Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011688.1 Kokia drynarioides strain JFW-HI SEQ_126681, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 152521
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Warning! 147 characters in sequence are not A, C, G, or T
Found at i:7059 original size:52 final size:52
Alignment explanation
Indices: 6994--7232 Score: 320
Period size: 52 Copynumber: 4.6 Consensus size: 52
6984 TTCCCATTTA
* *
6994 ATACTCACGATGACACAAAGTCATCGGACCTTA-AATCCGTAAAAGGA-TCTAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGT-AAAGGATTC-AT
* ** * *
7046 ATGCTCACGATGACACATAACCGTCGGACCTCATAATCCATAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
7098 ATACTCACGATGACACATAGCCATCGGACCTCATAATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* *
7150 ATACTCACGATGACACATAGTCATCGAACCTCATAATCCGTAAAGGAATCAT
1 ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
* * *
7202 ATACTCATGATGGCACATAGTTATCGGACCT
1 ATACTCACGATGACACATAGTCATCGGACCT
7233 TTTTCATTTA
Statistics
Matches: 165, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
52 157 0.95
53 8 0.05
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (52 bp):
ATACTCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCAT
Found at i:10927 original size:25 final size:25
Alignment explanation
Indices: 10895--10946 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
10885 TAAGACATAC
* *
10895 AAAACTCATCGTTTCATTTAAGCCT
1 AAAACTCACCATTTCATTTAAGCCT
* *
10920 AAAACTCACCATTTTATTTAAGTCT
1 AAAACTCACCATTTCATTTAAGCCT
10945 AA
1 AA
10947 GACAAAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.37
Consensus pattern (25 bp):
AAAACTCACCATTTCATTTAAGCCT
Found at i:12537 original size:37 final size:36
Alignment explanation
Indices: 12441--12538 Score: 92
Period size: 37 Copynumber: 2.6 Consensus size: 36
12431 AGTTTATGTT
*
12441 TTTATAAATTTTAAATAATTAAATTAATTTTTTATTT
1 TTTA-AAATTTTAAATAATTAAATTAATTTTTTATTA
** * *
12478 TTTAAAAAAGATTAAA-ATTTAAATTTA-TTTTTATTGA
1 TTT--AAAATTTTAAATAATTAAATTAATTTTTTATT-A
12515 TTTAAAATTTTAAATAACTTAAAT
1 TTTAAAATTTTAAATAA-TTAAAT
12539 AAAAAATTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
35 9 0.19
36 9 0.19
37 21 0.44
38 8 0.17
39 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (36 bp):
TTTAAAATTTTAAATAATTAAATTAATTTTTTATTA
Found at i:13011 original size:21 final size:22
Alignment explanation
Indices: 12986--13038 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
12976 ACAAGCTTAT
12986 AAATAAAATTATA-TAAAAATA
1 AAATAAAATTATAGTAAAAATA
* * *
13007 AAATATAATTTTAGTTAAAATA
1 AAATAAAATTATAGTAAAAATA
*
13029 ATA-AAAATTA
1 AAATAAAATTA
13039 CGATATTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATAAAATTATAGTAAAAATA
Found at i:21167 original size:31 final size:31
Alignment explanation
Indices: 21132--21193 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
21122 TCTTGCTGAT
21132 CTGTTGACTTTTTGCCAAATTATTTGTTTAC
1 CTGTTGACTTTTTGCCAAATTATTTGTTTAC
21163 CTGTTGACTTTTTGCCAAATTATTTGTTTAC
1 CTGTTGACTTTTTGCCAAATTATTTGTTTAC
21194 TTATTACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (31 bp):
CTGTTGACTTTTTGCCAAATTATTTGTTTAC
Found at i:29122 original size:18 final size:18
Alignment explanation
Indices: 29101--29135 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
29091 TTTTGAATTT
29101 ATTTTTAAATTATTTATA
1 ATTTTTAAATTATTTATA
*
29119 ATTTTTAAATTTTTTAT
1 ATTTTTAAATTATTTAT
29136 TGACGTGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTTTTAAATTATTTATA
Found at i:48996 original size:18 final size:18
Alignment explanation
Indices: 48973--49016 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
48963 CCAAAAGTAA
48973 ACGCTGCACGTCTTAAAC
1 ACGCTGCACGTCTTAAAC
48991 ACGCTGCACGTCTTAAAC
1 ACGCTGCACGTCTTAAAC
49009 ACGCTGCA
1 ACGCTGCA
49017 AGTGGCTGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.20
Consensus pattern (18 bp):
ACGCTGCACGTCTTAAAC
Found at i:49179 original size:7 final size:7
Alignment explanation
Indices: 49167--49202 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
49157 TACCAAATCT
49167 CCCTCCA
1 CCCTCCA
49174 CCCTCCA
1 CCCTCCA
49181 CCCTCCA
1 CCCTCCA
49188 CCCTCCA
1 CCCTCCA
49195 CCCTCCA
1 CCCTCCA
49202 C
1 C
49203 TCACTACTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.72, G:0.00, T:0.14
Consensus pattern (7 bp):
CCCTCCA
Found at i:52112 original size:19 final size:19
Alignment explanation
Indices: 52088--52145 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
52078 GACCAGACCT
52088 GTTGATTGACTCGTTGATC
1 GTTGATTGACTCGTTGATC
* *
52107 GTTGATCGACACGTTGA-C
1 GTTGATTGACTCGTTGATC
52125 --T--TTGACT-GTTGATC
1 GTTGATTGACTCGTTGATC
52139 GTTGATT
1 GTTGATT
52146 TTGACTTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 11
0.67 0.09 0.24
Matches are distributed among these distances:
13 5 0.17
14 5 0.17
16 2 0.07
18 3 0.10
19 15 0.50
ACGTcount: A:0.17, C:0.16, G:0.26, T:0.41
Consensus pattern (19 bp):
GTTGATTGACTCGTTGATC
Found at i:52143 original size:20 final size:19
Alignment explanation
Indices: 52118--52166 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
52108 TTGATCGACA
52118 CGTTGACTTTGACTGTTGAT
1 CGTTGACTTTGACT-TTGAT
*
52138 CGTTGATTTTGACTTTGAT
1 CGTTGACTTTGACTTTGAT
*
52157 TGTTGACTTT
1 CGTTGACTTT
52167 TTTTGACTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.14, C:0.12, G:0.22, T:0.51
Consensus pattern (19 bp):
CGTTGACTTTGACTTTGAT
Found at i:52163 original size:13 final size:13
Alignment explanation
Indices: 52119--52166 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
52109 TGATCGACAC
*
52119 GTTGACTTTGACT
1 GTTGACTTTGATT
*
52132 GTTGATCGTTGATT
1 GTTGA-CTTTGATT
52146 -TTGACTTTGATT
1 GTTGACTTTGATT
52158 GTTGACTTT
1 GTTGACTTT
52167 TTTTGACTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 7 0.23
13 17 0.57
14 6 0.20
ACGTcount: A:0.15, C:0.10, G:0.23, T:0.52
Consensus pattern (13 bp):
GTTGACTTTGATT
Found at i:52167 original size:20 final size:21
Alignment explanation
Indices: 52118--52167 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
52108 TTGATCGACA
52118 CGTTGAC-TTTGACTGTTGAT
1 CGTTGACTTTTGACTGTTGAT
52138 CGTTGA-TTTTGACT-TTGAT
1 CGTTGACTTTTGACTGTTGAT
*
52157 TGTTGACTTTT
1 CGTTGACTTTT
52168 TTTGACTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.14, C:0.12, G:0.22, T:0.52
Consensus pattern (21 bp):
CGTTGACTTTTGACTGTTGAT
Found at i:53323 original size:10 final size:10
Alignment explanation
Indices: 53308--53332 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
53298 TTAAGTTTAG
53308 AATTATTCAA
1 AATTATTCAA
53318 AATTATTCAA
1 AATTATTCAA
53328 AATTA
1 AATTA
53333 ATTATTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
AATTATTCAA
Found at i:58438 original size:2 final size:2
Alignment explanation
Indices: 58425--58457 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
58415 ATTAAGAAGT
*
58425 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
58458 TTTTTTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:59096 original size:147 final size:146
Alignment explanation
Indices: 58865--59160 Score: 339
Period size: 147 Copynumber: 2.0 Consensus size: 146
58855 AGTTTTGATC
* * * * * * *
58865 CTTCTATTATGTTCAAACTTAAAATTTAATCTCTGTTCGTCTTTTTTTATTTTTATAATGTCATT
1 CTTCTATTATGTTCAAACTTAAAACTTAATCTCTATTCGTATTATTTTACTTTCATAATGTCATC
* *
58930 AATTAATCCAAATATTTAATATTATAATCTATTTCGATT-AAA-ATGACTTAGATTTTTGTTCTT
66 AATTAATCCAAATAGTTAATATTATAATCTATTTCGATTCAAAGATGAATTAGATTTTT-TTCTT
*
58993 AAAAAAATTTATTTTTAA
130 AAAAAAA-CTATTTTTAA
* * *
59011 CTTCTATTATGTTTAAATTTAAAACTTAATCTCTATT-TTAATATATTTTACTTTCATAATGTCA
1 CTTCTATTATGTTCAAACTTAAAACTTAATCTCTATTCGT-AT-TATTTTACTTTCATAATGTCA
* * * * *
59075 TCAATT-AGCTCAAATAGTTAATATTTTCATCTATTTTGATTCAAATGATGAATTATATTTTTTT
64 TCAATTAATC-CAAATAGTTAATATTATAATCTATTTCGATTCAAA-GATGAATTAGATTTTTTT
*
59139 CTTAAAAATACTATTTTTAA
127 CTTAAAAAAACTATTTTTAA
59159 CT
1 CT
59161 CATCATGCTA
Statistics
Matches: 125, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
145 1 0.01
146 36 0.29
147 50 0.40
148 14 0.11
149 11 0.09
150 13 0.10
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (146 bp):
CTTCTATTATGTTCAAACTTAAAACTTAATCTCTATTCGTATTATTTTACTTTCATAATGTCATC
AATTAATCCAAATAGTTAATATTATAATCTATTTCGATTCAAAGATGAATTAGATTTTTTTCTTA
AAAAAACTATTTTTAA
Found at i:59614 original size:56 final size:56
Alignment explanation
Indices: 59546--59656 Score: 159
Period size: 56 Copynumber: 2.0 Consensus size: 56
59536 TTTTCAAACA
* *
59546 ATTCAATTTGTCCACAACAGAAAACAAAAAATCTGAAAAAGAAGATGCAAGGCCAC
1 ATTCAATCTGTCCACAACAAAAAACAAAAAATCTGAAAAAGAAGATGCAAGGCCAC
* * * * *
59602 ATTCAATCTGTCCACAACAAAAAACAGAAAATTTGCATATGAAGATGCAAGGCCA
