genome.fa.s11676.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011676.1 Kokia drynarioides strain JFW-HI SEQ_126668, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22316

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609--648	18	2.2	18	90	0	62	57	0	0	42	0.98
609--661	3	17.7	3	84	0	52	56	0	0	43	0.99
1755--1881	30	4.3	29	72	8	87	34	22	2	40	1.67
1864--2169	29	10.5	29	68	14	166	33	25	3	37	1.73
1807--2267	117	4.0	113	76	10	380	33	24	3	37	1.73
1839--2236	58	6.8	59	80	7	350	33	25	3	37	1.73
6023--6082	5	12.4	5	77	19	56	23	23	11	41	1.87
6025--6083	24	2.5	24	94	0	100	23	25	11	38	1.89
13496--13530	18	1.9	18	94	0	61	20	11	11	57	1.64
13966--14354	49	7.9	48	73	13	283	37	19	25	16	1.93
13966--14496	99	5.4	99	81	5	584	37	19	25	16	1.93
14021--14496	192	2.4	193	82	6	568	37	20	25	16	1.93
14920--15035	6	19.8	6	69	15	82	41	3	3	51	1.35
14939--15009	17	3.8	17	75	21	70	40	2	2	53	1.30
14920--14994	23	3.2	23	90	3	114	41	1	2	54	1.23
14962--15023	17	3.6	17	79	10	65	40	3	4	51	1.39
15062--15257	97	2.0	97	98	0	383	39	26	10	23	1.87
15869--15927	3	19.7	3	85	0	73	59	0	0	40	0.97
15880--15996	12	9.5	13	70	15	63	57	1	5	35	1.31
17078--17162	30	2.8	30	83	1	80	41	20	2	36	1.65
17113--17404	59	5.0	58	78	10	165	35	21	2	40	1.65
17148--17535	59	6.7	58	74	15	224	35	21	1	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17117--17412	29	10.1	29	68	19	143	35	21	2	40	1.65
17117--17412	30	10.1	30	68	17	158	35	21	2	40	1.65
17412--17565	30	5.2	30	72	14	104	36	24	1	37	1.67
17423--17565	59	2.4	59	78	10	139	37	25	1	35	1.65
17550--17610	27	2.2	27	88	8	88	29	32	8	29	1.86
18767--18820	26	2.1	26	90	10	85	37	1	20	40	1.63
18784--18834	25	2.0	25	84	0	66	39	1	13	45	1.55
19106--19236	30	4.3	29	83	10	140	39	22	4	33	1.74
19115--19234	61	2.0	60	80	11	138	41	20	4	33	1.72
21685--21711	14	1.9	14	100	0	54	74	0	0	25	0.83
21931--21980	19	2.7	18	77	20	50	62	4	2	32	1.25
22131--22170	21	2.0	20	85	5	53	47	2	0	50	1.14

Tables:   1

The End!