genome.fa.s11679.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011679.1 Kokia drynarioides strain JFW-HI SEQ_126671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161215

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4584--4904	115	2.8	114	91	2	500	33	18	24	23	1.97
4804--5403	209	2.9	206	86	2	781	36	20	23	20	1.96
5740--5832	17	5.4	17	83	8	116	43	2	2	52	1.25
5740--5832	35	2.7	35	88	3	125	43	2	2	52	1.25
6575--6636	3	20.0	3	86	6	79	62	0	0	37	0.95
6575--6636	25	2.5	25	86	2	90	62	0	0	37	0.95
7723--8068	29	11.8	29	73	13	248	33	28	4	32	1.77
7724--8073	116	3.0	117	84	9	421	33	29	4	32	1.78
7724--8073	58	6.0	57	77	11	311	33	29	4	32	1.78
9400--9438	20	2.0	20	89	0	60	43	5	28	23	1.75
12587--12625	9	4.3	9	100	0	78	53	10	23	12	1.69
14691--14729	20	1.9	21	89	5	62	38	7	0	53	1.30
15969--16022	22	2.4	22	68	3	54	42	3	3	50	1.38
19519--19556	5	7.6	5	93	0	58	42	23	18	15	1.89
23099--23164	31	2.2	29	84	10	80	40	13	6	39	1.69
23118--23188	29	2.3	30	83	11	83	45	12	7	35	1.70
23705--23749	23	2.0	23	86	0	63	48	2	2	46	1.26
23757--23812	29	1.9	29	85	7	78	62	1	3	32	1.23
23975--24049	34	2.2	34	100	0	150	28	0	5	66	1.13
23975--24036	20	3.4	20	66	25	64	27	0	6	66	1.16
24240--24454	10	22.4	9	67	18	64	58	4	1	35	1.28
24918--24954	19	1.9	19	88	0	56	56	5	2	35	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29418--29447	15	2.0	15	100	0	60	46	13	6	33	1.69
29996--30052	18	3.2	18	70	12	55	28	1	5	64	1.25
31585--31876	30	9.9	29	79	6	293	32	3	29	34	1.75
31585--31875	59	4.9	59	84	0	341	32	3	29	34	1.75
33748--33941	99	2.0	99	84	6	259	18	30	15	35	1.92
33761--34284	49	10.8	48	70	10	185	16	32	16	33	1.92
33946--34284	50	6.8	50	74	5	267	16	33	17	33	1.92
33761--34291	187	2.8	192	80	5	502	17	32	16	33	1.93
33948--34273	99	3.3	98	77	5	352	16	33	17	33	1.92
33948--34314	99	3.7	97	76	6	344	17	31	17	33	1.93
35133--35176	19	2.3	19	84	0	52	45	2	6	45	1.42
36072--36173	16	5.8	16	68	28	64	10	17	32	39	1.84
36088--36190	21	5.4	20	66	29	73	11	16	32	39	1.85
36070--36190	37	3.3	37	94	0	215	11	17	31	39	1.85
44638--45003	30	12.3	30	77	7	241	37	1	24	37	1.64
44638--45022	59	6.5	60	78	8	385	36	1	24	37	1.64
44650--44996	180	1.9	179	84	5	468	36	1	24	37	1.65
48882--48913	5	6.2	5	96	3	55	56	3	40	0	1.15
55770--55824	14	3.8	14	75	15	58	1	34	0	63	1.05
59412--59453	21	1.9	23	85	9	61	35	19	11	33	1.88
60503--60528	7	3.7	7	100	0	52	61	11	26	0	1.30
60891--60938	15	3.1	15	78	18	53	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60888--60930	18	2.4	18	92	7	70	44	0	0	55	0.99
64334--64513	30	6.2	29	69	14	102	30	3	26	40	1.72
64425--64525	28	3.5	28	78	9	89	33	2	23	39	1.70
64388--64613	29	7.7	29	75	11	135	33	3	26	36	1.72
64476--64613	29	4.6	31	78	11	139	34	3	26	34	1.74
65682--65718	10	3.5	11	78	14	51	40	0	0	59	0.97
65680--65720	20	2.0	21	95	4	75	41	0	0	58	0.98
66301--66347	17	2.8	17	93	0	76	57	0	2	40	1.11
66762--67609	39	21.8	38	72	6	516	25	20	30	22	1.98
66748--67609	78	11.1	78	83	1	924	26	20	30	22	1.98
76588--76626	20	2.0	20	84	0	51	25	25	5	43	1.75
77729--77772	23	1.9	23	86	9	63	43	0	9	47	1.35
77752--77795	13	3.2	13	87	9	61	52	0	4	43	1.22
78926--78959	17	2.0	17	88	0	50	50	2	14	32	1.58
82386--82692	29	10.5	28	71	14	176	33	2	26	37	1.71
82366--82545	90	2.0	88	82	6	220	30	2	27	39	1.71
84505--84540	17	2.1	17	89	0	54	52	2	2	41	1.30
90922--90952	14	2.1	15	94	5	55	77	0	0	22	0.77
114483--114521	2	20.0	2	94	5	71	48	0	0	51	1.00
114683--114748	24	2.8	24	81	9	89	28	7	4	59	1.45
122353--122423	28	2.5	28	71	13	65	49	7	2	40	1.45
123989--124055	32	2.1	32	91	0	107	53	8	17	19	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126485--126534	15	3.4	15	71	15	50	36	10	2	52	1.47
145367--145395	14	2.1	14	100	0	58	68	0	6	24	1.13
145710--145909	28	6.9	29	88	5	253	32	4	30	33	1.78
145703--145909	30	7.1	29	87	4	240	32	4	29	33	1.77
146615--146657	23	2.0	21	86	9	59	25	11	0	62	1.29
147722--147788	17	3.9	17	86	0	80	52	2	0	44	1.16
147724--147809	6	15.0	6	73	13	65	54	3	0	41	1.17
147724--147837	34	3.2	34	73	16	104	55	4	0	40	1.20
147742--147809	23	3.0	22	82	8	73	57	4	0	38	1.19
147743--147838	17	5.6	17	78	7	88	58	5	0	36	1.21
147749--147810	23	2.7	22	85	7	79	59	4	0	35	1.19
147743--147819	11	6.8	11	73	16	59	58	5	0	36	1.21
149685--149754	31	2.3	31	80	5	79	30	10	17	42	1.81
149905--149973	29	2.3	30	87	9	97	39	14	10	36	1.80
150090--150123	16	2.1	16	89	10	52	50	8	0	41	1.34
154328--154370	11	3.9	11	78	0	50	62	6	9	20	1.48
155437--155469	18	1.9	17	88	11	50	72	0	12	15	1.12

Tables:   1

The End!