1 ATTCAATCTGTCCACAACAAAAAACAAAAAATCTGAAAAAGAAGATGCAAGGCCA
59657 TCGATACAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (56 bp):
ATTCAATCTGTCCACAACAAAAAACAAAAAATCTGAAAAAGAAGATGCAAGGCCAC
Found at i:60201 original size:13 final size:14
Alignment explanation
Indices: 60179--60221 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 14
60169 AAAAAATCAT
*
60179 GGAAAGTGAAGGAA
1 GGAAAATGAAGGAA
60193 -GAAAATGAAGGAA
1 GGAAAATGAAGGAA
60206 CGGGAAAATGAAGGAA
1 --GGAAAATGAAGGAA
60222 AAGGAGAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 12 0.48
16 13 0.52
ACGTcount: A:0.53, C:0.02, G:0.37, T:0.07
Consensus pattern (14 bp):
GGAAAATGAAGGAA
Found at i:60305 original size:21 final size:21
Alignment explanation
Indices: 60281--60325 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
60271 TGGCTGCATC
60281 AGCTAGTTAACTTCCCACATA
1 AGCTAGTTAACTTCCCACATA
*
60302 AGCTAGTTAACTTGCCACATA
1 AGCTAGTTAACTTCCCACATA
60323 AGC
1 AGC
60326 AATCCCGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (21 bp):
AGCTAGTTAACTTCCCACATA
Found at i:60771 original size:34 final size:34
Alignment explanation
Indices: 60726--60807 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
60716 TTTAAGAGAA
*
60726 AAAAAAGTATATTAATGTGTTAACTATTTGGATT
1 AAAAAATTATATTAATGTGTTAACTATTTGGATT
* * *
60760 AAATAATTATATTAATGTGTTAATTATTTTGATT
1 AAAAAATTATATTAATGTGTTAACTATTTGGATT
*
60794 AAAAAATAATATTA
1 AAAAAATTATATTA
60808 TAAAATAGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.45, C:0.01, G:0.10, T:0.44
Consensus pattern (34 bp):
AAAAAATTATATTAATGTGTTAACTATTTGGATT
Found at i:61062 original size:18 final size:18
Alignment explanation
Indices: 61034--61070 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
61024 ATTTTGAATT
61034 TTTTTTAATTTATATCTAA
1 TTTTTTAATTTATAT-TAA
61053 TTTTTT-ATTTATATTAA
1 TTTTTTAATTTATATTAA
61070 T
1 T
61071 CTCAGAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 8 0.44
19 6 0.33
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTTAATTTATATTAA
Found at i:63694 original size:29 final size:29
Alignment explanation
Indices: 63652--63708 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
63642 GTGGAAAAAG
*
63652 TTACATCATTGGGTACAACACCTAACTTT
1 TTACAACATTGGGTACAACACCTAACTTT
63681 TTACAACATTGGGTACAACACCTAACTT
1 TTACAACATTGGGTACAACACCTAACTT
63709 GAGCATTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.32
Consensus pattern (29 bp):
TTACAACATTGGGTACAACACCTAACTTT
Found at i:65478 original size:26 final size:26
Alignment explanation
Indices: 65414--65478 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 26
65404 AACCCAAACT
* * *
65414 TTTAAATTATATTAATATTTATTTATA
1 TTTAAA-TAAATTAATATTTAGTTACA
* *
65441 -ATAATTACAATTAATATTTAGTTACA
1 TTTAAATA-AATTAATATTTAGTTACA
65467 TTTAAATAAATT
1 TTTAAATAAATT
65479 TATTAGTATT
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
25 2 0.07
26 22 0.76
27 5 0.17
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.51
Consensus pattern (26 bp):
TTTAAATAAATTAATATTTAGTTACA
Found at i:66714 original size:6 final size:6
Alignment explanation
Indices: 66703--66730 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
66693 GATAAATGCA
66703 TGTTGG TGTTGG TGTTGG TGTTGG TGTT
1 TGTTGG TGTTGG TGTTGG TGTTGG TGTT
66731 AAGATATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54
Consensus pattern (6 bp):
TGTTGG
Found at i:68405 original size:29 final size:29
Alignment explanation
Indices: 68372--68440 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
68362 AGGTTTTTTT
68372 TTATAAAAATAATACTAAAAAATA-ATT-A
1 TTATAAAAATAATA-TAAAAAATAGATTCA
* * *
68400 TATATAAAAATGATATGAGAAATAGATTCA
1 T-TATAAAAATAATATAAAAAATAGATTCA
68430 TTATAAAAATA
1 TTATAAAAATA
68441 GGATTTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
28 8 0.24
29 24 0.71
30 2 0.06
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (29 bp):
TTATAAAAATAATATAAAAAATAGATTCA
Found at i:76435 original size:1 final size:1
Alignment explanation
Indices: 76429--76459 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
76419 NNNNNNNNNN
76429 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
76460 CATATAAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:81310 original size:2 final size:2
Alignment explanation
Indices: 81305--81344 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
81295 TAAAAAAAAA
81305 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81345 TTTTTTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:88130 original size:19 final size:19
Alignment explanation
Indices: 88095--88134 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
88085 GTTATGCGCT
*
88095 AGGATGCACCTTGTGTGCC
1 AGGATGCACCTTATGTGCC
88114 AGGATGCA-CTTCATGTGCC
1 AGGATGCACCTT-ATGTGCC
88133 AG
1 AG
88135 TAATGCGCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (19 bp):
AGGATGCACCTTATGTGCC
Found at i:89607 original size:3 final size:3
Alignment explanation
Indices: 89599--89629 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
89589 TTTCCCTCAA
89599 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
89630 GCAAAACTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:90945 original size:22 final size:23
Alignment explanation
Indices: 90920--90962 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
90910 AATTTAAGGG
* *
90920 ACTA-AATTAAAATTTAATTTTT
1 ACTATAATAAAAATGTAATTTTT
90942 ACTATAATAAAAATGTAATTT
1 ACTATAATAAAAATGTAATTT
90963 CATCATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (23 bp):
ACTATAATAAAAATGTAATTTTT
Found at i:93288 original size:33 final size:34
Alignment explanation
Indices: 93233--93301 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 34
93223 ATTTGTTAAA
*
93233 TTTTTAAAGTTTTAGAAAGTTAACATTG-TTGATT
1 TTTTTAAAGTTTTAGAAAGTTAA-ATTGATAGATT
* **
93267 TTTTTGAAGTTTTAG-GTGTTAAATTGATAGATT
1 TTTTTAAAGTTTTAGAAAGTTAAATTGATAGATT
93300 TT
1 TT
93302 AAGCTTAGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
32 4 0.13
33 12 0.40
34 14 0.47
ACGTcount: A:0.29, C:0.01, G:0.17, T:0.52
Consensus pattern (34 bp):
TTTTTAAAGTTTTAGAAAGTTAAATTGATAGATT
Found at i:95547 original size:97 final size:95
Alignment explanation
Indices: 95374--95565 Score: 246
Period size: 97 Copynumber: 2.0 Consensus size: 95
95364 AACTTTGGAA
* * * * *
95374 AAGGATATTCGATTATCTCGTTTTGAAGAAGTCGCACCTAGTAAGTTTAGGTACAAATTTTCAGA
1 AAGGATATTCGATTATCTCGATTTGAAGAAGTCGCACCTAGTAAGTTAAGGCACAAAATTTCAAA
95439 ATCAAAGAT-AAAGAAACATTGCCTCGATTT
66 ATCAAAGATAAAAG-AACATTGCCTCGATTT
**
95469 AAGGATATTCGATTAT-TCCGATTTGAAGAAAAGTCGTGCCTAGTAAGTTAAGGCACAAAATTTC
1 AAGGATATTCGATTATCT-CGATTTGAAG--AAGTCGCACCTAGTAAGTTAAGGCACAAAATTTC
*
95533 AAAACTCAAA-ATAAAAGAATATTGCCTCGATTT
63 AAAA-TCAAAGATAAAAGAACATTGCCTCGATTT
95566 TAAAGTTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
94 1 0.01
95 25 0.30
97 49 0.58
98 9 0.11
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (95 bp):
AAGGATATTCGATTATCTCGATTTGAAGAAGTCGCACCTAGTAAGTTAAGGCACAAAATTTCAAA
ATCAAAGATAAAAGAACATTGCCTCGATTT
Found at i:95828 original size:29 final size:28
Alignment explanation
Indices: 95796--96077 Score: 122
Period size: 28 Copynumber: 9.8 Consensus size: 28
95786 GGATACTCGA
95796 GGGT-AAAATGGTAATTTTGGGAAAGTTCG
1 GGGTAAAAATGGTAATTTT-GG-AAGTTCG
* *
95825 GGGTTAAAAATGG-AATTTTAGGCA-TCCAG
1 GGG-TAAAAATGGTAATTTT-GGAAGTTC-G
* ** *
95854 TGGT-AAAATGGTAATTTTTGGATAAATCA
1 GGGTAAAAATGGTAA-TTTTGGA-AGTTCG
* *
95883 AGGTCAAAAATGG-AATTTTTGGTAGTTCG
1 GGGT-AAAAATGGTAA-TTTTGGAAGTTCG
* **
95912 AGGGT-AAAATGGTAATTTTTGAAAAATCG
1 -GGGTAAAAATGGTAA-TTTTGGAAGTTCG
* *
95941 AGGTAAAAAATGG-AATTTTGGAAGTTTAG
1 GGGT-AAAAATGGTAATTTTGGAAG-TTCG
*
95970 GGGT-AAAATGGTAATTTTTGGAAAAAG-T-A
1 GGGTAAAAATGGTAA-TTTTGG---AAGTTCG
**
95999 GGGTCAAAAATGG-AATTTTTGGAAGTTTAA
1 GGGT-AAAAATGGTAA-TTTTGGAAG-TTCG
96029 GGGT-AAAATGGTAATTTTGGAAGTTCG
1 GGGTAAAAATGGTAATTTTGGAAGTTCG
* *
96056 AGGGTCAAAAT-ATAATTTTGGA
1 -GGGTAAAAATGGTAATTTTGGA
96078 GAAGTTTGAG
Statistics
Matches: 198, Mismatches: 28, Indels: 55
0.70 0.10 0.20
Matches are distributed among these distances:
27 19 0.10
28 56 0.28
29 55 0.28
30 44 0.22
31 21 0.11
32 3 0.02
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.32
Consensus pattern (28 bp):
GGGTAAAAATGGTAATTTTGGAAGTTCG
Found at i:95865 original size:58 final size:57
Alignment explanation
Indices: 95772--96065 Score: 249
Period size: 58 Copynumber: 5.1 Consensus size: 57
95762 TCGAGGTTTG
* * * *
95772 AAAATGTG-ATTTTTGGATACTCGAGGGTAAAATGGTAATTTTGGGAAAGTTCGGGGTTA
1 AAAATG-GAATTTTTGGA-AGTCAAGGGTAAAATGGTAATTTT-GGAAAGATCGGGGTCA
* * * **
95831 AAAATGGAATTTTAGGCA-TCCAGTGGTAAAATGGTAATTTTTGGATAA-ATCAAGGTCA
