genome.fa.s11687.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011687.1 Kokia drynarioides strain JFW-HI SEQ_126680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338835

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428--663	52	4.6	52	86	2	307	33	24	15	25	1.95
14268--14533	26	10.2	26	81	6	256	24	21	19	34	1.96
18228--18291	15	4.0	15	76	21	58	53	3	0	43	1.16
18558--18588	2	15.5	2	93	0	53	54	0	0	45	0.99
22180--22215	18	2.0	18	100	0	72	44	16	16	22	1.86
35799--35917	58	2.1	57	85	4	159	47	18	0	33	1.55
36649--36768	58	2.1	58	87	3	170	46	17	0	35	1.54
38979--39008	2	15.0	2	100	0	60	50	0	0	50	1.00
45008--45056	22	2.2	22	96	0	89	28	0	2	69	1.00
47489--47535	16	2.9	16	84	6	60	42	2	0	55	1.12
47527--47595	34	2.0	34	81	15	81	56	1	2	39	1.23
47624--47656	17	2.1	16	88	11	50	33	0	0	66	0.92
53116--53179	22	3.0	21	84	11	76	40	0	4	54	1.21
55764--55803	17	2.4	16	84	15	55	57	5	30	7	1.48
60326--60368	13	3.4	13	75	18	54	51	0	2	46	1.13
60323--60366	14	3.4	14	75	18	58	50	0	2	47	1.13
60323--60372	25	2.0	25	100	0	100	52	0	4	44	1.20
61321--61408	26	3.4	26	76	10	99	39	18	18	23	1.92
61509--61590	29	2.8	29	83	0	110	45	25	10	18	1.82
71228--71252	13	1.9	13	100	0	50	40	16	16	28	1.89
72207--72252	23	2.0	23	100	0	92	34	4	8	52	1.52
75278--75315	19	2.0	20	89	5	60	28	13	18	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75977--76036	29	2.0	30	87	3	86	26	13	28	31	1.94
83810--83874	32	2.0	32	84	0	85	41	9	6	43	1.61
84367--84417	16	3.3	15	77	22	52	54	0	5	39	1.24
84521--84554	17	2.0	17	88	11	52	55	0	0	44	0.99
96302--96335	13	2.6	13	90	0	59	29	14	29	26	1.95
97708--97807	36	2.8	36	82	11	125	37	17	26	20	1.93
98354--98412	24	2.6	24	81	7	70	15	6	35	42	1.73
112628--112991	180	2.0	182	93	1	624	37	21	14	26	1.91
117694--117745	20	2.6	20	87	0	77	32	7	11	48	1.68
130323--130350	14	2.0	14	100	0	56	28	28	14	28	1.95
136114--136156	21	2.0	21	95	0	77	39	13	32	13	1.85
136625--136669	17	2.6	17	82	0	54	20	20	13	46	1.83
140062--140105	15	2.9	15	82	3	52	52	11	6	29	1.63
140779--140804	12	2.2	12	100	0	52	42	15	7	34	1.75
148495--148566	17	4.2	17	78	7	65	22	23	9	44	1.82
154522--154571	19	2.7	20	77	20	54	52	0	2	46	1.12
158219--158288	34	2.1	34	89	5	106	47	10	20	22	1.79
180275--180313	18	2.2	17	86	13	53	74	7	2	15	1.15
193026--193072	8	5.6	8	80	14	51	8	19	0	72	1.10
202583--202639	28	2.0	28	93	0	96	50	15	7	26	1.69
221170--221266	24	4.0	24	85	5	142	28	22	20	27	1.99
221170--221266	48	2.0	48	91	0	158	28	22	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221416--221448	9	3.7	9	91	0	57	33	21	9	36	1.85
225582--225622	21	2.1	18	86	13	55	0	19	0	80	0.71
225582--225627	13	3.2	13	82	17	56	2	17	0	80	0.81
226377--226417	21	2.0	21	85	9	57	4	26	9	58	1.50
226721--226760	16	2.4	16	87	4	53	0	45	2	52	1.14
234086--234117	16	2.0	16	93	0	55	25	15	9	50	1.74
237926--237995	35	2.0	35	100	0	140	42	17	17	22	1.88
241575--241613	21	1.9	21	89	5	62	66	7	12	12	1.43
246895--246921	14	1.9	14	100	0	54	44	7	18	29	1.77
250652--250688	19	1.9	19	88	0	56	29	24	16	29	1.96
265607--265720	43	2.7	42	72	9	99	69	3	1	25	1.14
265605--265668	29	2.2	29	76	15	71	68	3	3	25	1.18
265686--265739	15	3.5	15	80	12	56	70	3	1	24	1.13
265700--265738	16	2.4	16	82	0	51	74	2	2	20	1.06
265795--265821	8	3.4	8	100	0	54	77	0	0	22	0.76
266037--266093	31	1.9	30	82	13	73	33	1	1	63	1.15
269088--269260	86	2.0	86	100	0	346	33	16	13	36	1.88
278921--278946	12	2.2	12	100	0	52	23	7	0	69	1.14
286411--286447	15	2.5	15	86	0	56	48	10	35	5	1.61
286877--286921	17	2.6	17	82	6	56	17	11	11	60	1.59
291388--291443	21	2.7	21	75	8	60	28	26	10	33	1.90
294926--295342	60	7.1	58	80	9	395	38	4	26	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294864--295301	60	7.5	58	77	9	342	38	4	26	30	1.77
295039--295128	31	2.9	31	69	14	78	41	3	23	32	1.71
294864--295283	28	14.4	29	67	18	151	38	5	26	30	1.77
294864--295342	57	8.2	58	77	10	392	38	4	25	30	1.77
294901--295285	29	13.3	27	68	15	130	38	4	25	30	1.77
294930--295388	28	15.8	29	66	20	162	38	4	25	31	1.76
295310--295412	29	3.6	30	74	11	90	38	3	22	34	1.72
296525--296609	3	27.7	3	71	4	62	36	4	1	57	1.27
296544--296635	47	2.0	47	86	4	132	31	6	3	58	1.39
296548--296652	47	2.2	47	81	6	115	32	7	4	55	1.49
297311--297410	17	5.9	17	70	5	78	53	6	4	37	1.45
306971--307558	99	5.9	99	82	1	662	32	15	32	19	1.93
306963--307497	49	10.8	50	70	10	346	33	15	32	19	1.93
306971--307527	297	1.9	297	84	0	747	33	15	31	19	1.93
306891--307527	198	3.2	198	84	4	797	32	15	32	19	1.93
318414--318539	62	2.0	62	95	0	225	42	20	11	25	1.85
321187--321211	2	12.5	2	100	0	50	52	0	0	48	1.00
322454--322485	5	6.4	5	100	0	64	0	0	40	59	0.97
325682--325761	34	2.4	34	84	0	97	22	10	31	36	1.87
328176--328252	32	2.4	33	77	4	84	62	6	5	25	1.41
333230--333306	32	2.4	33	77	4	84	62	6	5	25	1.41
336233--336270	7	4.9	8	84	15	53	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336235--336267	15	2.2	15	89	10	50	60	0	0	39	0.97
336231--336273	8	5.7	7	84	10	50	55	0	0	44	0.99

Tables:   1

The End!