genome.fa.s11686.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011686.1 Kokia drynarioides strain JFW-HI SEQ_126679, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  207212

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038--1187	23	6.4	23	79	12	103	12	25	23	39	1.89
1058--1159	45	2.2	46	79	5	118	11	23	26	38	1.89
7486--7532	2	23.5	2	100	0	94	48	0	0	51	1.00
8699--8741	18	2.3	19	80	8	52	34	18	6	39	1.78
8699--8741	19	2.3	18	80	15	52	34	18	6	39	1.78
10526--10552	10	2.7	10	100	0	54	18	14	22	44	1.86
12293--12342	22	2.3	21	90	10	82	44	26	20	10	1.82
14531--14555	13	1.9	13	100	0	50	48	12	0	40	1.40
15942--15992	24	2.1	24	85	3	66	33	5	3	56	1.42
40548--40590	11	3.8	11	82	17	61	32	2	0	65	1.06
40845--40900	26	2.2	26	83	0	67	57	1	28	12	1.46
44812--44854	22	1.9	24	81	13	56	39	9	2	48	1.48
50849--51268	207	2.0	207	99	0	831	25	25	18	30	1.98
61868--61996	23	5.5	22	84	5	123	10	21	23	44	1.84
61871--61995	46	2.7	47	81	6	146	11	22	22	44	1.84
66321--66512	96	2.0	96	81	9	223	38	13	18	30	1.89
66808--67033	29	7.7	29	83	9	237	34	2	26	35	1.71
67017--67048	15	2.1	15	100	0	64	37	0	25	37	1.56
66960--67105	72	2.0	73	86	4	206	32	1	28	37	1.66
66989--67073	44	2.0	44	90	2	136	31	0	28	40	1.57
67032--67251	29	7.6	29	81	9	234	32	2	27	37	1.71
66901--67139	130	1.8	131	84	6	333	31	1	28	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67039--67251	58	3.7	57	85	7	259	31	2	27	38	1.71
69066--69108	17	2.6	16	89	10	68	60	2	0	37	1.10
75484--76166	365	1.9	353	85	6	927	45	6	4	43	1.51
75924--75999	11	6.8	11	72	24	61	55	1	1	42	1.16
75892--75998	19	5.8	18	73	14	76	53	2	1	42	1.26
76083--76112	15	2.0	15	93	0	51	36	3	0	60	1.14
77772--77848	29	2.6	30	78	13	88	57	2	7	32	1.41
82502--82559	21	2.8	21	75	19	66	55	3	0	41	1.17
90859--90904	23	2.0	23	86	0	65	34	19	13	32	1.90
100187--100216	6	5.0	6	91	0	51	13	0	3	83	0.77
108454--108486	4	8.2	4	100	0	66	51	48	0	0	1.00
118863--118920	30	1.9	31	86	10	84	65	8	0	25	1.21
121553--121623	23	3.1	22	82	15	74	42	1	4	52	1.29
121586--121640	28	2.0	27	82	10	67	47	0	1	50	1.11
121591--121640	23	2.2	23	82	7	57	48	0	2	50	1.12
123263--123317	28	2.0	27	86	13	76	47	23	5	23	1.72
133587--133635	15	3.3	15	79	0	53	18	67	4	10	1.36
133705--133751	6	7.8	6	95	0	76	17	70	2	10	1.26
136679--136743	28	2.2	29	81	10	71	53	7	0	38	1.30
140991--141044	15	3.3	15	74	18	54	44	0	1	53	1.11
140989--141056	34	2.1	32	88	5	100	48	0	2	48	1.16
142863--142918	26	2.2	26	100	0	112	39	17	7	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152139--152241	51	2.0	51	83	7	129	33	12	24	29	1.92
164059--164083	3	8.3	3	100	0	50	64	0	36	0	0.94
170260--170319	22	2.7	23	76	2	59	46	1	6	45	1.39
201785--201814	13	2.2	14	94	5	53	26	16	16	40	1.90
205357--205387	12	2.6	12	100	0	62	19	48	19	12	1.81
206052--206076	13	1.9	13	100	0	50	40	0	0	60	0.97

Tables:   1

The End!