1 AAAATGGAATTTTTGGAAGTCAAG-GGTAAAATGGTAA-TTTTGGA-AAGATCGGGGTCA
* * * * * *
95889 AAAATGGAATTTTTGGTAGTTCGAGGGTAAAATGGTAATTTTTGAAAAATCGAGGTAA
1 AAAATGGAATTTTTGGAAG-TCAAGGGTAAAATGGTAATTTTGGAAAGATCGGGGTCA
* * * *
95947 AAAATGGAA-TTTTGGAAGTTTAGGGGTAAAATGGTAATTTTTGGAAAAAGT-AGGGTCA
1 AAAATGGAATTTTTGGAAG-TCAAGGGTAAAATGGTAA-TTTTGGAAAGA-TCGGGGTCA
* *
96005 AAAATGGAATTTTTGGAAGTTTAAGGGTAAAATGGTAATTTTGG-AAGTTCGAGGGTCA
1 AAAATGGAATTTTTGGAAG-TCAAGGGTAAAATGGTAATTTTGGAAAGATCG-GGGTCA
96063 AAA
1 AAA
96066 TATAATTTTG
Statistics
Matches: 198, Mismatches: 25, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
56 1 0.01
57 32 0.16
58 101 0.51
59 60 0.30
60 4 0.02
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.32
Consensus pattern (57 bp):
AAAATGGAATTTTTGGAAGTCAAGGGTAAAATGGTAATTTTGGAAAGATCGGGGTCA
Found at i:96004 original size:116 final size:117
Alignment explanation
Indices: 95792--96048 Score: 349
Period size: 116 Copynumber: 2.2 Consensus size: 117
95782 TTTTGGATAC
** * * * *
95792 TCGAGGGTAAAATGGTAATTTTGGGAAAGTTCGGGGTTAAAAATGGAATTTTAGGCATCCAGTGG
1 TCGAGGGTAAAATGGTAATTTTGGGAAAAATCGAGGTAAAAAATGGAATTTTAGGAATCCAGGGG
* *
95857 TAAAATGGTAATTTTTGGATAAATCAAGGTCAAAAATGGAATTTTTGGTAGT
66 TAAAATGGTAATTTTTGGAAAAATCAAGGTCAAAAATGGAATTTTTGGAAGT
* **
95909 TCGAGGGTAAAATGGTAATTTT-TGAAAAATCGAGGTAAAAAATGGAATTTT-GGAAGTTTAGGG
1 TCGAGGGTAAAATGGTAATTTTGGGAAAAATCGAGGTAAAAAATGGAATTTTAGGAA-TCCAGGG
*
95972 GTAAAATGGTAATTTTTGGAAAAAGT-AGGGTCAAAAATGGAATTTTTGGAAGT
65 GTAAAATGGTAATTTTTGGAAAAA-TCAAGGTCAAAAATGGAATTTTTGGAAGT
**
96025 TTAAGGGTAAAATGGTAATTTTGG
1 TCGAGGGTAAAATGGTAATTTTGG
96049 AAGTTCGAGG
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
115 3 0.02
116 96 0.79
117 23 0.19
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (117 bp):
TCGAGGGTAAAATGGTAATTTTGGGAAAAATCGAGGTAAAAAATGGAATTTTAGGAATCCAGGGG
TAAAATGGTAATTTTTGGAAAAATCAAGGTCAAAAATGGAATTTTTGGAAGT
Found at i:96033 original size:59 final size:59
Alignment explanation
Indices: 95795--96050 Score: 292
Period size: 58 Copynumber: 4.4 Consensus size: 59
95785 TGGATACTCG
* ** * * * * *
95795 AGGGTAAAATGGTAATTTTGGGAAAGTTCGGGGTTAAAAATGGAATTTTAGGCA--TCC
1 AGGGTAAAATGGTAATTTTTGGAAAAATCAGGGTCAAAAATGGAATTTTTGGAAGTTCA
* * * *
95852 AGTGGTAAAATGGTAATTTTTGGATAAATCAAGGTCAAAAATGGAATTTTTGGTAGTTCG
1 AG-GGTAAAATGGTAATTTTTGGAAAAATCAGGGTCAAAAATGGAATTTTTGGAAGTTCA
* *
95912 AGGGTAAAATGGTAATTTTT-GAAAAATC-GAGGTAAAAAATGGAA-TTTTGGAAGTTTA
1 AGGGTAAAATGGTAATTTTTGGAAAAATCAG-GGTCAAAAATGGAATTTTTGGAAGTTCA
* *
95969 GGGGTAAAATGGTAATTTTTGGAAAAAGT-AGGGTCAAAAATGGAATTTTTGGAAGTTTA
1 AGGGTAAAATGGTAATTTTTGGAAAAA-TCAGGGTCAAAAATGGAATTTTTGGAAGTTCA
96028 AGGGTAAAATGGTAA-TTTTGGAA
1 AGGGTAAAATGGTAATTTTTGGAA
96051 GTTCGAGGGT
Statistics
Matches: 172, Mismatches: 19, Indels: 15
0.83 0.09 0.07
Matches are distributed among these distances:
57 31 0.18
58 90 0.52
59 47 0.27
60 4 0.02
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.32
Consensus pattern (59 bp):
AGGGTAAAATGGTAATTTTTGGAAAAATCAGGGTCAAAAATGGAATTTTTGGAAGTTCA
Found at i:96102 original size:58 final size:59
Alignment explanation
Indices: 95795--96113 Score: 164
Period size: 58 Copynumber: 5.5 Consensus size: 59
95785 TGGATACTCG
* * * * * **
95795 AGGGTAAAATGGTAATTT-TGGGAAAGTTCG-GGGTTAAAAATGGAATTTTAGGCA--TCC
1 AGGGTAAAATGATAATTTCT-GGATAGTTCGAGGGTCAAAAAT-GAATTTTGGGAAGTTTA
* * ** * * * **
95852 AGTGGTAAAATGGTAATTTTTGGATAAATC-AAGGTCAAAAATGGAATTTTTGGTAGTTCG
1 AG-GGTAAAATGATAATTTCTGGATAGTTCGAGGGTCAAAAAT-GAATTTTGGGAAGTTTA
* * * ** *
95912 AGGGTAAAATGGTAATTT-TTGAAAAATCGA-GGTAAAAAATGGAATTTT-GGAAGTTTA
1 AGGGTAAAATGATAATTTCTGGATAGTTCGAGGGTCAAAAAT-GAATTTTGGGAAGTTTA
* * * * *
95969 GGGGTAAAATGGTAATTTTTGGAAAAAG-T--AGGGTCAAAAATGGAATTTTTGGAAGTTTA
1 AGGGTAAAATGATAATTTCTGG--ATAGTTCGAGGGTCAAAAAT-GAATTTTGGGAAGTTTA
* *
96028 AGGGTAAAATGGTAATTT-TGGA-AGTTCGAGGGTCAAAATAT-AATTTTGGAGAAGTTTG
1 AGGGTAAAATGATAATTTCTGGATAGTTCGAGGGTCAAAA-ATGAATTTTGG-GAAGTTTA
*
96086 AGTGTTAAAAT-ATAATTTCTGGATAGTT
1 AG-GGTAAAATGATAATTTCTGGATAGTT
96114 TAAGGACCTT
Statistics
Matches: 220, Mismatches: 23, Indels: 35
0.79 0.08 0.13
Matches are distributed among these distances:
55 2 0.01
56 2 0.01
57 33 0.15
58 114 0.52
59 58 0.26
60 11 0.05
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.33
Consensus pattern (59 bp):
AGGGTAAAATGATAATTTCTGGATAGTTCGAGGGTCAAAAATGAATTTTGGGAAGTTTA
Found at i:96114 original size:30 final size:28
Alignment explanation
Indices: 95998--96114 Score: 103
Period size: 30 Copynumber: 4.0 Consensus size: 28
95988 TGGAAAAAGT
*
95998 AGGGTCAAAA-ATGGAATTTTTGGAAGTTTA
1 AGGGTCAAAATAT--AA-TTTTGGAAGTTTG
* *
96028 AGGGT-AAAATGGTAATTTTGGAAGTTCG
1 AGGGTCAAAAT-ATAATTTTGGAAGTTTG
96056 AGGGTCAAAATATAATTTTGGAGAAGTTTG
1 AGGGTCAAAATATAATTTT-G-GAAGTTTG
* *
96086 AGTGTTAAAATATAATTTCTGGATAGTTT
1 AGGGTCAAAATATAATTT-TGGA-AGTTT
96115 AAGGACCTTC
Statistics
Matches: 73, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
28 23 0.32
29 14 0.19
30 34 0.47
31 2 0.03
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (28 bp):
AGGGTCAAAATATAATTTTGGAAGTTTG
Found at i:97167 original size:3 final size:3
Alignment explanation
Indices: 97159--97217 Score: 66
Period size: 3 Copynumber: 20.0 Consensus size: 3
97149 TAAATAAATG
* * * *
97159 TTA TTA TTA TTA TTA TAA TTA TAA TTA TTA TTA TTA TTA TTG TTA -TG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
97206 TTA TTA ATA TTA
1 TTA TTA TTA TTA
97218 ATCAATGTCA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
2 1 0.02
3 44 0.98
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:97999 original size:17 final size:17
Alignment explanation
Indices: 97979--98023 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
97969 AAATAAATTT
97979 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
97996 TAAACTTT-AATTTAAAA
1 TAAA-TTTAAATTTAAAA
*
98013 TAAATCTAAAT
1 TAAATTTAAAT
98024 CCTGTTGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 2 0.08
17 20 0.80
18 3 0.12
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:98013 original size:24 final size:23
Alignment explanation
Indices: 97965--98011 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
97955 ATTGGACATT
*
97965 ATTTAAATAAATTTTAAATTTAA
1 ATTTAAATAAACTTTAAATTTAA
97988 ATTTAAAATAAACTTT-AATTTAA
1 ATTT-AAATAAACTTTAAATTTAA
98011 A
1 A
98012 ATAAATCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTTAAATAAACTTTAAATTTAA
Found at i:104175 original size:18 final size:18
Alignment explanation
Indices: 104152--104187 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
104142 GACACCTATG
*
104152 TATTTTTTTTAAATACGA
1 TATTTTATTTAAATACGA
*
104170 TATTTTATTTATATACGA
1 TATTTTATTTAAATACGA
104188 AAATACGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (18 bp):
TATTTTATTTAAATACGA
Found at i:108057 original size:17 final size:18
Alignment explanation
Indices: 108030--108064 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
108020 AAAAACTTTA
*
108030 TTTAATATTTTTATAAAT
1 TTTAATATTTTTAAAAAT
108048 TTTAAT-TTTTTAAAAAT
1 TTTAATATTTTTAAAAAT
108065 ATATTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTAATATTTTTAAAAAT
Found at i:116111 original size:3 final size:3
Alignment explanation
Indices: 116103--116136 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
116093 TCACAAAGAG
*
116103 TTC TTC TTC TTC TTC TTC ATC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
116137 AAGTGTTAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:123352 original size:29 final size:29
Alignment explanation
Indices: 123320--123417 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
123310 AAAAAATACG
* *
123320 ATTTTTGGATACCCAAGGGTAAAATTGTA
1 ATTTTTGGATACTCAAGGGTAAAATGGTA
* * *
123349 ATTTTTGGACACTCGAGGATGAAAATGGTA
1 ATTTTTGGATACTCAAGGGT-AAAATGGTA
* ** *
123379 ATTTTTTGATGTTCAAGGGTAAAACGGTA
1 ATTTTTGGATACTCAAGGGTAAAATGGTA
123408 A-TTTTGGATA
1 ATTTTTGGATA
123418 ATGCGGGGTA
Statistics
Matches: 54, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
28 7 0.13
29 25 0.46
30 22 0.41
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (29 bp):
ATTTTTGGATACTCAAGGGTAAAATGGTA
Found at i:123573 original size:27 final size:27
Alignment explanation
Indices: 123511--123589 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 27
123501 GACATCCGAA
123511 GGTAAAATGGTAATGTTTGGATAATTCGG
1 GGTAAAATGGTAAT-TTTGGA-AATTCGG
*
123540 GGTTAAAATAG-AATTTTGGAAATTCAGG
1 GG-TAAAATGGTAATTTTGGAAATTC-GG
*
123568 GGTAAAATGGTATTTTTGGAAA
1 GGTAAAATGGTAATTTTGGAAA
123590 AGTTTAGTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 12 0.27
28 20 0.45
29 5 0.11
30 7 0.16
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (27 bp):
