Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011685.1 Kokia drynarioides strain JFW-HI SEQ_126678, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6138
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:1258 original size:28 final size:28

Alignment explanation


    Indices: 1227--1307  Score: 108
    Period size: 28  Copynumber: 2.9  Consensus size: 28

       1217 ATTCTATTAT

                                        
       1227 TTTGATTTTGCATTTTTAATTTGAGAAG
          1 TTTGATTTTGCATTTTTAATTTGAGAAG

                     *               *  
       1255 TTTGATTTTTCATTTTTAATTTGAGTAG
          1 TTTGATTTTGCATTTTTAATTTGAGAAG

            **                 *     
       1283 GCTGATTTTGCATTTTCTATTTTGA
          1 TTTGATTTTGCATTTT-TAATTTGA

       1308 ACATTTTTAA


Statistics
Matches: 46,  Mismatches: 6, Indels: 1
        0.87            0.11        0.02

Matches are distributed among these distances:
  28   39  0.85
  29    7  0.15

ACGTcount: A:0.21, C:0.06, G:0.16, T:0.57


Consensus pattern (28 bp):   
TTTGATTTTGCATTTTTAATTTGAGAAG
Done.