Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001166.1 Kokia drynarioides strain JFW-HI SEQ_112491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7207
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.34


Found at i:2277 original size:54 final size:53

Alignment explanation


    Indices: 2195--2372  Score: 261
    Period size: 53  Copynumber: 3.4  Consensus size: 53

       2185 GTAAATGTAA

                  *                                *          *    
       2195 AAAGGTTCGATGACT-TAGTGTCATCGTGAGTTATATGATTCCTATTACGAATTT
          1 AAAGGTCCGATGACTCT-GTGTCATCGTGAGTTATATGAATCCTATTACGGA-TT

                          *                                *     
       2249 AAAGGTCCGATGACGCTGTGTCATCGTGAGTTATATGAATCCTATTATGGATT
          1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGGATT

                           *                                     
       2302 AAAGGTCCGATGACTTTGTGTCATCGTGAGTTATATGAATCCTA-TACGGATT
          1 AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGGATT

                  *            
       2354 AAAGGTTCGATGACTCTGT
          1 AAAGGTCCGATGACTCTGT

       2373 ACATGTTGAG


Statistics
Matches: 113,  Mismatches: 10, Indels: 4
        0.89            0.08        0.03

Matches are distributed among these distances:
  52   24  0.21
  53   44  0.39
  54   44  0.39
  55    1  0.01

ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35


Consensus pattern (53 bp):   
AAAGGTCCGATGACTCTGTGTCATCGTGAGTTATATGAATCCTATTACGGATT

Done.