GGTAAAATGGTAATTTTGGAAATTCGG
Found at i:123729 original size:59 final size:57
Alignment explanation
Indices: 123511--123810 Score: 238
Period size: 59 Copynumber: 5.1 Consensus size: 57
123501 GACATCCGAA
* ** *
123511 GGTAAAATGGTAATGTTTGGATAA-TTCGGGGTTAAAATAG-AA-TTTTGGAAATTCAGG
1 GGTAAAAT-GTAATTTTTGGA-AAGTTTAGGGTTAAAAT-GTAATTTTTGGAAATTTAGG
* * * *
123568 GGTAAAATGGT-ATTTTTGGAAAAGTTTA--GTCAAAAATGAAATTTTTGGAAATTCAAG
1 GGTAAAAT-GTAATTTTTGG-AAAGTTTAGGGT-TAAAATGTAATTTTTGGAAATTTAGG
* * * *
123625 AGTAAAATGGTAATTTTTGGAAAGTTTGGGGTTAAAATTTGATTTTTGGAAAGTTTAGG
1 GGTAAAAT-GTAATTTTTGGAAAGTTTAGGGTTAAAATGTAATTTTTGGAAA-TTTAGG
*
123684 GGTATAAATGCAATTTTT-GAGAAGTTTAGGGTCT-AAATGTAATTTTTGGAAAGTTTGAGG
1 GGTA-AAATGTAATTTTTGGA-AAGTTTAGGGT-TAAAATGTAATTTTTGGAAA-TTT-AGG
* * * * * *
123744 GTTAAGATATAATTTTTGGAAAGTTTAGGGTTAAAATATATTTTTTGGAAAATTTAAG
1 GGTAAAATGTAATTTTTGGAAAGTTTAGGGTTAAAATGTAATTTTTGG-AAATTTAGG
123802 GGTCAAAAT
1 GGT-AAAAT
123811 AAGATTTTTT
Statistics
Matches: 199, Mismatches: 27, Indels: 32
0.77 0.10 0.12
Matches are distributed among these distances:
55 3 0.02
56 16 0.08
57 45 0.23
58 31 0.16
59 88 0.44
60 16 0.08
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (57 bp):
GGTAAAATGTAATTTTTGGAAAGTTTAGGGTTAAAATGTAATTTTTGGAAATTTAGG
Found at i:123799 original size:29 final size:29
Alignment explanation
Indices: 123539--123819 Score: 206
Period size: 29 Copynumber: 9.7 Consensus size: 29
123529 GGATAATTCG
* *
123539 GGGTTAAAATAGAA-TTTTGGAAA-TTCA
1 GGGTTAAAATATAATTTTTGGAAAGTTTA
* *
123566 GGGGTAAAATGGT-ATTTTTGGAAAAGTTTA
1 GGGTTAAAAT-ATAATTTTTGG-AAAGTTTA
* *
123596 --GTCAAAA-ATGAAATTTTTGGAAA-TTCAA
1 GGGTTAAAATAT--AATTTTTGGAAAGTT-TA
* * *
123624 GAG-TAAAATGGTAATTTTTGGAAAGTTTG
1 GGGTTAAAAT-ATAATTTTTGGAAAGTTTA
* *
123653 GGGTTAAAATTTGATTTTTGGAAAGTTTA
1 GGGTTAAAATATAATTTTTGGAAAGTTTA
* **
123682 GGGGTATAAATGCAATTTTT-GAGAAGTTTA
1 GGGTTA-AAATATAATTTTTGGA-AAGTTTA
*
123712 GGGTCT-AAATGTAATTTTTGGAAAGTTTGA
1 GGGT-TAAAATATAATTTTTGGAAAGTTT-A
*
123742 GGGTTAAGATATAATTTTTGGAAAGTTTA
1 GGGTTAAAATATAATTTTTGGAAAGTTTA
* *
123771 GGGTTAAAATATATTTTTTGGAAAATTTAA
1 GGGTTAAAATATAATTTTTGGAAAGTTT-A
*
123801 GGGTCAAAATA-AGATTTTT
1 GGGTTAAAATATA-ATTTTT
123820 TAGACATTGC
Statistics
Matches: 203, Mismatches: 29, Indels: 41
0.74 0.11 0.15
Matches are distributed among these distances:
26 1 0.00
27 12 0.06
28 15 0.07
29 98 0.48
30 75 0.37
31 2 0.01
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.38
Consensus pattern (29 bp):
GGGTTAAAATATAATTTTTGGAAAGTTTA
Found at i:125756 original size:58 final size:56
Alignment explanation
Indices: 125635--125964 Score: 284
Period size: 58 Copynumber: 5.6 Consensus size: 56
125625 ACATTCGAGA
* * * * * *
125635 GTAAAATAGTAATTTTTGGATGTTTCGGGGTTAAAAATATGATTTTTGGAAGTTCGAGG
1 GTAAAATGGTAATTTTTAGAAGTTT-GGGGTT-AAAAT-GGGTTTTTGGAAGTTCAAGG
*
125694 GTAAAATTGTAATTTTTAGAAGTTCTGGGGTTAAAATGTGGTTTTTGGAAGTTCAAGG
1 GTAAAATGGTAATTTTTAGAAGTT-TGGGGTTAAAATG-GGTTTTTGGAAGTTCAAGG
* * * *
125752 GTAAAATGGTGATTTTTAGAAGTTTTAGGGTTAAAAATGGGATTTTTGGAAGTTTAGGG
1 GTAAAATGGTAATTTTTAGAAG-TTTGGGGTT-AAAATGGG-TTTTTGGAAGTTCAAGG
* ** * * * **
125811 GTAAAATTGTAATTTTTAGAAGTTTCAGGTCAAAAATAAGATTTTTGGAAGTAT-GGGG
1 GTAAAATGGTAATTTTTAGAAGTTTGGGGT-TAAAAT-GGGTTTTTGGAAGT-TCAAGG
* * * *
125869 GTAAAATGGTAATTTTTAGAAGTTTCGGGATCAAAAAATGGGATTTTTGGGAGTTTAAGG
1 GTAAAATGGTAATTTTTAGAAGTTT-GGGGT--TAAAATGGG-TTTTTGGAAGTTCAAGG
* *
125929 GTAAAATGGTAATTTTTAAAAGTTTTGAGGTTAAAA
1 GTAAAATGGTAATTTTTAGAAG-TTTGGGGTTAAAA
125965 ATGAGATTTT
Statistics
Matches: 225, Mismatches: 33, Indels: 27
0.79 0.12 0.09
Matches are distributed among these distances:
58 103 0.46
59 76 0.34
60 43 0.19
61 3 0.01
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (56 bp):
GTAAAATGGTAATTTTTAGAAGTTTGGGGTTAAAATGGGTTTTTGGAAGTTCAAGG
Found at i:125757 original size:117 final size:115
Alignment explanation
Indices: 125635--125975 Score: 362
Period size: 117 Copynumber: 2.9 Consensus size: 115
125625 ACATTCGAGA
* * * *
125635 GTAAAATAGTAATTTTTGGATGTTTCGGGGTTAAAAATATGATTTTTGGAAGTTCGAGGGTAAAA
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATATGATTTTTGGAAGTT-AAGGGTAAAA
* ** *
125700 TTGTAATTTTTAGAAGTTCTGGGGTTAAAATGTGGTTTTTGGAAGT-TCAAGG
65 TTGTAATTTTTAGAAGTT-TGAGGTTAAAATAAGATTTTTGGAAGTAT-AAGG
* ** ** *
125752 GTAAAATGGTGATTTTTAGAAGTTTTAGGGTTAAAAATGGGATTTTTGGAAGTTTAGGGGTAAAA
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATATGATTTTTGGAAG-TTAAGGGTAAAA
* * **
125817 TTGTAATTTTTAGAAGTTTCAGGTCAAAAATAAGATTTTTGGAAGTATGGGG
65 TTGTAATTTTTAGAAGTTTGAGGT-TAAAATAAGATTTTTGGAAGTATAAGG
* * *
125869 GTAAAATGGTAATTTTTAGAAGTTTCGGGATCAAAAA-ATGGGATTTTTGGGAGTTTAAGGGTAA
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATAT--GATTTTTGGAAG-TTAAGGGTAA
* * *
125933 AATGGTAATTTTTAAAAGTTTTGAGGTTAAAAATGAGATTTTT
63 AATTGTAATTTTTAGAAG-TTTGAGGTT-AAAATAAGATTTTT
125976 AAAAGGTTCG
Statistics
Matches: 185, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
116 4 0.02
117 121 0.65
118 40 0.22
119 20 0.11
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.38
Consensus pattern (115 bp):
GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATATGATTTTTGGAAGTTAAGGGTAAAAT
TGTAATTTTTAGAAGTTTGAGGTTAAAATAAGATTTTTGGAAGTATAAGG
Found at i:125974 original size:30 final size:30
Alignment explanation
Indices: 125940--126064 Score: 105
Period size: 30 Copynumber: 4.2 Consensus size: 30
125930 TAAAATGGTA
* *
125940 ATTTTTAAAAGTTTTGAGGTT-AAAAATGAG
1 ATTTTTAAAAGGTTCG-GGTTCAAAAATGAG
*
125970 ATTTTTAAAAGGTTCGGGTTCAAAAATGTG
1 ATTTTTAAAAGGTTCGGGTTCAAAAATGAG
** * *
126000 ATTTTTTGAA-GTTCGAGGGT--AAAATGATA
1 ATTTTTAAAAGGTTCG-GGTTCAAAAATGA-G
* * *
126029 ATTGTTAAAAGGTTCGGGGTCAAAAATGGG
1 ATTTTTAAAAGGTTCGGGTTCAAAAATGAG
126059 ATTTTT
1 ATTTTT
126065 GGGAGTTTAG
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
28 6 0.08
29 20 0.27
30 43 0.57
31 6 0.08
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (30 bp):
ATTTTTAAAAGGTTCGGGTTCAAAAATGAG
Found at i:126003 original size:89 final size:89
Alignment explanation
Indices: 125705--126064 Score: 281
Period size: 89 Copynumber: 4.1 Consensus size: 89
125695 TAAAATTGTA
* * * *
125705 ATTTTTAGAAG-TTCTGGGGT-TAAAATGTGGTTTTTGGAAGTTCAAGGGTAAAATGGTGATTTT
1 ATTTTTAGAAGTTTC-GGGATCAAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTT
*
125768 TAGAAGTTTT-AGGGTTAAAAATGGG
65 TAAAAGTTTTGA-GGTTAAAAATGGG
* * * * * * *
125793 ATTTTTGGAAGTTTAGGGGT-AAAATTGTAATTTTTAGAAGTTTC-A-GGTCAAAAAT--AAGAT
1 ATTTTTAGAAGTTTCGGGATCAAAAATGTGATTTTTGGAAG-TTCAAGGGT--AAAATGGTA-AT
** * * * *
125853 TTTTGGAAG-TATGGGGGT-AAAATGGTA
62 TTTTAAAAGTTTTGAGGTTAAAAATGG-G
* * *
125880 ATTTTTAGAAGTTTCGGGATCAAAAAATGGGATTTTTGGGAGTTTAAGGGTAAAATGGTAATTTT
1 ATTTTTAGAAGTTTCGGGATC-AAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTT
*
125945 TAAAAGTTTTGAGGTTAAAAATGAG
65 TAAAAGTTTTGAGGTTAAAAATGGG
* * * * * * *
125970 ATTTTTAAAAGGTTCGGGTTCAAAAATGTGATTTTTTGAAGTTCGAGGGTAAAATGATAATTGTT
1 ATTTTTAGAAGTTTCGGGATCAAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTT
* * * *
126035 AAAAGGTTCGGGGTCAAAAATGGG
66 AAAAGTTTTGAGGTTAAAAATGGG
126059 ATTTTT
1 ATTTTT
126065 GGGAGTTTAG
Statistics
Matches: 211, Mismatches: 46, Indels: 29
0.74 0.16 0.10
Matches are distributed among these distances:
86 7 0.03
87 25 0.12
88 48 0.23
89 97 0.46
90 28 0.13
91 6 0.03
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.37
Consensus pattern (89 bp):
ATTTTTAGAAGTTTCGGGATCAAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTT
AAAAGTTTTGAGGTTAAAAATGGG
Found at i:126121 original size:58 final size:59
Alignment explanation
Indices: 125940--126160 Score: 200
Period size: 59 Copynumber: 3.7 Consensus size: 59
125930 TAAAATGGTA
* * * * *
125940 ATTTTTAAAAGTTTTGAGGTTAAAAAT-G-AGATTTTTAAAAGGTTCGG-GTTCAAAAATGTG
1 ATTTTTAGAAG-TTTGAGGGT-AAAATGGTA-ATTTTTAGAAGTTTCGGCG-TCAAAAATGAG
* * * * * * * *
126000 ATTTTTTGAAGTTCGAGGGTAAAATGATAATTGTTAAAAGGTTCGGGGTCAAAAATGGG
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTAGAAGTTTCGGCGTCAAAAATGAG
* * *
126059 ATTTTTGGGAGTTT-AGGGGTAAAATGGTAATTTTTAGAAGTTTTGGCGTC-AAAATGAG
1 ATTTTTAGAAGTTTGA-GGGTAAAATGGTAATTTTTAGAAGTTTCGGCGTCAAAAATGAG
*
126117 ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTGGACAGTTT
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTAGA-AGTTT
126161 AAGGACCTTC
Statistics
Matches: 135, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
58 46 0.34
59 78 0.58
60 11 0.08
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.38
Consensus pattern (59 bp):
ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTAGAAGTTTCGGCGTCAAAAATGAG
Found at i:126149 original size:29 final size:29
