genome.fa.s11680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011680.1 Kokia drynarioides strain JFW-HI SEQ_126672, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152090

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5924--5949	13	2.0	13	100	0	52	38	15	7	38	1.76
6561--6598	19	2.0	19	94	0	67	60	10	7	21	1.54
6965--7129	81	2.0	81	98	0	321	27	30	13	27	1.94
11046--11087	18	2.3	18	100	0	84	14	16	26	42	1.86
15204--15253	17	2.8	19	79	14	61	26	0	0	74	0.83
15194--15249	11	5.8	10	71	28	50	26	0	1	71	0.96
15412--15458	22	2.1	23	88	4	69	59	0	2	38	1.09
15417--15469	24	2.3	23	83	9	63	62	0	0	37	0.96
19411--19445	11	3.0	12	83	8	54	54	2	0	42	1.15
23203--23391	58	3.2	59	76	10	183	35	5	26	32	1.80
23288--23683	29	13.5	28	69	17	175	35	5	24	35	1.77
23289--23693	88	4.6	87	75	12	346	35	4	24	35	1.77
23289--23683	59	6.7	58	78	7	343	35	4	24	35	1.77
24450--24519	12	5.5	12	76	17	52	38	5	2	52	1.40
25140--25198	17	3.5	17	83	0	82	57	5	1	35	1.31
25140--25204	34	1.9	34	96	0	121	56	7	1	33	1.37
25669--25876	115	1.8	115	92	2	355	23	24	19	32	1.97
25775--26281	206	2.5	206	87	5	715	23	22	18	35	1.95
26522--26717	101	1.9	101	85	0	266	30	18	16	34	1.93
26806--27043	50	4.8	50	70	12	170	15	24	20	40	1.90
26950--27040	47	1.9	47	86	0	128	16	25	20	37	1.93
26876--27053	96	1.8	98	84	6	245	14	25	19	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26867--27088	49	4.6	48	76	6	169	15	25	20	38	1.91
26876--27088	96	2.2	97	81	4	232	15	25	19	39	1.91
28399--28479	31	2.7	31	83	7	87	4	16	2	76	1.06
28409--28479	31	2.3	31	87	4	99	4	16	2	76	1.07
34114--34371	29	8.8	28	73	15	166	34	4	24	37	1.75
34108--34361	59	4.4	56	79	10	244	34	3	25	37	1.73
38469--38493	12	2.1	12	100	0	50	8	0	0	92	0.40
39420--39696	30	9.3	29	81	8	281	35	21	2	39	1.69
39409--39696	90	3.2	88	77	8	323	35	22	2	39	1.69
39396--39716	60	5.4	57	73	10	198	35	22	3	39	1.70
42942--43421	49	9.8	50	71	10	307	38	17	24	19	1.93
42936--43499	98	5.8	98	82	2	634	38	17	24	19	1.93
45403--45487	23	3.7	23	78	6	82	41	21	21	16	1.90
46102--46132	10	2.9	11	90	9	55	19	9	6	64	1.45
47957--47987	10	2.9	11	90	9	55	19	9	6	64	1.45
54401--54551	22	6.5	22	79	11	158	9	21	24	43	1.83
54458--54553	26	3.8	26	83	9	119	8	25	22	43	1.81
54417--54554	74	1.9	70	89	5	213	8	22	24	44	1.81
59392--59516	22	5.5	22	89	5	169	9	22	27	40	1.85
62306--62437	55	2.5	53	85	8	180	34	23	19	22	1.97
62336--62445	55	2.0	55	100	0	220	32	23	20	23	1.98
67035--67182	58	2.6	58	80	4	172	39	17	18	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67040--67184	29	5.0	30	80	5	154	39	17	19	23	1.92
67249--67393	40	3.6	40	70	7	132	24	17	19	38	1.92
67842--67952	53	2.1	53	81	3	125	30	35	13	20	1.91
74338--74382	21	2.1	21	84	8	56	75	0	4	20	0.97
75206--75251	24	1.9	24	86	0	65	54	0	2	43	1.12
77729--77772	22	2.0	23	81	4	54	59	2	4	34	1.30
79092--79486	58	6.7	57	80	5	325	36	6	23	34	1.80
79152--79488	29	11.6	29	67	9	150	36	6	22	34	1.80
79090--79486	117	3.4	117	77	11	334	36	6	22	34	1.80
81310--81338	14	2.0	15	93	6	51	20	6	20	51	1.70
81371--81414	17	2.6	17	92	0	79	59	2	0	38	1.10
81355--81403	23	2.1	24	92	3	82	57	2	2	38	1.22
81365--81414	6	8.7	6	80	8	59	58	2	0	40	1.10
82601--82678	6	12.8	6	73	8	68	41	1	1	56	1.15
82608--82677	17	3.8	18	90	7	106	38	1	1	58	1.16
83448--83496	24	2.0	24	84	0	62	53	4	6	36	1.45
84633--84859	30	7.7	29	72	18	150	36	25	3	34	1.75
84673--84830	30	5.5	29	78	11	173	36	25	3	34	1.72
84652--85041	58	6.6	59	77	11	265	33	26	4	35	1.78
84825--85008	61	3.0	61	79	6	178	32	23	5	38	1.78
84905--85007	29	3.5	28	70	18	84	36	27	3	32	1.75
84816--85042	59	3.8	59	79	8	201	32	25	5	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105897--105943	18	2.6	18	89	0	67	4	10	34	51	1.56
105910--105943	6	5.7	6	100	0	68	0	14	35	50	1.44
113834--113898	31	2.2	30	78	10	73	40	4	13	41	1.66
126816--126878	27	2.3	27	86	0	90	34	17	36	11	1.85
127426--127457	3	10.3	3	93	6	55	65	0	0	34	0.93
146250--146291	22	1.9	22	90	9	68	21	7	7	64	1.43
151335--151382	25	1.9	25	91	0	78	31	8	18	41	1.80

Tables:   1

The End!