
144651 TATTATATATTA
1 TTTTATTTATTA
144663 CTACAGATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (16 bp):
TTTTATTTATTAATAA
Done.