Alignment explanation
Indices: 125676--126160 Score: 243
Period size: 29 Copynumber: 16.5 Consensus size: 29
125666 TAAAAATATG
* * *
125676 ATTTTTGGAAGTTCGAGGGTAAAATTGTA
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
*
125705 ATTTTTAGAAGTTCTG-GGGTTAAAAT-GTG
1 ATTTTTAGAAGTT-TGAGGG-TAAAATGGTA
* * ** *
125734 GTTTTTGGAAGTTCAAGGGTAAAATGGTG
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* *
125763 ATTTTTAGAAGTTTTAGGGTTAAAAATGG-G
1 ATTTTTAGAAGTTTGAGGG-T-AAAATGGTA
* *
125793 ATTTTTGGAAGTTT-AGGGGTAAAATTGTA
1 ATTTTTAGAAGTTTGA-GGGTAAAATGGTA
* *
125822 ATTTTTAGAAGTTTCA-GGTCAAAAAT--AA
1 ATTTTTAGAAGTTTGAGGGT--AAAATGGTA
* * *
125850 GATTTTTGGAAGTATGGGGGTAAAATGGTA
1 -ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* *
125880 ATTTTTAGAAGTTTCG-GGATCAAAAAATGG-G
1 ATTTTTAGAAGTTT-GAGGGT---AAAATGGTA
* * *
125911 ATTTTTGGGAGTTTAAGGGTAAAATGGTA
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* *
125940 ATTTTTAAAAGTTTTGAGGTTAAAAAT-G-A
1 ATTTTTAGAAG-TTTGAGGGT-AAAATGGTA
* * * *
125969 GATTTTTAAAAGGTTCG-GGTTCAAAAAT-GTG
1 -ATTTTTAGAA-GTTTGAGGGT--AAAATGGTA
* * *
126000 ATTTTTTGAAGTTCGAGGGTAAAATGATA
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* * * *
126029 ATTGTTAAAAGGTTCG-GGGTCAAAAATGG-G
1 ATTTTTAGAA-GTTTGAGGGT--AAAATGGTA
* *
126059 ATTTTTGGGAGTTT-AGGGGTAAAATGGTA
1 ATTTTTAGAAGTTTGA-GGGTAAAATGGTA
*
126088 ATTTTTAGAAGTTTTG-GCGTCAAAAT-G-A
1 ATTTTTAGAAG-TTTGAGGGT-AAAATGGTA
126116 GATTTTTAGAAGTTTGAGGGTAAAATGGTA
1 -ATTTTTAGAAGTTTGAGGGTAAAATGGTA
*
126146 ATTTTTGGACAGTTT
1 ATTTTTAGA-AGTTT
126161 AAGGACCTTC
Statistics
Matches: 355, Mismatches: 58, Indels: 85
0.71 0.12 0.17
Matches are distributed among these distances:
28 50 0.14
29 160 0.45
30 104 0.29
31 34 0.10
32 7 0.02
ACGTcount: A:0.32, C:0.03, G:0.27, T:0.37
Consensus pattern (29 bp):
ATTTTTAGAAGTTTGAGGGTAAAATGGTA
Found at i:127916 original size:15 final size:15
Alignment explanation
Indices: 127895--127931 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
127885 TTATGGGCCG
127895 ATTTGGGTAATTTAA
1 ATTTGGGTAATTTAA
* *
127910 GTTTGGGTTATTTAA
1 ATTTGGGTAATTTAA
127925 ATTTGGG
1 ATTTGGG
127932 CCTAATTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (15 bp):
ATTTGGGTAATTTAA
Found at i:128010 original size:17 final size:18
Alignment explanation
Indices: 127975--128014 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
127965 TTTTGGACTT
127975 TTTAACTTTGAAATTAAA
1 TTTAACTTTGAAATTAAA
127993 TTTAA-TTT-AAATTTAAA
1 TTTAACTTTGAAA-TTAAA
128010 TTTAA
1 TTTAA
128015 GAAATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.14
17 13 0.62
18 5 0.24
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
TTTAACTTTGAAATTAAA
Found at i:135428 original size:29 final size:29
Alignment explanation
Indices: 135396--135493 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
135386 AAAAAATACG
* *
135396 ATTTTTGGATACCCAAGGGTAAAATTGTA
1 ATTTTTGGATACTCAAGGGTAAAATGGTA
* * *
135425 ATTTTTGGACACTCGAGGATGAAAATGGTA
1 ATTTTTGGATACTCAAGGGT-AAAATGGTA
* ** *
135455 ATTTTTTGATGTTCAAGGGTAAAACGGTA
1 ATTTTTGGATACTCAAGGGTAAAATGGTA
135484 A-TTTTGGATA
1 ATTTTTGGATA
135494 ATGCGGGGTA
Statistics
Matches: 54, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
28 7 0.13
29 25 0.46
30 22 0.41
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (29 bp):
ATTTTTGGATACTCAAGGGTAAAATGGTA
Found at i:135649 original size:27 final size:27
Alignment explanation
Indices: 135587--135665 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 27
135577 GACATCCGAA
135587 GGTAAAATGGTAATGTTTGGATAATTCGG
1 GGTAAAATGGTAAT-TTTGGA-AATTCGG
*
135616 GGTTAAAATAG-AATTTTGGAAATTCAGG
1 GG-TAAAATGGTAATTTTGGAAATTC-GG
*
135644 GGTAAAATGGTATTTTTGGAAA
1 GGTAAAATGGTAATTTTGGAAA
135666 AGTTTAGTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 12 0.27
28 20 0.45
29 5 0.11
30 7 0.16
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (27 bp):
GGTAAAATGGTAATTTTGGAAATTCGG
Found at i:135805 original size:59 final size:57
Alignment explanation
Indices: 135587--135886 Score: 238
Period size: 59 Copynumber: 5.1 Consensus size: 57
135577 GACATCCGAA
* ** *
135587 GGTAAAATGGTAATGTTTGGATAA-TTCGGGGTTAAAATAG-AA-TTTTGGAAATTCAGG
1 GGTAAAAT-GTAATTTTTGGA-AAGTTTAGGGTTAAAAT-GTAATTTTTGGAAATTTAGG
* * * *
135644 GGTAAAATGGT-ATTTTTGGAAAAGTTTA--GTCAAAAATGAAATTTTTGGAAATTCAAG
1 GGTAAAAT-GTAATTTTTGG-AAAGTTTAGGGT-TAAAATGTAATTTTTGGAAATTTAGG
* * * *
135701 AGTAAAATGGTAATTTTTGGAAAGTTTGGGGTTAAAATTTGATTTTTGGAAAGTTTAGG
1 GGTAAAAT-GTAATTTTTGGAAAGTTTAGGGTTAAAATGTAATTTTTGGAAA-TTTAGG
*
135760 GGTATAAATGCAATTTTT-GAGAAGTTTAGGGTCT-AAATGTAATTTTTGGAAAGTTTGAGG
1 GGTA-AAATGTAATTTTTGGA-AAGTTTAGGGT-TAAAATGTAATTTTTGGAAA-TTT-AGG
* * * * * *
135820 GTTAAGATATAATTTTTGGAAAGTTTAGGGTTAAAATATATTTTTTGGAAAATTTAAG
1 GGTAAAATGTAATTTTTGGAAAGTTTAGGGTTAAAATGTAATTTTTGG-AAATTTAGG
135878 GGTCAAAAT
1 GGT-AAAAT
135887 AAGATTTTTT
Statistics
Matches: 199, Mismatches: 27, Indels: 32
0.77 0.10 0.12
Matches are distributed among these distances:
55 3 0.02
56 16 0.08
57 45 0.23
58 31 0.16
59 88 0.44
60 16 0.08
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (57 bp):
GGTAAAATGTAATTTTTGGAAAGTTTAGGGTTAAAATGTAATTTTTGGAAATTTAGG
Found at i:135875 original size:29 final size:29
Alignment explanation
Indices: 135615--135895 Score: 206
Period size: 29 Copynumber: 9.7 Consensus size: 29
135605 GGATAATTCG
* *
135615 GGGTTAAAATAGAA-TTTTGGAAA-TTCA
1 GGGTTAAAATATAATTTTTGGAAAGTTTA
* *
135642 GGGGTAAAATGGT-ATTTTTGGAAAAGTTTA
1 GGGTTAAAAT-ATAATTTTTGG-AAAGTTTA
* *
135672 --GTCAAAA-ATGAAATTTTTGGAAA-TTCAA
1 GGGTTAAAATAT--AATTTTTGGAAAGTT-TA
* * *
135700 GAG-TAAAATGGTAATTTTTGGAAAGTTTG
1 GGGTTAAAAT-ATAATTTTTGGAAAGTTTA
* *
135729 GGGTTAAAATTTGATTTTTGGAAAGTTTA
1 GGGTTAAAATATAATTTTTGGAAAGTTTA
* **
135758 GGGGTATAAATGCAATTTTT-GAGAAGTTTA
1 GGGTTA-AAATATAATTTTTGGA-AAGTTTA
*
135788 GGGTCT-AAATGTAATTTTTGGAAAGTTTGA
1 GGGT-TAAAATATAATTTTTGGAAAGTTT-A
*
135818 GGGTTAAGATATAATTTTTGGAAAGTTTA
1 GGGTTAAAATATAATTTTTGGAAAGTTTA
* *
135847 GGGTTAAAATATATTTTTTGGAAAATTTAA
1 GGGTTAAAATATAATTTTTGGAAAGTTT-A
*
135877 GGGTCAAAATA-AGATTTTT
1 GGGTTAAAATATA-ATTTTT
135896 TAGACATTGC
Statistics
Matches: 203, Mismatches: 29, Indels: 41
0.74 0.11 0.15
Matches are distributed among these distances:
26 1 0.00
27 12 0.06
28 15 0.07
29 98 0.48
30 75 0.37
31 2 0.01
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.38
Consensus pattern (29 bp):
GGGTTAAAATATAATTTTTGGAAAGTTTA
Found at i:137832 original size:58 final size:56
Alignment explanation
Indices: 137711--138040 Score: 284
Period size: 58 Copynumber: 5.6 Consensus size: 56
137701 ACATTCGAGA
* * * * * *
137711 GTAAAATAGTAATTTTTGGATGTTTCGGGGTTAAAAATATGATTTTTGGAAGTTCGAGG
1 GTAAAATGGTAATTTTTAGAAGTTT-GGGGTT-AAAAT-GGGTTTTTGGAAGTTCAAGG
*
137770 GTAAAATTGTAATTTTTAGAAGTTCTGGGGTTAAAATGTGGTTTTTGGAAGTTCAAGG
1 GTAAAATGGTAATTTTTAGAAGTT-TGGGGTTAAAATG-GGTTTTTGGAAGTTCAAGG
* * * *
137828 GTAAAATGGTGATTTTTAGAAGTTTTAGGGTTAAAAATGGGATTTTTGGAAGTTTAGGG
1 GTAAAATGGTAATTTTTAGAAG-TTTGGGGTT-AAAATGGG-TTTTTGGAAGTTCAAGG
* ** * * * **
137887 GTAAAATTGTAATTTTTAGAAGTTTCAGGTCAAAAATAAGATTTTTGGAAGTAT-GGGG
1 GTAAAATGGTAATTTTTAGAAGTTTGGGGT-TAAAAT-GGGTTTTTGGAAGT-TCAAGG
* * * *
137945 GTAAAATGGTAATTTTTAGAAGTTTCGGGATCAAAAAATGGGATTTTTGGGAGTTTAAGG
1 GTAAAATGGTAATTTTTAGAAGTTT-GGGGT--TAAAATGGG-TTTTTGGAAGTTCAAGG
* *
138005 GTAAAATGGTAATTTTTAAAAGTTTTGAGGTTAAAA
1 GTAAAATGGTAATTTTTAGAAG-TTTGGGGTTAAAA
138041 ATGAGATTTT
Statistics
Matches: 225, Mismatches: 33, Indels: 27
0.79 0.12 0.09
Matches are distributed among these distances:
58 103 0.46
59 76 0.34
60 43 0.19
61 3 0.01
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (56 bp):
GTAAAATGGTAATTTTTAGAAGTTTGGGGTTAAAATGGGTTTTTGGAAGTTCAAGG
Found at i:137833 original size:117 final size:115
Alignment explanation
Indices: 137711--138051 Score: 362
Period size: 117 Copynumber: 2.9 Consensus size: 115
137701 ACATTCGAGA
* * * *
137711 GTAAAATAGTAATTTTTGGATGTTTCGGGGTTAAAAATATGATTTTTGGAAGTTCGAGGGTAAAA
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATATGATTTTTGGAAGTT-AAGGGTAAAA
* ** *
137776 TTGTAATTTTTAGAAGTTCTGGGGTTAAAATGTGGTTTTTGGAAGT-TCAAGG
65 TTGTAATTTTTAGAAGTT-TGAGGTTAAAATAAGATTTTTGGAAGTAT-AAGG
* ** ** *
137828 GTAAAATGGTGATTTTTAGAAGTTTTAGGGTTAAAAATGGGATTTTTGGAAGTTTAGGGGTAAAA
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATATGATTTTTGGAAG-TTAAGGGTAAAA
* * **
137893 TTGTAATTTTTAGAAGTTTCAGGTCAAAAATAAGATTTTTGGAAGTATGGGG
65 TTGTAATTTTTAGAAGTTTGAGGT-TAAAATAAGATTTTTGGAAGTATAAGG
* * *
137945 GTAAAATGGTAATTTTTAGAAGTTTCGGGATCAAAAA-ATGGGATTTTTGGGAGTTTAAGGGTAA
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATAT--GATTTTTGGAAG-TTAAGGGTAA
* * *
