Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011689.1 Kokia drynarioides strain JFW-HI SEQ_126682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7372
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31


Found at i:3296 original size:4 final size:4

Alignment explanation


    Indices: 3287--3339  Score: 63
    Period size: 4  Copynumber: 13.2  Consensus size: 4

       3277 AACACATTAC

                                                 *      *               
       3287 CTTT CTTT CTTT C-TT CTTT CTTT CCTTT CCTT CTTC CTTT CTTT CTTT
          1 CTTT CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CTTT CTTT CTTT CTTT

            *     
       3335 TTTT C
          1 CTTT C

       3340 CCGTTTATTT


Statistics
Matches: 41,  Mismatches: 6, Indels: 4
        0.80            0.12        0.08

Matches are distributed among these distances:
   3    3  0.07
   4   34  0.83
   5    4  0.10

ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70


Consensus pattern (4 bp):   
CTTT

Done.