Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011673.1 Kokia drynarioides strain JFW-HI SEQ_126665, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10271
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:108 original size:26 final size:25

Alignment explanation


    Indices: 59--108  Score: 64
    Period size: 26  Copynumber: 2.0  Consensus size: 25

         49 TATTTTCTGA

                *           *        
         59 TTTTTAATTTATTTAATTTATTAAC
          1 TTTTAAATTTATTTAAATTATTAAC

                                *    
         84 TTTTAAATTTATTTTAAATTGTTAA
          1 TTTTAAATTTA-TTTAAATTATTAA

        109 TATTTTATAC


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  25   10  0.48
  26   11  0.52

ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62


Consensus pattern (25 bp):   
TTTTAAATTTATTTAAATTATTAAC

Found at i:7712 original size:48 final size:48

Alignment explanation


    Indices: 7642--7802  Score: 259
    Period size: 48  Copynumber: 3.4  Consensus size: 48

       7632 TTAATGCAAG

                                                            
       7642 GCATTTAACAAACAAAACAGTTAATAATGCATATTACTAAACAAAGAT
          1 GCATTTAACAAACAAAACAGTTAATAATGCATATTACTAAACAAAGAT

                             *                    *         
       7690 GCATTTAACAAACAAAATAGTTAATAATGCATATTACTGAACAAAGAT
          1 GCATTTAACAAACAAAACAGTTAATAATGCATATTACTAAACAAAGAT

                               *     *     *    *           
       7738 GCATTTAACAAACAAAACACTTAATGATGCAGATTATTAAACAAAGAT
          1 GCATTTAACAAACAAAACAGTTAATAATGCATATTACTAAACAAAGAT

                        *    
       7786 GCATTTAACAAAAAAAA
          1 GCATTTAACAAACAAAA

       7803 ACTTAATGAA


Statistics
Matches: 104,  Mismatches: 9, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  48  104  1.00

ACGTcount: A:0.52, C:0.14, G:0.09, T:0.25


Consensus pattern (48 bp):   
GCATTTAACAAACAAAACAGTTAATAATGCATATTACTAAACAAAGAT
Done.