138009 AATGGTAATTTTTAAAAGTTTTGAGGTTAAAAATGAGATTTTT
63 AATTGTAATTTTTAGAAG-TTTGAGGTT-AAAATAAGATTTTT
138052 AAAAGGTTCG
Statistics
Matches: 185, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
116 4 0.02
117 121 0.65
118 40 0.22
119 20 0.11
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.38
Consensus pattern (115 bp):
GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATATGATTTTTGGAAGTTAAGGGTAAAAT
TGTAATTTTTAGAAGTTTGAGGTTAAAATAAGATTTTTGGAAGTATAAGG
Found at i:138050 original size:30 final size:30
Alignment explanation
Indices: 138016--138140 Score: 105
Period size: 30 Copynumber: 4.2 Consensus size: 30
138006 TAAAATGGTA
* *
138016 ATTTTTAAAAGTTTTGAGGTT-AAAAATGAG
1 ATTTTTAAAAGGTTCG-GGTTCAAAAATGAG
*
138046 ATTTTTAAAAGGTTCGGGTTCAAAAATGTG
1 ATTTTTAAAAGGTTCGGGTTCAAAAATGAG
** * *
138076 ATTTTTTGAA-GTTCGAGGGT--AAAATGATA
1 ATTTTTAAAAGGTTCG-GGTTCAAAAATGA-G
* * *
138105 ATTGTTAAAAGGTTCGGGGTCAAAAATGGG
1 ATTTTTAAAAGGTTCGGGTTCAAAAATGAG
138135 ATTTTT
1 ATTTTT
138141 GGGAGTTTAG
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
28 6 0.08
29 20 0.27
30 43 0.57
31 6 0.08
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (30 bp):
ATTTTTAAAAGGTTCGGGTTCAAAAATGAG
Found at i:138079 original size:89 final size:89
Alignment explanation
Indices: 137781--138140 Score: 281
Period size: 89 Copynumber: 4.1 Consensus size: 89
137771 TAAAATTGTA
* * * *
137781 ATTTTTAGAAG-TTCTGGGGT-TAAAATGTGGTTTTTGGAAGTTCAAGGGTAAAATGGTGATTTT
1 ATTTTTAGAAGTTTC-GGGATCAAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTT
*
137844 TAGAAGTTTT-AGGGTTAAAAATGGG
65 TAAAAGTTTTGA-GGTTAAAAATGGG
* * * * * * *
137869 ATTTTTGGAAGTTTAGGGGT-AAAATTGTAATTTTTAGAAGTTTC-A-GGTCAAAAAT--AAGAT
1 ATTTTTAGAAGTTTCGGGATCAAAAATGTGATTTTTGGAAG-TTCAAGGGT--AAAATGGTA-AT
** * * * *
137929 TTTTGGAAG-TATGGGGGT-AAAATGGTA
62 TTTTAAAAGTTTTGAGGTTAAAAATGG-G
* * *
137956 ATTTTTAGAAGTTTCGGGATCAAAAAATGGGATTTTTGGGAGTTTAAGGGTAAAATGGTAATTTT
1 ATTTTTAGAAGTTTCGGGATC-AAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTT
*
138021 TAAAAGTTTTGAGGTTAAAAATGAG
65 TAAAAGTTTTGAGGTTAAAAATGGG
* * * * * * *
138046 ATTTTTAAAAGGTTCGGGTTCAAAAATGTGATTTTTTGAAGTTCGAGGGTAAAATGATAATTGTT
1 ATTTTTAGAAGTTTCGGGATCAAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTT
* * * *
138111 AAAAGGTTCGGGGTCAAAAATGGG
66 AAAAGTTTTGAGGTTAAAAATGGG
138135 ATTTTT
1 ATTTTT
138141 GGGAGTTTAG
Statistics
Matches: 211, Mismatches: 46, Indels: 29
0.74 0.16 0.10
Matches are distributed among these distances:
86 7 0.03
87 25 0.12
88 48 0.23
89 97 0.46
90 28 0.13
91 6 0.03
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.37
Consensus pattern (89 bp):
ATTTTTAGAAGTTTCGGGATCAAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTT
AAAAGTTTTGAGGTTAAAAATGGG
Found at i:138197 original size:58 final size:59
Alignment explanation
Indices: 138016--138236 Score: 200
Period size: 59 Copynumber: 3.7 Consensus size: 59
138006 TAAAATGGTA
* * * * *
138016 ATTTTTAAAAGTTTTGAGGTTAAAAAT-G-AGATTTTTAAAAGGTTCGG-GTTCAAAAATGTG
1 ATTTTTAGAAG-TTTGAGGGT-AAAATGGTA-ATTTTTAGAAGTTTCGGCG-TCAAAAATGAG
* * * * * * * *
138076 ATTTTTTGAAGTTCGAGGGTAAAATGATAATTGTTAAAAGGTTCGGGGTCAAAAATGGG
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTAGAAGTTTCGGCGTCAAAAATGAG
* * *
138135 ATTTTTGGGAGTTT-AGGGGTAAAATGGTAATTTTTAGAAGTTTTGGCGTC-AAAATGAG
1 ATTTTTAGAAGTTTGA-GGGTAAAATGGTAATTTTTAGAAGTTTCGGCGTCAAAAATGAG
*
138193 ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTGGACAGTTT
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTAGA-AGTTT
138237 AAGGACCTTC
Statistics
Matches: 135, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
58 46 0.34
59 78 0.58
60 11 0.08
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.38
Consensus pattern (59 bp):
ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTAGAAGTTTCGGCGTCAAAAATGAG
Found at i:138225 original size:29 final size:29
Alignment explanation
Indices: 137752--138236 Score: 243
Period size: 29 Copynumber: 16.5 Consensus size: 29
137742 TAAAAATATG
* * *
137752 ATTTTTGGAAGTTCGAGGGTAAAATTGTA
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
*
137781 ATTTTTAGAAGTTCTG-GGGTTAAAAT-GTG
1 ATTTTTAGAAGTT-TGAGGG-TAAAATGGTA
* * ** *
137810 GTTTTTGGAAGTTCAAGGGTAAAATGGTG
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* *
137839 ATTTTTAGAAGTTTTAGGGTTAAAAATGG-G
1 ATTTTTAGAAGTTTGAGGG-T-AAAATGGTA
* *
137869 ATTTTTGGAAGTTT-AGGGGTAAAATTGTA
1 ATTTTTAGAAGTTTGA-GGGTAAAATGGTA
* *
137898 ATTTTTAGAAGTTTCA-GGTCAAAAAT--AA
1 ATTTTTAGAAGTTTGAGGGT--AAAATGGTA
* * *
137926 GATTTTTGGAAGTATGGGGGTAAAATGGTA
1 -ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* *
137956 ATTTTTAGAAGTTTCG-GGATCAAAAAATGG-G
1 ATTTTTAGAAGTTT-GAGGGT---AAAATGGTA
* * *
137987 ATTTTTGGGAGTTTAAGGGTAAAATGGTA
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* *
138016 ATTTTTAAAAGTTTTGAGGTTAAAAAT-G-A
1 ATTTTTAGAAG-TTTGAGGGT-AAAATGGTA
* * * *
138045 GATTTTTAAAAGGTTCG-GGTTCAAAAAT-GTG
1 -ATTTTTAGAA-GTTTGAGGGT--AAAATGGTA
* * *
138076 ATTTTTTGAAGTTCGAGGGTAAAATGATA
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* * * *
138105 ATTGTTAAAAGGTTCG-GGGTCAAAAATGG-G
1 ATTTTTAGAA-GTTTGAGGGT--AAAATGGTA
* *
138135 ATTTTTGGGAGTTT-AGGGGTAAAATGGTA
1 ATTTTTAGAAGTTTGA-GGGTAAAATGGTA
*
138164 ATTTTTAGAAGTTTTG-GCGTCAAAAT-G-A
1 ATTTTTAGAAG-TTTGAGGGT-AAAATGGTA
138192 GATTTTTAGAAGTTTGAGGGTAAAATGGTA
1 -ATTTTTAGAAGTTTGAGGGTAAAATGGTA
*
138222 ATTTTTGGACAGTTT
1 ATTTTTAGA-AGTTT
138237 AAGGACCTTC
Statistics
Matches: 355, Mismatches: 58, Indels: 85
0.71 0.12 0.17
Matches are distributed among these distances:
28 50 0.14
29 160 0.45
30 104 0.29
31 34 0.10
32 7 0.02
ACGTcount: A:0.32, C:0.03, G:0.27, T:0.37
Consensus pattern (29 bp):
ATTTTTAGAAGTTTGAGGGTAAAATGGTA
Found at i:139992 original size:15 final size:15
Alignment explanation
Indices: 139971--140007 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
139961 TTATGGGCCG
139971 ATTTGGGTAATTTAA
1 ATTTGGGTAATTTAA
* *
139986 GTTTGGGTTATTTAA
1 ATTTGGGTAATTTAA
140001 ATTTGGG
1 ATTTGGG
140008 CCTAATTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (15 bp):
ATTTGGGTAATTTAA
Found at i:140086 original size:17 final size:18
Alignment explanation
Indices: 140051--140090 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
140041 TTTTGGACTT
140051 TTTAACTTTGAAATTAAA
1 TTTAACTTTGAAATTAAA
140069 TTTAA-TTT-AAATTTAAA
1 TTTAACTTTGAAA-TTAAA
140086 TTTAA
1 TTTAA
140091 GAAATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.14
17 13 0.62
18 5 0.24
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
TTTAACTTTGAAATTAAA
Found at i:145143 original size:29 final size:29
Alignment explanation
Indices: 145111--145208 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
145101 AAAAAATACG
* *
145111 ATTTTTGGATACCCAAGGGTAAAATTGTA
1 ATTTTTGGATACTCAAGGGTAAAATGGTA
* * *
145140 ATTTTTGGACACTCGAGGATGAAAATGGTA
1 ATTTTTGGATACTCAAGGGT-AAAATGGTA
* ** *
145170 ATTTTTTGATGTTCAAGGGTAAAACGGTA
1 ATTTTTGGATACTCAAGGGTAAAATGGTA
145199 A-TTTTGGATA
1 ATTTTTGGATA
145209 ATGCGGGGTA
Statistics
Matches: 54, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
28 7 0.13
29 25 0.46
30 22 0.41
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (29 bp):
ATTTTTGGATACTCAAGGGTAAAATGGTA
Found at i:145364 original size:27 final size:27
Alignment explanation
Indices: 145302--145380 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 27
145292 GACATCCGAA
145302 GGTAAAATGGTAATGTTTGGATAATTCGG
1 GGTAAAATGGTAAT-TTTGGA-AATTCGG
*
145331 GGTTAAAATAG-AATTTTGGAAATTCAGG
1 GG-TAAAATGGTAATTTTGGAAATTC-GG
*
145359 GGTAAAATGGTATTTTTGGAAA
1 GGTAAAATGGTAATTTTGGAAA
145381 AGTTTAGTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 12 0.27
28 20 0.45
29 5 0.11
30 7 0.16
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (27 bp):
GGTAAAATGGTAATTTTGGAAATTCGG
Found at i:145520 original size:59 final size:57
Alignment explanation
Indices: 145302--145601 Score: 238
Period size: 59 Copynumber: 5.1 Consensus size: 57
145292 GACATCCGAA
* ** *
145302 GGTAAAATGGTAATGTTTGGATAA-TTCGGGGTTAAAATAG-AA-TTTTGGAAATTCAGG
1 GGTAAAAT-GTAATTTTTGGA-AAGTTTAGGGTTAAAAT-GTAATTTTTGGAAATTTAGG
* * * *
145359 GGTAAAATGGT-ATTTTTGGAAAAGTTTA--GTCAAAAATGAAATTTTTGGAAATTCAAG
1 GGTAAAAT-GTAATTTTTGG-AAAGTTTAGGGT-TAAAATGTAATTTTTGGAAATTTAGG
* * * *
145416 AGTAAAATGGTAATTTTTGGAAAGTTTGGGGTTAAAATTTGATTTTTGGAAAGTTTAGG
1 GGTAAAAT-GTAATTTTTGGAAAGTTTAGGGTTAAAATGTAATTTTTGGAAA-TTTAGG
*
145475 GGTATAAATGCAATTTTT-GAGAAGTTTAGGGTCT-AAATGTAATTTTTGGAAAGTTTGAGG
1 GGTA-AAATGTAATTTTTGGA-AAGTTTAGGGT-TAAAATGTAATTTTTGGAAA-TTT-AGG
* * * * * *
145535 GTTAAGATATAATTTTTGGAAAGTTTAGGGTTAAAATATATTTTTTGGAAAATTTAAG
