genome.fa.s11667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011667.1 Kokia drynarioides strain JFW-HI SEQ_126659, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36339

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865--921	2	28.5	2	92	7	98	49	1	0	49	1.11
1453--1509	25	2.4	24	78	16	64	50	3	3	42	1.36
2992--3096	52	2.0	52	86	0	147	38	0	8	52	1.39
4400--4583	63	2.9	64	83	1	219	36	33	5	25	1.79
4408--4583	64	2.8	64	84	1	185	36	32	5	25	1.78
4815--4904	36	2.5	36	83	0	126	35	24	23	16	1.95
6240--6269	9	3.2	9	95	4	51	50	0	0	50	1.00
9875--10022	23	6.3	23	76	14	135	44	20	21	13	1.85
9876--10011	69	2.0	67	87	8	193	44	19	21	13	1.85
16874--16997	23	5.3	23	77	5	106	46	20	20	12	1.82
20906--21267	29	12.5	29	73	16	188	37	1	25	36	1.66
20914--21267	58	6.1	56	73	18	223	36	1	25	36	1.66
20907--21238	87	3.8	86	75	16	299	37	1	25	36	1.64
20872--21125	117	2.2	116	82	9	295	36	2	25	36	1.69
20907--21276	87	4.2	87	76	14	230	37	1	24	35	1.67
22317--22392	21	3.4	21	77	14	64	38	3	1	56	1.26
23143--23212	6	12.0	6	79	11	83	52	0	2	44	1.15
23158--23229	23	3.1	23	86	4	92	55	2	1	40	1.23
23138--23206	17	4.0	17	88	1	102	53	0	2	43	1.15
27240--27307	21	3.2	21	95	2	118	51	20	8	19	1.73
30833--30924	23	4.1	22	79	8	105	40	26	18	15	1.90
30835--30936	23	4.5	22	75	11	98	41	24	18	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30835--30936	46	2.2	46	84	3	143	41	24	18	15	1.90

Tables:   1

The End!