Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001167.1 Kokia drynarioides strain JFW-HI SEQ_112492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2720
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36


Found at i:2654 original size:51 final size:50

Alignment explanation


    Indices: 2539--2654  Score: 117
    Period size: 50  Copynumber: 2.3  Consensus size: 50

       2529 ATAAATATAA

                           *            *    *              * 
       2539 AATATTTATATAAAATACAAGATCTAAATAAAATAATATAAATAAATATT
          1 AATATTTATATAAAACACAAGATCTAAACAAAAAAATATAAATAAATACT

            *  *     *        * *                               
       2589 TATGTTTATGTAAAACACCATATCTAAACAAAACAAAT-TAAATAAAATACT
          1 AATATTTATATAAAACACAAGATCTAAACAAAA-AAATATAAAT-AAATACT

                     *     
       2640 AATATTTATTTAAAA
          1 AATATTTATATAAAA

       2655 TATCAGATCT


Statistics
Matches: 52,  Mismatches: 12, Indels: 3
        0.78            0.18        0.04

Matches are distributed among these distances:
  50   31  0.60
  51   21  0.40

ACGTcount: A:0.56, C:0.08, G:0.03, T:0.34


Consensus pattern (50 bp):   
AATATTTATATAAAACACAAGATCTAAACAAAAAAATATAAATAAATACT
Done.