1 GGTAAAATGTAATTTTTGGAAAGTTTAGGGTTAAAATGTAATTTTTGG-AAATTTAGG
145593 GGTCAAAAT
1 GGT-AAAAT
145602 AAGATTTTTT
Statistics
Matches: 199, Mismatches: 27, Indels: 32
0.77 0.10 0.12
Matches are distributed among these distances:
55 3 0.02
56 16 0.08
57 45 0.23
58 31 0.16
59 88 0.44
60 16 0.08
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (57 bp):
GGTAAAATGTAATTTTTGGAAAGTTTAGGGTTAAAATGTAATTTTTGGAAATTTAGG
Found at i:145590 original size:29 final size:29
Alignment explanation
Indices: 145330--145610 Score: 206
Period size: 29 Copynumber: 9.7 Consensus size: 29
145320 GGATAATTCG
* *
145330 GGGTTAAAATAGAA-TTTTGGAAA-TTCA
1 GGGTTAAAATATAATTTTTGGAAAGTTTA
* *
145357 GGGGTAAAATGGT-ATTTTTGGAAAAGTTTA
1 GGGTTAAAAT-ATAATTTTTGG-AAAGTTTA
* *
145387 --GTCAAAA-ATGAAATTTTTGGAAA-TTCAA
1 GGGTTAAAATAT--AATTTTTGGAAAGTT-TA
* * *
145415 GAG-TAAAATGGTAATTTTTGGAAAGTTTG
1 GGGTTAAAAT-ATAATTTTTGGAAAGTTTA
* *
145444 GGGTTAAAATTTGATTTTTGGAAAGTTTA
1 GGGTTAAAATATAATTTTTGGAAAGTTTA
* **
145473 GGGGTATAAATGCAATTTTT-GAGAAGTTTA
1 GGGTTA-AAATATAATTTTTGGA-AAGTTTA
*
145503 GGGTCT-AAATGTAATTTTTGGAAAGTTTGA
1 GGGT-TAAAATATAATTTTTGGAAAGTTT-A
*
145533 GGGTTAAGATATAATTTTTGGAAAGTTTA
1 GGGTTAAAATATAATTTTTGGAAAGTTTA
* *
145562 GGGTTAAAATATATTTTTTGGAAAATTTAA
1 GGGTTAAAATATAATTTTTGGAAAGTTT-A
*
145592 GGGTCAAAATA-AGATTTTT
1 GGGTTAAAATATA-ATTTTT
145611 TAGACATTGC
Statistics
Matches: 203, Mismatches: 29, Indels: 41
0.74 0.11 0.15
Matches are distributed among these distances:
26 1 0.00
27 12 0.06
28 15 0.07
29 98 0.48
30 75 0.37
31 2 0.01
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.38
Consensus pattern (29 bp):
GGGTTAAAATATAATTTTTGGAAAGTTTA
Found at i:147547 original size:58 final size:56
Alignment explanation
Indices: 147426--147755 Score: 284
Period size: 58 Copynumber: 5.6 Consensus size: 56
147416 ACATTCGAGA
* * * * * *
147426 GTAAAATAGTAATTTTTGGATGTTTCGGGGTTAAAAATATGATTTTTGGAAGTTCGAGG
1 GTAAAATGGTAATTTTTAGAAGTTT-GGGGTT-AAAAT-GGGTTTTTGGAAGTTCAAGG
*
147485 GTAAAATTGTAATTTTTAGAAGTTCTGGGGTTAAAATGTGGTTTTTGGAAGTTCAAGG
1 GTAAAATGGTAATTTTTAGAAGTT-TGGGGTTAAAATG-GGTTTTTGGAAGTTCAAGG
* * * *
147543 GTAAAATGGTGATTTTTAGAAGTTTTAGGGTTAAAAATGGGATTTTTGGAAGTTTAGGG
1 GTAAAATGGTAATTTTTAGAAG-TTTGGGGTT-AAAATGGG-TTTTTGGAAGTTCAAGG
* ** * * * **
147602 GTAAAATTGTAATTTTTAGAAGTTTCAGGTCAAAAATAAGATTTTTGGAAGTAT-GGGG
1 GTAAAATGGTAATTTTTAGAAGTTTGGGGT-TAAAAT-GGGTTTTTGGAAGT-TCAAGG
* * * *
147660 GTAAAATGGTAATTTTTAGAAGTTTCGGGATCAAAAAATGGGATTTTTGGGAGTTTAAGG
1 GTAAAATGGTAATTTTTAGAAGTTT-GGGGT--TAAAATGGG-TTTTTGGAAGTTCAAGG
* *
147720 GTAAAATGGTAATTTTTAAAAGTTTTGAGGTTAAAA
1 GTAAAATGGTAATTTTTAGAAG-TTTGGGGTTAAAA
147756 ATGAGATTTT
Statistics
Matches: 225, Mismatches: 33, Indels: 27
0.79 0.12 0.09
Matches are distributed among these distances:
58 103 0.46
59 76 0.34
60 43 0.19
61 3 0.01
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (56 bp):
GTAAAATGGTAATTTTTAGAAGTTTGGGGTTAAAATGGGTTTTTGGAAGTTCAAGG
Found at i:147548 original size:117 final size:115
Alignment explanation
Indices: 147426--147766 Score: 362
Period size: 117 Copynumber: 2.9 Consensus size: 115
147416 ACATTCGAGA
* * * *
147426 GTAAAATAGTAATTTTTGGATGTTTCGGGGTTAAAAATATGATTTTTGGAAGTTCGAGGGTAAAA
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATATGATTTTTGGAAGTT-AAGGGTAAAA
* ** *
147491 TTGTAATTTTTAGAAGTTCTGGGGTTAAAATGTGGTTTTTGGAAGT-TCAAGG
65 TTGTAATTTTTAGAAGTT-TGAGGTTAAAATAAGATTTTTGGAAGTAT-AAGG
* ** ** *
147543 GTAAAATGGTGATTTTTAGAAGTTTTAGGGTTAAAAATGGGATTTTTGGAAGTTTAGGGGTAAAA
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATATGATTTTTGGAAG-TTAAGGGTAAAA
* * **
147608 TTGTAATTTTTAGAAGTTTCAGGTCAAAAATAAGATTTTTGGAAGTATGGGG
65 TTGTAATTTTTAGAAGTTTGAGGT-TAAAATAAGATTTTTGGAAGTATAAGG
* * *
147660 GTAAAATGGTAATTTTTAGAAGTTTCGGGATCAAAAA-ATGGGATTTTTGGGAGTTTAAGGGTAA
1 GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATAT--GATTTTTGGAAG-TTAAGGGTAA
* * *
147724 AATGGTAATTTTTAAAAGTTTTGAGGTTAAAAATGAGATTTTT
63 AATTGTAATTTTTAGAAG-TTTGAGGTT-AAAATAAGATTTTT
147767 AAAAGGTTCG
Statistics
Matches: 185, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
116 4 0.02
117 121 0.65
118 40 0.22
119 20 0.11
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.38
Consensus pattern (115 bp):
GTAAAATGGTAATTTTTAGAAGTTTCGGGGTTAAAAATATGATTTTTGGAAGTTAAGGGTAAAAT
TGTAATTTTTAGAAGTTTGAGGTTAAAATAAGATTTTTGGAAGTATAAGG
Found at i:147765 original size:30 final size:30
Alignment explanation
Indices: 147731--147855 Score: 105
Period size: 30 Copynumber: 4.2 Consensus size: 30
147721 TAAAATGGTA
* *
147731 ATTTTTAAAAGTTTTGAGGTT-AAAAATGAG
1 ATTTTTAAAAGGTTCG-GGTTCAAAAATGAG
*
147761 ATTTTTAAAAGGTTCGGGTTCAAAAATGTG
1 ATTTTTAAAAGGTTCGGGTTCAAAAATGAG
** * *
147791 ATTTTTTGAA-GTTCGAGGGT--AAAATGATA
1 ATTTTTAAAAGGTTCG-GGTTCAAAAATGA-G
* * *
147820 ATTGTTAAAAGGTTCGGGGTCAAAAATGGG
1 ATTTTTAAAAGGTTCGGGTTCAAAAATGAG
147850 ATTTTT
1 ATTTTT
147856 GGGAGTTTAG
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
28 6 0.08
29 20 0.27
30 43 0.57
31 6 0.08
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (30 bp):
ATTTTTAAAAGGTTCGGGTTCAAAAATGAG
Found at i:147794 original size:89 final size:89
Alignment explanation
Indices: 147496--147855 Score: 281
Period size: 89 Copynumber: 4.1 Consensus size: 89
147486 TAAAATTGTA
* * * *
147496 ATTTTTAGAAG-TTCTGGGGT-TAAAATGTGGTTTTTGGAAGTTCAAGGGTAAAATGGTGATTTT
1 ATTTTTAGAAGTTTC-GGGATCAAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTT
*
147559 TAGAAGTTTT-AGGGTTAAAAATGGG
65 TAAAAGTTTTGA-GGTTAAAAATGGG
* * * * * * *
147584 ATTTTTGGAAGTTTAGGGGT-AAAATTGTAATTTTTAGAAGTTTC-A-GGTCAAAAAT--AAGAT
1 ATTTTTAGAAGTTTCGGGATCAAAAATGTGATTTTTGGAAG-TTCAAGGGT--AAAATGGTA-AT
** * * * *
147644 TTTTGGAAG-TATGGGGGT-AAAATGGTA
62 TTTTAAAAGTTTTGAGGTTAAAAATGG-G
* * *
147671 ATTTTTAGAAGTTTCGGGATCAAAAAATGGGATTTTTGGGAGTTTAAGGGTAAAATGGTAATTTT
1 ATTTTTAGAAGTTTCGGGATC-AAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTT
*
147736 TAAAAGTTTTGAGGTTAAAAATGAG
65 TAAAAGTTTTGAGGTTAAAAATGGG
* * * * * * *
147761 ATTTTTAAAAGGTTCGGGTTCAAAAATGTGATTTTTTGAAGTTCGAGGGTAAAATGATAATTGTT
1 ATTTTTAGAAGTTTCGGGATCAAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTT
* * * *
147826 AAAAGGTTCGGGGTCAAAAATGGG
66 AAAAGTTTTGAGGTTAAAAATGGG
147850 ATTTTT
1 ATTTTT
147856 GGGAGTTTAG
Statistics
Matches: 211, Mismatches: 46, Indels: 29
0.74 0.16 0.10
Matches are distributed among these distances:
86 7 0.03
87 25 0.12
88 48 0.23
89 97 0.46
90 28 0.13
91 6 0.03
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.37
Consensus pattern (89 bp):
ATTTTTAGAAGTTTCGGGATCAAAAATGTGATTTTTGGAAGTTCAAGGGTAAAATGGTAATTTTT
AAAAGTTTTGAGGTTAAAAATGGG
Found at i:147912 original size:58 final size:59
Alignment explanation
Indices: 147731--147951 Score: 200
Period size: 59 Copynumber: 3.7 Consensus size: 59
147721 TAAAATGGTA
* * * * *
147731 ATTTTTAAAAGTTTTGAGGTTAAAAAT-G-AGATTTTTAAAAGGTTCGG-GTTCAAAAATGTG
1 ATTTTTAGAAG-TTTGAGGGT-AAAATGGTA-ATTTTTAGAAGTTTCGGCG-TCAAAAATGAG
* * * * * * * *
147791 ATTTTTTGAAGTTCGAGGGTAAAATGATAATTGTTAAAAGGTTCGGGGTCAAAAATGGG
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTAGAAGTTTCGGCGTCAAAAATGAG
* * *
147850 ATTTTTGGGAGTTT-AGGGGTAAAATGGTAATTTTTAGAAGTTTTGGCGTC-AAAATGAG
1 ATTTTTAGAAGTTTGA-GGGTAAAATGGTAATTTTTAGAAGTTTCGGCGTCAAAAATGAG
*
147908 ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTGGACAGTTT
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTAGA-AGTTT
147952 AAGGACCTTC
Statistics
Matches: 135, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
58 46 0.34
59 78 0.58
60 11 0.08
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.38
Consensus pattern (59 bp):
ATTTTTAGAAGTTTGAGGGTAAAATGGTAATTTTTAGAAGTTTCGGCGTCAAAAATGAG
Found at i:147940 original size:29 final size:29
Alignment explanation
Indices: 147467--147951 Score: 243
Period size: 29 Copynumber: 16.5 Consensus size: 29
147457 TAAAAATATG
* * *
147467 ATTTTTGGAAGTTCGAGGGTAAAATTGTA
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
*
147496 ATTTTTAGAAGTTCTG-GGGTTAAAAT-GTG
1 ATTTTTAGAAGTT-TGAGGG-TAAAATGGTA
* * ** *
147525 GTTTTTGGAAGTTCAAGGGTAAAATGGTG
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* *
147554 ATTTTTAGAAGTTTTAGGGTTAAAAATGG-G
1 ATTTTTAGAAGTTTGAGGG-T-AAAATGGTA
* *
147584 ATTTTTGGAAGTTT-AGGGGTAAAATTGTA
1 ATTTTTAGAAGTTTGA-GGGTAAAATGGTA
* *
147613 ATTTTTAGAAGTTTCA-GGTCAAAAAT--AA
1 ATTTTTAGAAGTTTGAGGGT--AAAATGGTA
* * *
147641 GATTTTTGGAAGTATGGGGGTAAAATGGTA
1 -ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* *
147671 ATTTTTAGAAGTTTCG-GGATCAAAAAATGG-G
1 ATTTTTAGAAGTTT-GAGGGT---AAAATGGTA
* * *
147702 ATTTTTGGGAGTTTAAGGGTAAAATGGTA
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* *
147731 ATTTTTAAAAGTTTTGAGGTTAAAAAT-G-A
1 ATTTTTAGAAG-TTTGAGGGT-AAAATGGTA
* * * *
147760 GATTTTTAAAAGGTTCG-GGTTCAAAAAT-GTG
1 -ATTTTTAGAA-GTTTGAGGGT--AAAATGGTA
* * *
147791 ATTTTTTGAAGTTCGAGGGTAAAATGATA
1 ATTTTTAGAAGTTTGAGGGTAAAATGGTA
* * * *
147820 ATTGTTAAAAGGTTCG-GGGTCAAAAATGG-G
1 ATTTTTAGAA-GTTTGAGGGT--AAAATGGTA
* *
147850 ATTTTTGGGAGTTT-AGGGGTAAAATGGTA
1 ATTTTTAGAAGTTTGA-GGGTAAAATGGTA
*
147879 ATTTTTAGAAGTTTTG-GCGTCAAAAT-G-A
1 ATTTTTAGAAG-TTTGAGGGT-AAAATGGTA
147907 GATTTTTAGAAGTTTGAGGGTAAAATGGTA
1 -ATTTTTAGAAGTTTGAGGGTAAAATGGTA
*
147937 ATTTTTGGACAGTTT
1 ATTTTTAGA-AGTTT
147952 AAGGACCTTC
Statistics
Matches: 355, Mismatches: 58, Indels: 85
0.71 0.12 0.17
Matches are distributed among these distances:
28 50 0.14
29 160 0.45
30 104 0.29
31 34 0.10
32 7 0.02
ACGTcount: A:0.32, C:0.03, G:0.27, T:0.37
Consensus pattern (29 bp):
ATTTTTAGAAGTTTGAGGGTAAAATGGTA
Found at i:149707 original size:15 final size:15
Alignment explanation
Indices: 149686--149722 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
149676 TTATGGGCCG
149686 ATTTGGGTAATTTAA
1 ATTTGGGTAATTTAA
* *
149701 GTTTGGGTTATTTAA
1 ATTTGGGTAATTTAA
149716 ATTTGGG
1 ATTTGGG
149723 CCTAATTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (15 bp):
ATTTGGGTAATTTAA
Found at i:149801 original size:17 final size:18
Alignment explanation
Indices: 149766--149805 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
149756 TTTTGGACTT
149766 TTTAACTTTGAAATTAAA
1 TTTAACTTTGAAATTAAA
149784 TTTAA-TTT-AAATTTAAA
1 TTTAACTTTGAAA-TTAAA
149801 TTTAA
1 TTTAA
149806 GAAATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.14
17 13 0.62
18 5 0.24
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
TTTAACTTTGAAATTAAA
Found at i:150414 original size:201 final size:201
Alignment explanation
Indices: 150058--151105 Score: 1526
Period size: 204 Copynumber: 5.2 Consensus size: 201
150048 TTACCGATTT
* * * * ** * *
150058 GGTCTTTTTCTCAGTATCTCATTAGGAAGATGACTGTATCGTTTGTTTCAATTCGCTTCTCTATA
1 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTCCTCTGTA
* *
150123 TCTCATCAGGAAGACGTATTTGGTTCACTTCTCAGTATCTCATCAGGATGCTAACCTTTTATTGC
66 TCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGC
*
150188 TTCGACCTGCTTCTCAGTGTCTCATCAAGG-AGCTTGGGTTCGAAGATTTTGCTCGTTTTGAGCC
131 TTCGACCTGCTTCTCAGTGTCTCATC-AGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTTGAGCC
150252 TCGTTTG
195 TCGTTTG
* * *
150259 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAACTCGCTTCTTTGTA
1 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTCCTCTGTA
*
150324 TCTCATCAGGAAGGCGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGC
66 TCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGC
* *** * *
150389 TTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGA-TTTGCTCACATCGAGCRT
131 TTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTTGAGCCT
*
150453 GGSTTTG
196 CG-TTTG
* * * *
150460 ATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCRTCGYTTGTTTCAATCCGCTCCTC
1 ----GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTCCTC
*
150525 TGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAAGAAGCTAACCTTTTA
62 TGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTA
* * ** *
150590 TTGCTTCGACCTGCTTCTCAGTGTCTCGTCAGGAAACTAAGGTTCGAAGATTTTACTCGTTTTGA
127 TTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTTGA
150655 GCCTCGTTTG
192 GCCTCGTTTG
* *
150665 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACATCGTTGTTTGTTTCAATTCGCTCCTCT
1 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGA-C-C-GCGTCGTTTGTTTCAATTCGCTCCTCT
* *
150730 ATATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTAT
63 GTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTAT
* * **
150795 TGCTTCGACCTGCTTCTTAGTGTCTCGTCAGGAAATTGGGGTTCGAAGATTTTGCTCGTTTTGAG
128 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTTGAG
**
150860 CCTAATTTG
193 CCTCGTTTG
* * *
150869 GGTCTTCTTCTCAATGTCTCATCAGGAAGATGATCACATCG-CTGTTTGTTTCAATTCGCTCCTT
1 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGA-C-C-GCGTC-GTTTGTTTCAATTCGCTCCTC
150933 TGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTA
62 TGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTA
*
150998 TTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTTGAAGATTTTGCTCGTTTTGA
127 TTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTTGA
151063 GCCTCGTTTG
192 GCCTCGTTTG
* *
151073 GGTCTTCTTCTCAATGTCTTATCAGGAAGATGA
1 GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGA
151106 TCACGTCATT
Statistics
Matches: 766, Mismatches: 70, Indels: 19
0.90 0.08 0.02
Matches are distributed among these distances:
200 17 0.02
201 194 0.25
202 1 0.00
203 1 0.00
204 374 0.49
205 166 0.22
206 13 0.02
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (201 bp):
GGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTCCTCTGTA
TCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGC
TTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCGTTTTGAGCCT
CGTTTG
Found at i:151032 original size:408 final size:405
Alignment explanation
Indices: 150057--151110 Score: 1560
Period size: 406 Copynumber: 2.6 Consensus size: 405
150047 TTTACCGATT
* * * *** * *
150057 TGGTCTTTTTCTCAGTATCTCATTAGGAAGATGACTGTATCGTTTGTTTCAATTCGCTTCTCTAT
1 TGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCACATCGTTTGTTTCAATTCGCTCCTCTGT
* *
150122 ATCTCATCAGGAAGACGTATTTGGTTCACTTCTCAGTATCTCATCAGGATGCTAACCTTTTATTG
66 ATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTG
*
150187 CTTCGACCTGCTTCTCAGTGTCTCATCAAGG-AGCTTGGGTTCGAAGATTTTGCTCGTTTTGAGC
131 CTTCGACCTGCTTCTCAGTGTCTCATC-AGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAGC
150251 CTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGA-C-CGCGTCGTTTGTTTCAACTCG
195 CTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACGCGTCGTTTGTTTCAACTCG
* * * **
150314 CTTCTTTGTATCTCATCAGGAAGGCGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAAC
260 CTCCTCTATATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAAC
*
150379 CTTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCAC
325 CTTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAACTGGGGTTCGAAGATTTGCTCAC
* **
150444 ATCGAGCRTGGSTTTG
390 ATCGAGCCTGAATTTG
* * * * *
150460 ATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCRTCGYTTGTTTCAATCCGCTCCTC
1 ---TGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCACATCGTTTGTTTCAATTCGCTCCTC
*
150525 TGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAAGAAGCTAACCTTTTA
63 TGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTA
* * * *
150590 TTGCTTCGACCTGCTTCTCAGTGTCTCGTCAGGAAACTAAGGTTCGAAGATTTTACTCGTTTTGA
128 TTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGA
* * *
150655 GCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACATCGTTGTTTGTTTCAAT
193 GCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCAC-GCGTCGTTTGTTTCAAC
150720 TCGCTCCTCTATATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCT
257 TCGCTCCTCTATATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCT
* * * *
150785 AACCTTTTATTGCTTCGACCTGCTTCTTAGTGTCTCGTCAGGAAATTGGGGTTCGAAGATTTTGC
322 AACCTTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAACTGGGGTTCGAAGA-TTTGC
*** *
150850 TCGTTTTGAGCCT-AATTTG
386 TCACATCGAGCCTGAATTTG
* * *
150869 -GGTCTTCTTCTCAATGTCTCATCAGGAAGATGATCACATCGCTGTTTGTTTCAATTCGCTCCTT
1 TGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCACAT--C-GTTTGTTTCAATTCGCTCCTC
150933 TGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTA
63 TGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTA
* *
150998 TTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTTGAAGATTTTGCTCGTTTTGA
128 TTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGA
* *
151063 GCCTCGTTTGGGTCTTCTTCTCAATGTCTTATCAGGAAGATGATCACG
193 GCCTCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACG
151111 TCATTTGTGG
Statistics
Matches: 585, Mismatches: 55, Indels: 15
0.89 0.08 0.02
Matches are distributed among these distances:
405 37 0.06
406 214 0.37
407 2 0.00
408 187 0.32
409 132 0.23
410 13 0.02
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (405 bp):
TGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCACATCGTTTGTTTCAATTCGCTCCTCTGT
ATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTG
CTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCGAAGATTTTGCTCGTTTTGAGCC
TCGTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGATCACGCGTCGTTTGTTTCAACTCGC
TCCTCTATATCTCATCAGGAAAACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACC
TTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAACTGGGGTTCGAAGATTTGCTCACA
TCGAGCCTGAATTTG
Done.